BAC Information

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BAC

Clone NameB6Ng01-335I17
Chromosome13 (Build37)
Map Location 62,220,281 - 62,221,371
singlet/doubletsinglet
Overlap genenone
Upstream geneCtsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444
Downstream geneEG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335I17.bB6Ng01-335I17.g
ACCGA120735GA120736
length7911,081
definitionB6Ng01-335I17.b B6Ng01-335I17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttggctctgaaccccatcttttaatggggttatttgaat
ttatggagtccagcttcttgagctctttgtatatattggatattagtccc
ttatcagatttaggattggtaaaaattatttcccaatctgttcgtggcct
ttttgtcttattgacagtgtcttttgccttacagaagctttgcaatttta
tgaggtcccaatttgtcaattcttgaccaagccattgctgttctgtttag
gaattttgcccctgtgcccatatctttgaggctttcccccactttctcct
ctattaatttcagtgtctcttgtcttagtggaggtctttgatccgcttcg
acttgagctttgtacaaggagataagaatgatcaattcaacagaatccaa
gaacacatcaaaatgatcatccatcatgaccaagtaggcttcatcccagg
gatgcaggtgaaagactccgagaggagcccctggctcaggcctcaggaca
atagcagacacccaagaactcacgatagactaagcttgatgcaaaccaca
tgaggctttattcggggaatgccagagctctggggatgactcatatccca
cgcaggggtagaggagtcgacctcgaggggaaagaggacccagtttttat
aggccctcaggggggaaaggagaagagggggaagcaggggatttccagat
ctgaacaatgtctattctaaaatgattgattcctcaagatattgggttgg
gagggaaacaaggaaagagtctaatgaaggtgcacactccg
gaattctctgataagcactgtaccctatactttaagtgggatatttgggt
tgttggtgtctaacctcttgagttctttagaaatttgagtatcatccctc
tgccagatgaaggattattgaagattatgatccagtgtgtaggccgctgt
ttgatcctactgacagtgtcctttgccttacagaagttccgctgttttgt
ttttttgttttatgttttttaaagatttatttatttattttatgtatatg
agtacactatagttatcttcagacacaccagaagagggcatcagatccca
ttacagatggttgtgagccaccatgtggttgctggcaattgtactgagga
cttctggaaaagcagtcagtgctcttaaccactgagccatctctccagcc
caaaaatgtatgtatgatttgacaattcatgctccttcatatccccatta
gttatccatttggtacttcctcttgaattactgacttctgatagaattat
gtagagatgctagatattgcaagagcaatgagatgtattattttgttttg
tgttgtatgtgtgtgatgtgataattggcctttaggcccccatggatatg
tggagactggaagatgattttgtgtgatcacatttggccatctttataca
ttgatcaatatcagtttgccaaccttgcacaccggaagtgtttcgcactg
agccttctcatagatgctcaaataagattaggtgaatggtccctccatca
ggacttagttattccatgggtctaggatgatcgagacctgttagagaaac
cagcggagaaagggaagcgagaccagcaagacttcaaggtctgtttaatg
gaggctaagaacctggttataagaagaaagaaaaaataggaaggtgtcta
ggggggataataaaattcagagaaagggatggactctggggcagatgctg
atgcaaagcttctcttggaaagtccgcctctaaacagtttccggcagcct
tcaacattctgcatttatcttggatagctacgcttaacttaacagttcca
gcagccatcaatctcttttagcttttcttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62220281_62221371
seq2: B6Ng01-335I17.g_68_1148

seq1  GAATTCTCTGATAAGCACTGTACCCTATACTTTAAGTGGGATATTTGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGATAAGCACTGTACCCTATACTTTAAGTGGGATATTTGGGT  50

seq1  TGTTGGTGTCTAACCTCTTGAGTTCTTTAGAAATTTGAGTATCATCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTGTCTAACCTCTTGAGTTCTTTAGAAATTTGAGTATCATCCCTC  100

seq1  TGCCAGATGAAGGATTATTGAAGATTATGATCCAGTGTGTAGGCCGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGATGAAGGATTATTGAAGATTATGATCCAGTGTGTAGGCCGCTGT  150

seq1  TTGATCCTACTGACAGTGTCCTTTGCCTTACAGAAGTTCCGCTGTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCTACTGACAGTGTCCTTTGCCTTACAGAAGTTCCGCTGTTTTGT  200

seq1  TTTTTTGTTTTATGTTTTTTAAAGATTTATTTATTTATTTTATGTATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTATGTTTTTTAAAGATTTATTTATTTATTTTATGTATATG  250

seq1  AGTACACTATAGTTATCTTCAGACACACCAGAAGAGGGCATCAGATCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACTATAGTTATCTTCAGACACACCAGAAGAGGGCATCAGATCCCA  300

seq1  TTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGCAATTGTACTGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGCAATTGTACTGAGGA  350

seq1  CTTCTGGAAAAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGAAAAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCC  400

seq1  CAAAAATGTATGTATGATTTGACAATTCATGCTCCTTCATATCCCCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGTATGTATGATTTGACAATTCATGCTCCTTCATATCCCCATTA  450

seq1  GTTATCCATTTGGTACTTCCTCTTGAATTACTGACTTCTGATAGAATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCATTTGGTACTTCCTCTTGAATTACTGACTTCTGATAGAATTAT  500

seq1  GTAGAGATGCTAGATATTGCAAGAGCAATGAGATGTATTATTTTGTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGATGCTAGATATTGCAAGAGCAATGAGATGTATTATTTTGTTTTG  550

seq1  TGTTGTATGTGTGTGATGTGATAATTGGCCTTTAGGCCCCCATGGATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTATGTGTGTGATGTGATAATTGGCCTTTAGGCCCCCATGGATATG  600

seq1  TGGAGACTGGAAGATGATTTTGTGTGATCACATTTGGCCATCTTTATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACTGGAAGATGATTTTGTGTGATCACATTTGGCCATCTTTATACA  650

seq1  TTGATCAATATCAGTTTGCCAACCTTGCACACCGGAAGTGTTTCGCACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCAATATCAGTTTGCCAACCTTGCACACCGGAAGTGTTTCGCACTG  700

seq1  AGCCTTCTCATAGATGCTCAAATAAGATTAGGTGAATGGTCCCTCCATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTCATAGATGCTCAAATAAGATTAGGTGAATGGTCCCTCCATCA  750

seq1  GGACTTAGTTATTCCATGGGTCTAGGATGATCGAGACCTGTTAGAGAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTAGTTATTCCATGGGTCTAGGATGATCGAGACCTGTTAGAGAAAC  800

seq1  CAGCGGAGAAAGGGAAGCGAGACCAAGCAAAGACTTCAAGGTCTGTTTAA  850
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  CAGCGGAGAAAGGGAAGCGAGACC-AGC-AAGACTTCAAGGTCTGTTTAA  848

seq1  TGGAGGCTAAGAACCTGGTTATAAGAAGAAAGAGAAAAAATAGGAAGGTG  900
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  TGGAGGCTAAGAACCTGGTTATAAGAAGAA--AGAAAAAATAGGAAGGTG  896

seq1  TCAAGGGGGGATAATAAAATACAGAGAAAGGGATGGACATCTGGGGCAGA  950
      || ||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  TCTAGGGGGGATAATAAAATTCAGAGAAAGGGATGGAC-TCTGGGGCAGA  945

seq1  TGCTGATTGCAAAGCTTCTCTTGGAATGTCGGCCCTAAAACAGTTCCGGG  1000
      |||||| ||||||||||||||||||| ||| |||   |||||||| | ||
seq2  TGCTGA-TGCAAAGCTTCTCTTGGAAAGTCCGCCTCTAAACAGTTTCCGG  994

seq1  CAGCCTTCAAACATTCTGCATTTTATCTTGGAGTGTCAGCCCTAACTAAA  1050
      |||||||| ||||||||||| |||||||||||  |  |  | ||||| ||
seq2  CAGCCTTC-AACATTCTGCA-TTTATCTTGGATAGCTACGCTTAACTTAA  1042

seq1  CAGTCCCAGGCAGCCATCAAACATCTTTTAGCTTATCTTGG  1091
      |||| ||| ||||||||||| | ||||||||||| ||||||
seq2  CAGTTCCA-GCAGCCATCAATC-TCTTTTAGCTTTTCTTGG  1081