BAC Information

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BAC

Clone NameB6Ng01-335I04
Chromosome13 (Build37)
Map Location 98,883,187 - 98,884,339
singlet/doubletsinglet
Overlap geneRgnef
Upstream gene5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740
Downstream geneLOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335I04.bB6Ng01-335I04.g
ACCGA120713GA120714
length1,1771,135
definitionB6Ng01-335I04.b B6Ng01-335I04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattactatgattatttcgattagtagggcttttatttgcttatt
taattctttgcctatacagctaatagttgtgaaactgtgcttgagagctg
tgtcggcactgtgagtctctccatctctatcttcctgtcagagatgcctt
tggtaaggaagggcttggctgtggtccccgtgatccatgaacgggggctg
aacttgtcttaacttgtaaatcctctgcagtctgaggcacacagcctaac
accgcacagtcatatttgggagacggtcaagctgtgtcttttgtgcctat
tcactactaactgacaaattcatcagtagctcatgcatgcaactgatccc
tgtgggctcaggaacattaaaggttgtttctatggtagactcccctgctt
gggagactgcagaaacgatccattgtgactacagaacaaaaaccctctag
aaggaaaggtgagggggaaaaagataaagggtgttcttgcatttccaccg
tctgccacgatgcctgttggctctttgtatgtaagccttttatctaattt
tgacttattcagaatgttaagtatgattattttcctctttaaggctcaca
gatggcatgtgtcatttagcccaggctggcttcatatttgctaagtggct
gcctctggtcttgaactacattaaagcccagagagtataaaaggcatgtg
taaagttaaccgcggcttgtgtgatatcttgggactagggaacataggac
aaaagaaaggatggtgtgtatgagtagactggagggaagcacctctacct
cccttgatttgtagcccaaatgaatctctacattaacagttgcctctttt
cttaacacacacacacacacacacacacacatacacacacacacacacac
acacacacacacacaaacatgcatgcacacacatacacacacacacatac
cacacatacatatgttatgccctgattccaagggaaacccaggagagctc
agaactgcagagcccactgcaattttgcaacaagaacctcctttattatt
gcaaaaagaagttctgaacccggaattgccaaaccctccccaacagcaat
aaaattcaaggatgcaaaccacgagctctcaaggtttctctggcacttat
ataccagccaataagcttagaaattcc
gaattcaagaagttagactccagagaaccaaataactctattttaaaatg
gggaacagagctagatagagaattctcaactgaggaaactagaatggctg
agaagcacccaaagaaatgttcaacatctttagtcatcagggaaatgcaa
atcaaaacaaccctgagattccacctcacacaagtcaaaatggctaaaaa
atcaaaaactcaggtgacagaagatgctggtgaggatgtggagaaagagg
aacactcctccattgctggtgggattgcaagttggtacaaccactatgga
aatcagtctggcagttcctcagaaaattggacatagtatactacctgtgg
gcccagctataccaactcctgggcatatatccagaagatgctccaccatg
taataagaatatatgctctactatgttcatagcagccatatttataatag
caagaagctagaaacaacccagatgttcctcaacagaggatggatataga
aaatgtggtacatttacacactggaatactactactcagctattaaaaac
agtgacttcataaaatttgcaggcaaattgatagaacttgaaaatatcat
cctgagtgaggcaactcagatacaaaagaacacacacagtatgcactcac
tgatgagtagatattagcccaaaagtttggaatacccaagattcaattca
cagaccatatgaagcctaagaagaaggaagaccaaaatgtggatgcttca
gtgctttttagaaaggggaacaaaatactcacaggaggaaatatagagac
aaagtgttgagcagagactgaaggaaaggccatccagagactgtcccacc
tggatatccatcccatatacagccaccaaacccggatgctattgtggatg
ctgggaagggcttgctgtcaggagcctgataaagctgtcttctgagaaac
cctgccagagcctgacaaatacagagtgatgcttgcagtcaatcattgga
ttgagcataaggtccctatggagagttggagaaggactgaagctgatagt
ttgcagcctattagggagcaacatgtcaccagtaagatccgagctctggt
gactgaacacccatcaaagatgatacacctgtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_98883187_98884339
seq2: B6Ng01-335I04.b_51_1227 (reverse)

seq1  GGAATTTCTAA--CTAT--GCT-GTATATAAGTGCCA-AGACACCT---G  41
      |||||||||||   |||  ||| |||||||||||||| ||| ||||   |
seq2  GGAATTTCTAAGCTTATTGGCTGGTATATAAGTGCCAGAGAAACCTTGAG  50

seq1  AGCTCGTGG-TTGCACTCCTGA--TCTA-TGCTGT--GGGAAGGTTT-GC  84
      ||||||||| |||||  | |||  | || ||||||  |||| ||||| ||
seq2  AGCTCGTGGTTTGCATCCTTGAATTTTATTGCTGTTGGGGAGGGTTTGGC  100

seq1  AA-TCCGGG-TCAAGACT--CTTTTGCAATAATAAAGGAG--TCTTG-TG  127
      || |||||| |||  |||   |||||||||||||||||||  ||||| ||
seq2  AATTCCGGGTTCAGAACTTCTTTTTGCAATAATAAAGGAGGTTCTTGTTG  150

seq1  CAAAATTGCAGTGGGCTCTGCAGTTCTGAGCTCTCCTGGGTTTCCCTTGG  177
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTGCAGTGGGCTCTGCAGTTCTGAGCTCTCCTGGGTTTCCCTTGG  200

seq1  AATCAGGGCATAACATATGTATGTGTGGTATGTGTGTGTGTGTATGTGTG  227
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGGCATAACATATGTATGTGTGGTATGTGTGTGTGTGTATGTGTG  250

seq1  TGCATGCATGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTG  277
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGCATGCATGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTG  300

seq1  TGTGTGTGTGTGTGTGTGTGTGTTAAG-AAAGAGGCAACTGTTAATGTAG  326
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTTAAGAAAAGAGGCAACTGTTAATGTAG  350

seq1  AGATTCATTTGGGCTACAAATCAAGGGAGGTAGAGGTGCTTCCCTCCAGT  376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCATTTGGGCTACAAATCAAGGGAGGTAGAGGTGCTTCCCTCCAGT  400

seq1  CTACTCATACACACCATCCTTTCTTTTGTCCTATGTTCCCTAGTCCCAAG  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCATACACACCATCCTTTCTTTTGTCCTATGTTCCCTAGTCCCAAG  450

seq1  ATATCACACAAGCCGCGGTTAACTTTACACATGCCTTTTATACTCTCTGG  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACACAAGCCGCGGTTAACTTTACACATGCCTTTTATACTCTCTGG  500

seq1  GCTTTAATGTAGTTCAAGACCAGAGGCAGCCACTTAGCAAATATGAAGCC  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAATGTAGTTCAAGACCAGAGGCAGCCACTTAGCAAATATGAAGCC  550

seq1  AGCCTGGGCTAAATGACACATGCCATCTGTGAGCCTTAAAGAGGAAAATA  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGCTAAATGACACATGCCATCTGTGAGCCTTAAAGAGGAAAATA  600

seq1  ATCATACTTAACATTCTGAATAAGTCAAAATTAGATAAAAGGCTTACATA  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACTTAACATTCTGAATAAGTCAAAATTAGATAAAAGGCTTACATA  650

seq1  CAAAGAGCCAACAGGCATCGTGGCAGACGGTGGAAATGCAAGAACACCCT  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGCCAACAGGCATCGTGGCAGACGGTGGAAATGCAAGAACACCCT  700

seq1  TTATCTTTTTCCCCCTCACCTTTCCTTCTAGAGGGTTTTTGTTCTGTAGT  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTTTCCCCCTCACCTTTCCTTCTAGAGGGTTTTTGTTCTGTAGT  750

seq1  CACAATGGATCGTTTCTGCAGTCTCCCAAGCAGGGGAGTCTACCATAGAA  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGGATCGTTTCTGCAGTCTCCCAAGCAGGGGAGTCTACCATAGAA  800

seq1  ACAACCTTTAATGTTCCTGAGCCCACAGGGATCAGTTGCATGCATGAGCT  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTTTAATGTTCCTGAGCCCACAGGGATCAGTTGCATGCATGAGCT  850

seq1  ACTGATGAATTTGTCAGTTAGTAGTGAATAGGCACAAAAGACACAGCTTG  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGAATTTGTCAGTTAGTAGTGAATAGGCACAAAAGACACAGCTTG  900

seq1  ACCGTCTCCCAAATATGACTGTGCGGTGTTAGGCTGTGTGCCTCAGACTG  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCTCCCAAATATGACTGTGCGGTGTTAGGCTGTGTGCCTCAGACTG  950

seq1  CAGAGGATTTACAAGTTAAGACAAGTTCAGCCCCCGTTCATGGATCACGG  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGATTTACAAGTTAAGACAAGTTCAGCCCCCGTTCATGGATCACGG  1000

seq1  GGACCACAGCCAAGCCCTTCCTTACCAAAGGCATCTCTGACAGGAAGATA  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACAGCCAAGCCCTTCCTTACCAAAGGCATCTCTGACAGGAAGATA  1050

seq1  GAGATGGAGAGACTCACAGTGCCGACACAGCTCTCAAGCACAGTTTCACA  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGAGAGACTCACAGTGCCGACACAGCTCTCAAGCACAGTTTCACA  1100

seq1  ACTATTAGCTGTATAGGCAAAGAATTAAATAAGCAAATAAAAGCCCTACT  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTAGCTGTATAGGCAAAGAATTAAATAAGCAAATAAAAGCCCTACT  1150

seq1  AATCGAAATAATCATAGTAATGAATTC  1153
      |||||||||||||||||||||||||||
seq2  AATCGAAATAATCATAGTAATGAATTC  1177