BAC Information

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BAC

Clone NameB6Ng01-334C23
Chromosome13 (Build37)8 (Build37)
Map Location 48,295,126 - 48,295,442119,160,841 - 119,161,828
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneIbrdc2, 4931429P17Rik
Downstream geneId4, LOC667351, Zfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334C23.bB6Ng01-334C23.g
ACCGA119752GA119753
length1,1541,156
definitionB6Ng01-334C23.b B6Ng01-334C23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,295,126 - 48,295,442)(119,160,841 - 119,161,828)
sequence
gaattcaccaatcctgacacagcaaagccagcaaaccactaatatcaata
caggagaataaaaagacaattaaaaaccttcctctaaaaccgaagcacca
ctaccaagtacaaagccacagggaccagcaaactttcccagcaaaattct
aaagataaacaatctttacttcccaaataaaagacacaaatgtactaatt
agagtaaaataaaacaaaacaaaacaaaacaagtatttgttatctctaag
aaaaataccttactgacaaaggcattcataacctgagagcgacagggtag
aagttggtcagttcaccacgcaaacagaagccaaatatcagttggtagag
ctaatctgataactgatgaggtgacttcaaacaaaaattagaagacttgg
ttgtttgaataggtatggtgcccataggctcatgggtttgagttcttggc
ccatagggagtggcgctattaggaggtatggtcttgttggagtaggtgag
gccttgttgcaggaagtgtgccactgtggtggtgggcttggaagtgtcct
atgctcaagttgcacctaatgtggaatccagtctcctccttgctgtctgc
ggatgtagaactctcagctcctccagcaccatgtctgccggaacactgcc
atgtttcacgatgccatacctcctaccattataacaatggattaaacctc
tgaaactgcaagccagcctcaatgaaacatgtctttatacgagttgccat
ggtcatggtgtctcttcacagcaataaaaccctaagacagaagtgataaa
gaatgctactacatattattggcttattactgcgtttgatgcatttgcac
tcattgaacgccgagacgcccaacttcaggaaactaattgaaaaaaaaaa
aaaggacagataggtcctgagataataatatcaaatggctttaatacctc
actcttatcaaaagtagttcattctgactaaaagatcaataaagaaagtt
caattcagatttaatcttctctgcagatcaagcatacttaacacaaatct
tgtagggttctataccattttgctcaatagatgcagactattatattctg
cctcaacagccttatgagcccttttgctaaaagagccccatttggggaat
ggaa

gaattcagcacaaactccagactgtagttggtaaatttgcttctcatacg
gataaaaaaaagaaaagaaaaaaacagacttggacacatacatacataca
tatacacatacatgtgcatatacatatatatatatatatacacacacaca
cgcacatatatatacacatacatatgcatatacatatgtatatgtgcatt
catacacatatctatacacatattaggcttaaacaaataactggaaaact
gaaggctctggaagccaggttccccactggtgatgaagttacagataaga
tgaccctttgataggaattagagtaagaactcttgtttagcgctcatgca
cacacacacacacacacacacacacacacacacctataacatagaaatat
gctgcttccgtgggccatgggtcggtgcacacacataaaagcatccccta
cattacactctgagagcggctagaagcagagacacccacccaacagccat
gaacccactttcctcatttatgattctccaacagaaggaaccagggtccc
ccagagaatccttagacagatgtgtaccaaatgaacctggagggtcttgc
aatgcccacaaaggtgagggcatggaaaatgagtcaacagaaggagttgc
acatgaccagagctgggacacttactttcaaggacaacatctgcaggtgg
tgcattatgaactaaagcgcaacgactgcccctaagcaggccagcacaag
tgagttaggtgatcagtacctggcagagtgcgctcgctatggctcgacgc
tggtttaggaaaataaagtttcactggcacgcgcccatgccctctcctat
acgttatacctgtggtcttcactgcagcacaggagcgggcttgtgactgg
agactgaacagcatgcaagccaaaccacttactatcccatcatagaaagg
tctagaatgaacaagcacggtgacagaaggaatctgagattacgccaaat
agaaacattaaagaccagataatgtgggtcagagagatgctcagtcagaa
gtttgtcacacaagcctggggatggtggagttgatttctagcacccatat
agaaggggagtagagaagccgatgactgacttggttctcttccctccacc
tgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_48295126_48295442
seq2: B6Ng01-334C23.b_778_1146 (reverse)

seq1  CAGAATATAATAGTCTAAGTGCTTTGTAATCATCAATGTCTAGGGCACAA  50
      ||||||||||||||||   |   |||  | ||  |  || |||  | | |
seq2  CAGAATATAATAGTCTGCATCTATTG--AGCAAAATGGTATAGAACCCTA  48

seq1  ATATCAGGCATGCTTGAAAATATGCATTGTAATC-ACAGCACAAGAAAAG  99
          || |  |  |   || ||||| |||  |||  ||| | ||||  | 
seq2  ----CAAGATTTGTGTTAAGTATGC-TTG--ATCTGCAG-AGAAGATTAA  90

seq1  AACCACAGTAAACTAATATCTCCCATCTTCT-GACA-AAGAAACCA----  143
      | |   | | ||||    |     ||||| | | || ||  ||| |    
seq2  ATCTGAATTGAACTTTCTTTATTGATCTTTTAGTCAGAATGAACTACTTT  140

seq1  --GGAAGAGAGAAGCGTTGAAGACGGACTGAACTGGAAGTAGAACAT--G  189
          ||||| || |  || ||| |      |  ||  | ||  |  |  |
seq2  TGATAAGAGTGAGGTATTAAAGCC------ATTTGATATTATTATCTCAG  184

seq1  GACTGAAATGTTAACCTATGTTCT------------GGACCTG-AGTTGG  226
      |||  |  |||   ||| | || |               |||| ||||||
seq2  GACCTATCTGT---CCTTTTTTTTTTTTTCAATTAGTTTCCTGAAGTTGG  231

seq1  -------------TAA--AGTCCTTA-----CAAACCC-----GAAGATA  251
                    ||  ||| |  |     ||||| |      |||  |
seq2  GCGTCTCGGCGTTCAATGAGTGCAAATGCATCAAACGCAGTAATAAGCCA  281

seq1  AGGATCTATCATAG--------------------TTACTGTTTTATTGCT  281
      |  || | |  |||                    |||  |||||||||||
seq2  ATAATATGTAGTAGCATTCTTTATCACTTCTGTCTTAGGGTTTTATTGCT  331

seq1  GTGAAGAGACACCATGACCAAGGCAAGT--TATAAAGA  317
      |||||||||||||||||||| ||||| |  ||||||||
seq2  GTGAAGAGACACCATGACCATGGCAACTCGTATAAAGA  369


seq1: chr8_119160841_119161828
seq2: B6Ng01-334C23.g_241_1219

seq1  ATATACATATGTATATGTGCATTCATACACATATCTATACACATATTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATATGTATATGTGCATTCATACACATATCTATACACATATTAGG  50

seq1  CTTAAACAAATAACTGGAAAACTGAAGGCTCTGGAAGCCAGGTTCCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACAAATAACTGGAAAACTGAAGGCTCTGGAAGCCAGGTTCCCCAC  100

seq1  TGGTGATGAAGTTACAGATAAGATGACCCTTTGATAGGAATTAGAGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATGAAGTTACAGATAAGATGACCCTTTGATAGGAATTAGAGTAAG  150

seq1  AACTCTTGTTTAGCGCTCATGCACACACACACACACACACACACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTGTTTAGCGCTCATGCACACACACACACACACACACACACACAC  200

seq1  ACACACCTATAACATAGAAATATGCTGCTTCCGTGGGCCATGGGTCGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCTATAACATAGAAATATGCTGCTTCCGTGGGCCATGGGTCGGTG  250

seq1  CACACACATAAAAGCATCCCCTACATTACACTCTGAGAGCGGCTAGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATAAAAGCATCCCCTACATTACACTCTGAGAGCGGCTAGAAGC  300

seq1  AGAGACACCCACCCAACAGCCATGAACCCACTTTCCTCATTTATGATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACCCACCCAACAGCCATGAACCCACTTTCCTCATTTATGATTCT  350

seq1  CCAACAGAAGGAACCAGGGTCCCCCAGAGAATCCTTAGACAGATGTGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGAAGGAACCAGGGTCCCCCAGAGAATCCTTAGACAGATGTGTAC  400

seq1  CAAATGAACCTGGAGGGTCTTGCAATGCCCACAAAGGTGAGGGCATGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAACCTGGAGGGTCTTGCAATGCCCACAAAGGTGAGGGCATGGAA  450

seq1  AATGAGTCAACAGAAGGAGTTGCACATGACCAGAGCTGGGACACTTACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTCAACAGAAGGAGTTGCACATGACCAGAGCTGGGACACTTACTT  500

seq1  TCAAGGACAACATCTGCAGGTGGTGCATTATGAACTAAAGCGCAACGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGACAACATCTGCAGGTGGTGCATTATGAACTAAAGCGCAACGACT  550

seq1  GCCCCTAAGCAGGCCAGCACAAGTGAGTTAGGTGATCAGTACCTGGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTAAGCAGGCCAGCACAAGTGAGTTAGGTGATCAGTACCTGGCAGA  600

seq1  GTGCGCTCGCTATGGCTCGACGCTGGTTTAGGAAAATAAAGTTTCACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCTCGCTATGGCTCGACGCTGGTTTAGGAAAATAAAGTTTCACTGG  650

seq1  CACGCGCCCATGCCCTCTCCTATACGTTATACCTGTGGTCTTCACTGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CACGCGCCCATGCCCTCTCCTATACGTTATACCTGTGGTCTTCACTGCA-  699

seq1  GCACAGGAGCGGGCTTGTGACTGGAGACTGAACAGCATGCAAGCCAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCACAGGAGCGGGCTTGTGACTGGAGACTGAACAGCATGCAAGCC-AAAC  748

seq1  CACTTACTATCCCATCATAGAAAGGTCTAGAATGAACAAGCACGGTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACTATCCCATCATAGAAAGGTCTAGAATGAACAAGCACGGTGACA  798

seq1  GAAGGAATCTGAGAATTACGCCAAATAAGAAACATTAAAAAAAACAAAGA  850
      ||||||||||||| |||||||||||| |||||||||||       | |  
seq2  GAAGGAATCTGAG-ATTACGCCAAAT-AGAAACATTAA-------AGACC  839

seq1  AAAAAAGGTGGGTCAGAGAGATGGCTCAGTCAG-AGTTTGTCACACAAGC  899
      | | || ||||||||||||||| |||||||||| ||||||||||||||||
seq2  AGATAATGTGGGTCAGAGAGAT-GCTCAGTCAGAAGTTTGTCACACAAGC  888

seq1  CTGGGGAT-GTGAGTTTGATTTCTAGCACCCATATAGA--GGGAGTAGAG  946
      |||||||| |||   |||||||||||||||||||||||  ||||||||||
seq2  CTGGGGATGGTGGAGTTGATTTCTAGCACCCATATAGAAGGGGAGTAGAG  938

seq1  -AGCCGATGACAGGAACTGGTTTCTCTTCCCTCCAACTGTGTG  988
       |||||||||| |  ||| | |||||||||||||| |||||||
seq2  AAGCCGATGACTG--ACTTGGTTCTCTTCCCTCCACCTGTGTG  979


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