BAC Information

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BAC

Clone NameB6Ng01-334F20
Chromosome13 (Build37)
Map Location 95,645,236 - 95,646,377
singlet/doubletsinglet
Overlap geneOtp
Upstream geneArsb, Cycs-ps3, Lhfpl2, Scamp1, LOC435378, ENSMUSG00000042857, Ap3b1, Tbca
Downstream geneWdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334F20.bB6Ng01-334F20.g
ACCGA119885GA119886
length1,1451,198
definitionB6Ng01-334F20.b B6Ng01-334F20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaacttttctctcccgagaaataaacggctcgtccctccccgtca
ctggtaacaccgagtcccttgtagaaggcagggatgcccgagaggatgag
ttgggcttttcttctcaaccagcacacttagcaaatccaccttcatacag
cggcttctccttcacaaaggagaagatttttttttaaaaaaagaaaacaa
atttaagcacacttagaggagaaggtgatgatagaaaggaagaaggggaa
aaagggatgaaagaaattccaaatcaaagcaaacaagagtggaaaaagag
agaaacacctccaaacaaattatcgcgggctagaactccttccaaaaata
ataatattaataatgaaggggagagagaaagaaaaaaataagaaaaacaa
aaaggtgtcagcatccccaactccgttttgttttggaatctacatattcc
atagattttttttaagacgatgttaaatcaaattaaactttaatacagca
caattacttttaaagaaattagtccatttagggcgcattaaggtaaaata
aggaacaaattgacaatttcctgccccggcttctcctggctgcccgggtg
agaggcgctcactcacctagcctggcgtccaggaggtcggcgtgagacag
catcgcgcaccgctccagggcgaaagctgttcccccccaaattttagcgg
ctttaagttatttaaaatagatataagctataagctatacgatatagata
tatatagatcacctaaatgaaagaaaattcggtttgtggttaaaaagggg
gcttcttgcattataatgtcctttagagagacggggaggtgcttaacaga
tgaatgaacccgtgagcagctcggcgaggggaccaatcaggagggcagcc
tgcaaatgtcagcgcccggagagtcccccactccgcccgcccgcccgcct
gcgcctgccgggaggaggcggcggccgcagctcaagcagctccagctcca
gcagccgctaaagcagcagcggccaccttgggcttcgccctgggcctctg
gggccggagcccggtcagtctttcccagagaattttctcggaccatcttc
ccctttctttgtcctggctgcttcgctttcacagggctttgtgta
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
tttcaaggtccgccctatgcggagcccccgccctgcgtagtgcgtcagca
atgcgcagagagatgcgcagagaggcaatgcgcagagagatgcgcagaga
ggcaatgcgcagagagatgcgcagagaggcagtgcgcagagaggcagtac
gcagagaggcagtgcgcagactcattcattcccagagaggaacaaaggaa
aatacaacaggcatttccagtctttgaaggagccgagggtgggcgtgtcc
acgctccggtagaatacttacaaattaaagagcttgccgagtcggtccgt
aaatatggaaccaatgctaattttaccttggtgcagttagacaggctcgc
cggcatggcactaactcctgctgactggcaaacggttgtaaaagccgctc
tccctagtatgggcaaatatatggaatggagagctctttggcatgaaact
gcacaagcgcaggcccgagcaaacgcagctgctttgactccagagcagag
agattggacttttgacttgttaacgggtcagggagcttattctgctgatc
aaacaaactaccattggggagcttatgcccagatttcttccacggctatt
agggcctggaaggcgctctcccgagcaggtgaaaccactggtcaattaac
aaaagttgtccagggacctcaggaatccttctcagattttgtggccagaa
tgacagaggcagcagagcgtatttttggagagtcagagcaagctgcgcct
ctgatagaacagctcatctatgagcaagccacaaaggagtgccgagcggc
catagccccaagaaagaacaaaggcttacagactggctcaggtctgtcga
gagcttggggacctctcaccatgcaggcttagcggccgcatcttcaatct
cagacgctccatgggcagaaatgatcagagacatgtttattggcgaaagc
tggcatttaagaaagaattgcaagctcagataaacaggcagggacctctc
actctttgctctaagtgtggtcaaggggttatatccaatagaggacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_95645236_95646377
seq2: B6Ng01-334F20.b_47_1191 (reverse)

seq1  TACACAGAG-CCTGTG-AAGCGAGCAAGGCAGGACAAGGAAAGGGG-AGA  47
      |||||| || |||||| ||||||   || |||||||| |||||||| |||
seq2  TACACAAAGCCCTGTGAAAGCGAAGCAGCCAGGACAAAGAAAGGGGAAGA  50

seq1  TGTGCCCGGAGAAAA-TCTCTGGGAAGAACTGACCGAGGCTC--GGCCCA  94
      ||  ||  ||||||| ||||||||||  |||||||| |||||  | ||||
seq2  TGGTCC--GAGAAAATTCTCTGGGAAAGACTGACCG-GGCTCCGGCCCCA  97

seq1  GAGGCCCAGGGCG-AGGCCAAGGTGGCCGCTGCTGCTTTAGCGGCTGCTG  143
      ||||||||||||| || |||||||||||||||||||||||||||||||||
seq2  GAGGCCCAGGGCGAAGCCCAAGGTGGCCGCTGCTGCTTTAGCGGCTGCTG  147

seq1  GAGGCTGGAGCTGCCTGGGCTGCGGCCGCCGCCTCCTCCCGGCAGGCGCA  193
      || ||||||||||| || ||||||||||||||||||||||||||||||||
seq2  GA-GCTGGAGCTGCTTGAGCTGCGGCCGCCGCCTCCTCCCGGCAGGCGCA  196

seq1  GGCGGGCGGGCGGGCGGAGTGGGGGACTCTCCGGGCGCTGACATTTGCAG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGCGGGCGGGCGGAGTGGGGGACTCTCCGGGCGCTGACATTTGCAG  246

seq1  GCTGCCCTCCTGATTGGTCCCCTCGCCGAGCTGCTCACGGGTTCATTCAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCTCCTGATTGGTCCCCTCGCCGAGCTGCTCACGGGTTCATTCAT  296

seq1  CTGTTAAGCACCTCCCCGTCTCTCTAAAGGACATTATAATGCAAGAAGCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAGCACCTCCCCGTCTCTCTAAAGGACATTATAATGCAAGAAGCC  346

seq1  CCCTTTTTAACCACAAACCGAATTTTCTTTCATTTAGGTGATCTATATAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTTAACCACAAACCGAATTTTCTTTCATTTAGGTGATCTATATAT  396

seq1  ATCTATATCGTATAGCTTATAGCTTATATCTATTTTAAATAACTTAAAGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATCGTATAGCTTATAGCTTATATCTATTTTAAATAACTTAAAGC  446

seq1  CGCTAAAATTTGGGGGGGAACAGCTTTCGCCCTGGAGCGGTGCGCGATGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAAAATTTGGGGGGGAACAGCTTTCGCCCTGGAGCGGTGCGCGATGC  496

seq1  TGTCTCACGCCGACCTCCTGGACGCCAGGCTAGGTGAGTGAGCGCCTCTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCACGCCGACCTCCTGGACGCCAGGCTAGGTGAGTGAGCGCCTCTC  546

seq1  ACCCGGGCAGCCAGGAGAAGCCGGGGCAGGAAATTGTCAATTTGTTCCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGGCAGCCAGGAGAAGCCGGGGCAGGAAATTGTCAATTTGTTCCTT  596

seq1  ATTTTACCTTAATGCGCCCTAAATGGACTAATTTCTTTAAAAGTAATTGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACCTTAATGCGCCCTAAATGGACTAATTTCTTTAAAAGTAATTGT  646

seq1  GCTGTATTAAAGTTTAATTTGATTTAACATCGTCTTAAAAAAAATCTATG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATTAAAGTTTAATTTGATTTAACATCGTCTTAAAAAAAATCTATG  696

seq1  GAATATGTAGATTCCAAAACAAAACGGAGTTGGGGATGCTGACACCTTTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGTAGATTCCAAAACAAAACGGAGTTGGGGATGCTGACACCTTTT  746

seq1  TGTTTTTCTTATTTTTTTCTTTCTCTCTCCCCTTCATTATTAATATTATT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTTATTTTTTTCTTTCTCTCTCCCCTTCATTATTAATATTATT  796

seq1  ATTTTTGGAAGGAGTTCTAGCCCGCGATAATTTGTTTGGAGGTGTTTCTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGGAAGGAGTTCTAGCCCGCGATAATTTGTTTGGAGGTGTTTCTC  846

seq1  TCTTTTTCCACTCTTGTTTGCTTTGATTTGGAATTTCTTTCATCCCTTTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCCACTCTTGTTTGCTTTGATTTGGAATTTCTTTCATCCCTTTT  896

seq1  TCCCCTTCTTCCTTTCTATCATCACCTTCTCCTCTAAGTGTGCTTAAATT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCTTCCTTTCTATCATCACCTTCTCCTCTAAGTGTGCTTAAATT  946

seq1  TGTTTTCTTTTTTTAAAAAAAAATCTTCTCCTTTGTGAAGGAGAAGCCGC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTTTTTTAAAAAAAAATCTTCTCCTTTGTGAAGGAGAAGCCGC  996

seq1  TGTATGAAGGTGGATTTGCTAAGTGTGCTGGTTGAGAAGAAAAGCCCAAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAAGGTGGATTTGCTAAGTGTGCTGGTTGAGAAGAAAAGCCCAAC  1046

seq1  TCATCCTCTCGGGCATCCCTGCCTTCTACAAGGGACTCGGTGTTACCAGT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTCTCGGGCATCCCTGCCTTCTACAAGGGACTCGGTGTTACCAGT  1096

seq1  GACGGGGAGGGACGAGCCGTTTATTTCTCGGGAGAGAAAAGTTGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGGGAGGGACGAGCCGTTTATTTCTCGGGAGAGAAAAGTTGAATTC  1145