BAC Information

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BAC

Clone NameB6Ng01-334I17
Chromosome13 (Build37)
Map Location 50,583,325 - 50,584,532
singlet/doubletsinglet
Overlap genenone
Upstream geneCenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806
Downstream geneEG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334I17.bB6Ng01-334I17.g
ACCGA120023GA120024
length1,2651,199
definitionB6Ng01-334I17.b B6Ng01-334I17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccactttccttggtcagggggtacaggggggcggccagtgttg
caaacccaggtatagaaagtctgcagaacccagcagtgcccaagaattct
ctcacctgtcttggagtagccggttttggtatttgagtcatagtcctttt
tctagcctctgtcagcctcatttttcatcccggagggtatatcccaagta
gactacttctatctgacatagctgggctttttcagcagaggaccggtaac
ccaactcacccagatctgctagcaatctcttggctccctgccagcattct
ctctccatggttgcagcaaggagcaagtcatcaacatattgaagccgagt
tatctgggagttttcagctcagaaggaggctaaatctcgatgtagagcct
catcaaaaagggtgggggattttttgaccctctggggtcaccgtgtccag
gtcaattgtcccatttgtccagtgtcaggatctctccactcaaaggcaaa
tattggctggctggagggatgtaacttcaggcaaaagaaagcatctttta
aatcaagtattgtgtaccatttttgctccggagggagtgagctgaggagg
ttatagggattaggaacagatgtgtgaaaatcttggaccctcttattgac
ttctctcagatcttggatgggttgttagtcactcttgccagatttcttta
ccagcagtaaaggagtattccatggtaactggcaagataccaaaattcct
aattgtaatagtctctgaatatgttccctgattccatctcttgcttcatg
gctcactgggtattgttgcactcctataggggttgcatccgtcttcagtc
ccacaaccacagggggaattgtgacaaccatttccatgcctccagtctct
gcccatgctctagggaaagcagtcaaccaatcttttagtctggcatccac
ccagccacccactcagaactccatgtcctggcattccctacactggggca
tgggaccttcccaggaccaagggcttctcctcccactcatgttccaacaa
ggccattctgggctacaaacgtggctggagacatgggtactcaatgggtc
tcctttggttgatgggttagttccgtgaatcttgggggactggttagtga
attggttcaacaaatatctccttaactttctctccccacttgccaatgtc
tcaggtccaatccatctattcttgtacggaatacttaaatcctaattatc
tgtgtctggtgtagt
gaattccctcatcccaacccactgttacacccctaggtgaattcagcact
gggtctacaccaacttaccctagtccatagactttttgcacctccaacaa
cgcctccaaaagaagaaatttatacctagtactagtatcaatgctgtacg
ttgtttactgtaacttcttccattttctgtggattcaccaaagacagggc
tcctcagttgacctccccacaaccttgttcaaccacacattggacaccag
ttatatctgtccagcagccacagagaactgagtacacctgaaagggagga
tgggaatgaaaaaggacaggcaggtgagagaagaatgaagccaagacaga
gatgtctgaggagggctcaaagtttaatattcagctttgtgtttatatag
gcaaaccccaaagacacatccttttgtttcagctggattgagttgcaaag
caagctcagcaggtaatcaactcctcaaagctcaaaactcaaagttggaa
gttgcaaatgcagcaaggccaagggcagcctccagccaggttgtaaaacc
actggaggtttgtttagcctattcaaggctggggaagggcacattccccc
tgggtcttttaaatttcagatctggatctagcctcctaaagcaaactcat
cacactcctggatttcctggtctaaaagtgtggcagtgtattccaatcca
gcattcagtgctggctatggcaggtgcaccagagatctgcctgccaggga
ccaggaggctcagctcttacttatacaacaacatacaggtggtattgctt
ccaggttcatctctcctgatgcaacccagttttctacacactctgcaaag
catttgaaatcccccctccccctgccttttaattaaacagaaagaggggc
agaaccaggtctcctagtaatgttccatcttcacatacacacatttgagt
cctactctctgccctgagagaagcgtctagacagatggtctgagatccca
cactcagagccctggctagagccaggcctgtagagtgttctcccctcaga
ttcatagacaaagagatgcctaagagatacatatattttattattgccta
agcctcctacacgaggacaaacatacccgagagagtttggtgatcagcga
ttatggcagatatcagagaatacactgaaatataggtgaccttttcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_50583325_50584532
seq2: B6Ng01-334I17.g_69_1267 (reverse)

seq1  CAGGAAGA-GTCA-CTATATTCC--TGTATT-TCTGATACCTG-CATAAT  44
      |||||| | |||| ||||||| |  |||||| ||||||| ||| ||||||
seq2  CAGGAAAAGGTCACCTATATTTCAGTGTATTCTCTGATATCTGCCATAAT  50

seq1  CGCCTGGGATCACACAAAACTTCTTCTGGTATGTTTGTCCCTCGTGGTAG  94
      |||    |||  ||| |||||   || ||||||||||| |||||| ||||
seq2  CGC---TGAT--CACCAAACTCTCTCGGGTATGTTTGT-CCTCGT-GTAG  93

seq1  GAGCCT--AGCAATA--TAAATATATGTAATTCCTTCCTAGGCATCTCTT  140
      ||| ||   ||||||   |||||||||||  ||  || ||||||||||||
seq2  GAGGCTTAGGCAATAATAAAATATATGTA--TC--TCTTAGGCATCTCTT  139

seq1  TGTCTATGGATTCTGAGGGGAG-ACACTCTAACAGGCCTGGCTCTTAGCC  189
      ||||||| || ||||||||||| ||||||| ||||||||||||| |||||
seq2  TGTCTAT-GAATCTGAGGGGAGAACACTCT-ACAGGCCTGGCTC-TAGCC  186

seq1  AGGGCCTCTGAGTGTGGGATCTTCAGACCATCTGTCTTAGACCGCCTTCT  239
      |||| |||||||||||||||| |||||||||||||| |||||   |||||
seq2  AGGG-CTCTGAGTGTGGGATC-TCAGACCATCTGTC-TAGAC--GCTTCT  231

seq1  CTCAGGGCAGAGAGTAGGACTCAAATGTGTGTATGTTGAAGATGGAACAT  289
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTCAGGGCAGAGAGTAGGACTCAAATGTGTGTATG-TGAAGATGGAACAT  280

seq1  TACTAGGAGACCTGGTTCTGCCCCTCTTTCTGTTTAATTAAAAGGCAGGG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGGAGACCTGGTTCTGCCCCTCTTTCTGTTTAATTAAAAGGCAGGG  330

seq1  GGAGGGGGGATTTCAAATGCTTTGCAGAGTGTGTAGAAAACTGGGTTGCA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGGATTTCAAATGCTTTGCAGAGTGTGTAGAAAACTGGGTTGCA  380

seq1  TCAGGAGAGATGAACCTGGAAGCAATACCACCTGTATGTTGTTGTATAAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGAGATGAACCTGGAAGCAATACCACCTGTATGTTGTTGTATAAG  430

seq1  TAAGAGCTGAGCCTCCTGGTCCCTGGCAGGCAGATCTCTGGTGCACCTGC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCTGAGCCTCCTGGTCCCTGGCAGGCAGATCTCTGGTGCACCTGC  480

seq1  CATAGCCAGCACTGAATGCTGGATTGGAATACACTGCCACACTTTTAGAC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCAGCACTGAATGCTGGATTGGAATACACTGCCACACTTTTAGAC  530

seq1  CAGGAAATCCAGGAGTGTGATGAGTTTGCTTTAGGAGGCTAGATCCAGAT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAATCCAGGAGTGTGATGAGTTTGCTTTAGGAGGCTAGATCCAGAT  580

seq1  CTGAAATTTAAAAGACCCAGGGGGAATGTGCCCTTCCCCAGCCTTGAATA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTTAAAAGACCCAGGGGGAATGTGCCCTTCCCCAGCCTTGAATA  630

seq1  GGCTAAACAAACCTCCAGTGGTTTTACAACCTGGCTGGAGGCTGCCCTTG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAACAAACCTCCAGTGGTTTTACAACCTGGCTGGAGGCTGCCCTTG  680

seq1  GCCTTGCTGCATTTGCAACTTCCAACTTTGAGTTTTGAGCTTTGAGGAGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCTGCATTTGCAACTTCCAACTTTGAGTTTTGAGCTTTGAGGAGT  730

seq1  TGATTACCTGCTGAGCTTGCTTTGCAACTCAATCCAGCTGAAACAAAAGG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACCTGCTGAGCTTGCTTTGCAACTCAATCCAGCTGAAACAAAAGG  780

seq1  ATGTGTCTTTGGGGTTTGCCTATATAAACACAAAGCTGAATATTAAACTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTTTGGGGTTTGCCTATATAAACACAAAGCTGAATATTAAACTT  830

seq1  TGAGCCCTCCTCAGACATCTCTGTCTTGGCTTCATTCTTCTCTCACCTGC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCTCCTCAGACATCTCTGTCTTGGCTTCATTCTTCTCTCACCTGC  880

seq1  CTGTCCTTTTTCATTCCCATCCTCCCTTTCAGGTGTACTCAGTTCTCTGT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTTTTTCATTCCCATCCTCCCTTTCAGGTGTACTCAGTTCTCTGT  930

seq1  GGCTGCTGGACAGATATAACTGGTGTCCAATGTGTGGTTGAACAAGGTTG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGGACAGATATAACTGGTGTCCAATGTGTGGTTGAACAAGGTTG  980

seq1  TGGGGAGGTCAACTGAGGAGCCCTGTCTTTGGTGAATCCACAGAAAATGG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGTCAACTGAGGAGCCCTGTCTTTGGTGAATCCACAGAAAATGG  1030

seq1  AAGAAGTTACAGTAAACAACGTACAGCATTGATACTAGTACTAGGTATAA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTACAGTAAACAACGTACAGCATTGATACTAGTACTAGGTATAA  1080

seq1  ATTTCTTCTTTTGGAGGCGTTGTTGGAGGTGCAAAAAGTCTATGGACTAG  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCTTTTGGAGGCGTTGTTGGAGGTGCAAAAAGTCTATGGACTAG  1130

seq1  GGTAAGTTGGTGTAGACCCAGTGCTGAATTCACCTAGGGGTGTAACAGTG  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTTGGTGTAGACCCAGTGCTGAATTCACCTAGGGGTGTAACAGTG  1180

seq1  GGTTGGGATGAGGGAATTC  1208
      |||||||||||||||||||
seq2  GGTTGGGATGAGGGAATTC  1199