BAC Information

Click to search

BAC

Clone NameB6Ng01-334B03
Chromosome13 (Build37)
Map Location 64,149,213 - 64,298,928
singlet/doubletdoublet
Overlap geneHsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b
Upstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575
Downstream gene1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334B03.bB6Ng01-334B03.g
ACCGA119665GA119666
length9711,015
definitionB6Ng01-334B03.b B6Ng01-334B03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,149,213 - 64,150,184)(64,297,911 - 64,298,928)
sequence
gaattcaaagctgtatgttgcagctggcacattctatgggtgtgatttag
gtaagaaatccaggcagtggacccagaaggaaaggaaaggacttggccct
acatcaaaagattggcagaagaatgtaattttgtatgttttaagttaaaa
taaaatgtttaatgtagcaaccccttgacctagtaaatccactcccaagg
ataaacctaaaagaaatagaaacatatgtccaccgaattcttaggcaagt
gtgttcatagcagcttgggtactgttgccccatgttggggatccaaacac
ccatcaagaggagaaaaagaaaatgaattaagatatagtcttgtatgaaa
taggtgcaacaagaaggaagaatgaacacaaacatgtggataactctcat
aaacatggtaccaagtaagaaaaacctgagaaaaatgagcccagaccgtc
taatttcaactactctagggaagacaactccagaacattctcagacaata
ttagtgtctggtgtctttataggcttgggggtggcacacctgtttagaca
ttcccatctaggaatccttattctgggtgaagaatgggaaacaatgtttt
aatgttcacctgaagatttgcctaaagcctctctgatacaagctaacatc
tgaattgaacctaatacaacacctaattctctccttgcagtgatgagaca
aggcgtctgtatgtacagcgcatgtcagctgtggacaaaagcaattgcta
gctagctgaagccctgtaacttcctctgggtctaggattatgcaacactg
aaataagttctgcaaatatcagagaagaaaatgggatctgtcacaatgac
agaagacaagcagcctaaaaggacaaacttctcacaagacttgctataca
agcacaagggtctgaatgcagatcctagcacccatatatatatatatata
tatatatatatatatatatat
gaattcatttccgtcttgcctgtcattgcatcatagctctctgggcctca
gctcctggtttctgttccgttgcttccgggatttcatatttcatcggcca
ttatctccaggaaccccaggatgttctccctctattcttcttaagctaac
atcctgtggaatggcagatacatttccacttgactcgacccagagattgt
ctttgcactcaagactctctgctccagtgtgtaaaaactatgcacccagt
tcgggtcagtcttcgctttccaagtgagggtcgtctccggatcagaagta
atttcataggtgggtttgtcttttctcatttgtactttcttcttttcctt
tttctctgaaagttgctaatgagtttgaggtataacagcacattgtggga
gaaagaaagagaggaagggtgagttaggttgattttgggtgagcccagag
gggcccttggctgtccctgcccagatctctttacagacaggccaagtgct
ccaagaggatgggcctggctcgaaaccacccagtaattcctctttatctc
ttccttctctcctctttccccacagcctggctccgtggagggagcggagg
agaaggagcgctttgcagcaaatgcccatgctggccttatggtacctgcc
ttgctctgctgcccatgcctgcctgtctttgtttatttctattgcttttt
ttttcccctcctttaaacaaaatttgaacttttctctgccctgcctttct
ctcctgtctgcctttttatggttgatgttgtattgtctcttctaaaggat
gccattaaaaatcacacctagtgtgtgcttttagcatgccgatgttctcc
ttgtgttgccctccttgtctttgaaattttcctaaggaatactttagagt
cttcatggtaaatctctctctctctcttttttttttctctcagttcagcc
atttcaaggactaagacagtcttacgttaaagtaaaaaaccgtgaccagc
actccagggaagact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64149213_64150184
seq2: B6Ng01-334B03.b_49_1019

seq1  GAATTCAAAGCTGTATGTTGCAGCTGGCACATTCTATGGGTGTGATTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCTGTATGTTGCAGCTGGCACATTCTATGGGTGTGATTTAG  50

seq1  GTAAGAAATCCAGGCAGTGGACCCAGAAGGAAAGGAAAGGACTTGGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAATCCAGGCAGTGGACCCAGAAGGAAAGGAAAGGACTTGGCCCT  100

seq1  ACATCAAAAGATTGGCAGAAGAATGTAATTTTGTATGTTTTAAGTTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAAAGATTGGCAGAAGAATGTAATTTTGTATGTTTTAAGTTAAAA  150

seq1  TAAAATGTTTAATGTAGCAACCCCTTGACCTAGTAAATCCACTCCCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTTTAATGTAGCAACCCCTTGACCTAGTAAATCCACTCCCAAGG  200

seq1  ATAAACCTAAAAGAAATAGAAACATATGTCCACCGAATTCTTAGGCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCTAAAAGAAATAGAAACATATGTCCACCGAATTCTTAGGCAAGT  250

seq1  GTGTTCATAGCAGCTTGGGTACTGTTGCCCCATGTTGGGGATCCAAACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATAGCAGCTTGGGTACTGTTGCCCCATGTTGGGGATCCAAACAC  300

seq1  CCATCAAGAGGAGAAAAAGAAAATGAATTAAGATATAGTCTTGTATGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAGAGGAGAAAAAGAAAATGAATTAAGATATAGTCTTGTATGAAA  350

seq1  TAGGTGCAACAAGAAGGAAGAATGAACACAAACATGTGGATAACTCTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGCAACAAGAAGGAAGAATGAACACAAACATGTGGATAACTCTCAT  400

seq1  AAACATGGTACCAAGTAAGAAAAACCTGAGAAAAATGAGCCCAGACCGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGGTACCAAGTAAGAAAAACCTGAGAAAAATGAGCCCAGACCGTC  450

seq1  TAATTTCAACTACTCTAGGGAAGACAACTCCAGAACATTCTCAGACAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCAACTACTCTAGGGAAGACAACTCCAGAACATTCTCAGACAATA  500

seq1  TTAGTGTCTGGTGTCTTTATAGGCTTGGGGGTGGCACACCTGTTTAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTCTGGTGTCTTTATAGGCTTGGGGGTGGCACACCTGTTTAGACA  550

seq1  TTCCCATCTAGGAATCCTTATTCTGGGTGAAGAATGGGAAACAATGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATCTAGGAATCCTTATTCTGGGTGAAGAATGGGAAACAATGTTTT  600

seq1  AATGTTCACCTGAAGATTTGCCTAAAGCCTCTCTGATACAAGCTAACATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCACCTGAAGATTTGCCTAAAGCCTCTCTGATACAAGCTAACATC  650

seq1  TGAATTGAACCTAATACAACACCTAATTCTCTCCTTGCAGTGATGAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGAACCTAATACAACACCTAATTCTCTCCTTGCAGTGATGAGACA  700

seq1  AGGCGTCTGTATGTACAGCGCATGTCAGCTGTGGACAAAAGCAATTGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTCTGTATGTACAGCGCATGTCAGCTGTGGACAAAAGCAATTGCTA  750

seq1  GCTAGCTGAAGCCCTGTAACTTCCTCTGGGTCTAGGATTATGCAACACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTGAAGCCCTGTAACTTCCTCTGGGTCTAGGATTATGCAACACTG  800

seq1  AAATAAGTTCTGCAAATATCAGAGAAGAAAATGGGATCTGTCACAATGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTTCTGCAAATATCAGAGAAGAAAATGGGATCTGTCACAATGAC  850

seq1  AGAAGACAAGCAGCCTAAAAGGACAAACTTCTCACAAGACTTGCTATACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAAGCAGCCTAAAAGGACAAACTTCTCACAAGACTTGCTATACA  900

seq1  AGCACAAGGGTCTGAATGCAGATCCTAGCACCCAATATATATATATATAT  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGCACAAGGGTCTGAATGCAGATCCTAGCACCC-ATATATATATATATAT  949

seq1  ATATATATATATATATATATAT  972
      ||||||||||||||||||||||
seq2  ATATATATATATATATATATAT  971

seq1: chr13_64297911_64298928
seq2: B6Ng01-334B03.g_69_1083 (reverse)

seq1  AGTCTTCCCTGGAGTGCTGGTCACCGTTTTTTTACTTTAACGTAAGACTG  50
      ||||||||||||||||||||||| || |||||||||||||||||||||||
seq2  AGTCTTCCCTGGAGTGCTGGTCA-CGGTTTTTTACTTTAACGTAAGACTG  49

seq1  TCTTAGTCCTTGAAATGGCTGGACTGAGGAGAAAAAAAAAAAGAGAGAGA  100
      ||||||||||||||||||||| ||||| ||| ||||||||||||||||||
seq2  TCTTAGTCCTTGAAATGGCTGAACTGA-GAG-AAAAAAAAAAGAGAGAGA  97

seq1  GAGAGATTTACCATGAAGACTCTAAAGTATTCCTTAGGAAAATTTCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATTTACCATGAAGACTCTAAAGTATTCCTTAGGAAAATTTCAAAG  147

seq1  ACAAGGAGGGCAACACAAGGAGAACATCGGCATGCTAAAAGCACACACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAGGGCAACACAAGGAGAACATCGGCATGCTAAAAGCACACACTA  197

seq1  GGTGTGATTTTTAATGGCATCCTTTAGAAGAGACAATACAACATCAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGATTTTTAATGGCATCCTTTAGAAGAGACAATACAACATCAACCA  247

seq1  TAAAAAGGCAGACAGGAGAGAAAGGCAGGGCAGAGAAAAGTTCAAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGCAGACAGGAGAGAAAGGCAGGGCAGAGAAAAGTTCAAATTTT  297

seq1  GTTTAAAGGAGGGGAAAAAAAAAGCAATAGAAATAAACAAAGACAGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAGGAGGGGAAAAAAAAAGCAATAGAAATAAACAAAGACAGGCAG  347

seq1  GCATGGGCAGCAGAGCAAGGCAGGTACCATAAGGCCAGCATGGGCATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGCAGCAGAGCAAGGCAGGTACCATAAGGCCAGCATGGGCATTTG  397

seq1  CTGCAAAGCGCTCCTTCTCCTCCGCTCCCTCCACGGAGCCAGGCTGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAGCGCTCCTTCTCCTCCGCTCCCTCCACGGAGCCAGGCTGTGGG  447

seq1  GAAAGAGGAGAGAAGGAAGAGATAAAGAGGAATTACTGGGTGGTTTCGAG  500
      |||||||||||||||||||                  |||||||||||||
seq2  GAAAGAGGAGAGAAGGAAGNNNNNNNNNNNNNNNNNNGGGTGGTTTCGAG  497

seq1  CCAGGCCCATCCTCTTGGAGCACTTGGCCTGTCTGTAAAGAGATCTGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCCATCCTCTTGGAGCACTTGGCCTGTCTGTAAAGAGATCTGGGC  547

seq1  AGGGACAGCCAAGGGCCCCTCTGGGCTCACCCAAAATCAACCTAACTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGCCAAGGGCCCCTCTGGGCTCACCCAAAATCAACCTAACTCAC  597

seq1  CCTTCCTCTCTTTCTTTCTCCCACAATGTGCTGTTATACCTCAAACTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCTCTTTCTTTCTCCCACAATGTGCTGTTATACCTCAAACTCAT  647

seq1  TAGCAACTTTCAGAGAAAAAGGAAAAGAAGAAAGTACAAATGAGAAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACTTTCAGAGAAAAAGGAAAAGAAGAAAGTACAAATGAGAAAAGA  697

seq1  CAAACCCACCTATGAAATTACTTCTGATCCGGAGACGACCCTCACTTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCACCTATGAAATTACTTCTGATCCGGAGACGACCCTCACTTGGA  747

seq1  AAGCGAAGACTGACCCGAACTGGGTGCATAGTTTTTACACACTGGAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGAAGACTGACCCGAACTGGGTGCATAGTTTTTACACACTGGAGCAG  797

seq1  AGAGTCTTGAGTGCAAAGACAATCTCTGGGTCGAGTCAAGTGGAAATGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTTGAGTGCAAAGACAATCTCTGGGTCGAGTCAAGTGGAAATGTA  847

seq1  TCTGCCATTCCACAGGATGTTAGCTTAAGAAGAATAGAGGGAGAACATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCATTCCACAGGATGTTAGCTTAAGAAGAATAGAGGGAGAACATCC  897

seq1  TGGGGTTCCTGGAGATAATGGCCGATGAAATATGAAATCCCGGAAGCAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTCCTGGAGATAATGGCCGATGAAATATGAAATCCCGGAAGCAAC  947

seq1  GGAACAGAAACCAGGAGCTGAGGCCCAGAGAGCTATGATGCAATGACAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGAAACCAGGAGCTGAGGCCCAGAGAGCTATGATGCAATGACAGG  997

seq1  CAAGACGGAAATGAATTC  1018
      ||||||||||||||||||
seq2  CAAGACGGAAATGAATTC  1015