BAC Information

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BAC

Clone NameB6Ng01-336J09
Chromosome13 (Build37)
Map Location 71,303,727 - 71,479,931
singlet/doubletdoublet
Overlap genenone
Upstream gene4930520P13Rik, EG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
Downstream geneLOC627230, LOC100042360, Irx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336J09.bB6Ng01-336J09.g
ACCGA121465GA121466
length1,0981,129
definitionB6Ng01-336J09.b B6Ng01-336J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,478,821 - 71,479,931)(71,303,727 - 71,304,865)
sequence
gaattctacctggttctttcagtttatctctttttcagtgtatagcatca
cctcacactgttattcactatgaacttccttgtagttttgaagtaagatg
gtggtctgaacatgcaccttaccctctcctctttccagtaacctaataca
gtgtgcccctcccaacatacacagtacttcattacccccccccaaaaaag
accaaacaacatcatactcgcctttcccacctgtgaatgacacttgatga
cccttagtctagcttgttttacatactctttctagattgggtaatgcagg
ccgtcttagaagtgttgttttgggtgatggatgaatatttgaatcattct
gcttcataaacaaagtctttgagacattcatctaaataaattctgatcaa
ttaatatgcaagaatggttctacaaatgacaaaaaaaaacccacccatca
ccctactcaaacttgagtatgtagtcatatcttgcatacttcctgatgat
gttaagatagttcatcctgtgggcttccatcccttaggtacatcttggtg
atatctagaaagatgattcatatgttttgcaagccagcaaagttgaacct
gaaaccattaaatgttctgtctttagtacctattagacatggctcatcaa
gattctatcctagaatatcagttctggcaatttggaaaagttccctagtg
gccccagaatggcctacgtaggtgtggtggtttaaataggtatgggcccc
ctaaacttttgtgtttgaatgcttggcccatagtgagtagcactgttagg
aagtgtggccttgttggaggaaatgtgtcacaaataatagactaaacctc
tgaaagtgtaagccagctccaattactgtgggggtgagctttgagatctc
ttatgctcaagctctgtccactgtggaatggtcttctgctgctgctttca
aatcagatgttagaactctcagttccttcttcatcgcatgcacactactg
tgtttgccaccatgatgatatggactaaacttctgactgtagcagcccta
ctaatgtttcttttaagagttgccctacatgcatgggcttttcacagc

gaattccagtaagtgtcaggcaaggtgagaatctccggtccaaagtgtga
actactatattctcaggctaactttaccttctggttctttctgcgctctg
taggggccccacgcaggatcaagtgggaacacctggagtggagacactgc
tgaagtctgaaggcctgcgcgaaagactttgatcttcatgaaggcaccat
catggtctcttcttcccccacccccaacccccaacccccaacccctgttt
tgatagaatataagtctcgcagatttcattttggaaaaaaaaataatcat
cacgggttagggatcaccgcatgactttggaaagcatcatcgcatttgtt
ggtgagtggccacttccaccactgcggagacagcaacggcatcctgaatt
agctgccatttatggtccatccccaagggaatgtttacaaattaaacctg
tacacagagaggtgtaatgacagctaatccgggagtgtttatgaacagag
agacagccaagggttaacccagtttccatcccagccacttttgcttgcct
ttattattattattttttttcttctctcccttttaactgattcatagcat
aaaatcttcctggacacctaattacccagccagctcccagtcacagctgt
ctgcgtggagaacccattagaggcagcagttgaagcctccgtaattcccc
aaacttcccgggtgtgaatattaagaaaagatttttacatgtcatatgca
attcgaaggcggtgtgaatggcctccgagatgaggggccctgaatgcctg
tccgtcattccattcactggttacaggtggcctcattttccacttccaga
tatcggctggctatgacagcaggcactttgatttgcatgttcgacagaca
acaaacggccccgtgcatgtcaaattaggtggtgatgcgtgacagctcct
acacaatactgtctcctcttcgcatgacctctgaccttcttttgcatgtc
tttttttccacatcagaaaaaagtagaataaaaaagaaagaaagaaaccc
acacttctttctttggaataatttgatacctaattgatcttttctttctt
cctcttccttctctctccattcccctccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_71478821_71479931
seq2: B6Ng01-336J09.b_44_1141 (reverse)

seq1  GCTGTGAAAAGACACCATGCATGGCCAGGGCAACTCTTAAAAAGGAAAAC  50
      |||||||||||   |||||||||   ||||||||||||||||    ||||
seq2  GCTGTGAAAAG--CCCATGCATG--TAGGGCAACTCTTAAAA---GAAAC  43

seq1  ATTTAGTTGGGGCTGGCTTACAGTTCAGAGGTTTAGTCCATTATCATCAT  100
      | |||| | ||||||   ||||| ||||| |||||||||| |||||||||
seq2  A-TTAG-TAGGGCTG--CTACAG-TCAGAAGTTTAGTCCA-TATCATCAT  87

seq1  GGTGGCAAACACAGTAGTGTGCATGGCGATGAAGAAGGAACTGAGAGTTC  150
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGTGGCAAACACAGTAGTGTGCAT-GCGATGAAGAAGGAACTGAGAGTTC  136

seq1  T-ACATCTTGATTTGAAGGCAGCAGCAGAAGACCATTCCACAGTGGACAG  199
      | ||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  TAACATC-TGATTTGAAAGCAGCAGCAGAAGACCATTCCACAGTGGACAG  185

seq1  AGCTTGAGCATAAGAGATCTCAAAGCTCACCCCCACAGTAATTGGAGCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGAGCATAAGAGATCTCAAAGCTCACCCCCACAGTAATTGGAGCTG  235

seq1  GCTTACACTTTCAGAGGTTTAGTCTATTA-TTGTGACACATTTCCTCCAA  298
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTTACACTTTCAGAGGTTTAGTCTATTATTTGTGACACATTTCCTCCAA  285

seq1  CAAGGCCACACTTCCTAACAGTGCTACTCACTATGGGCCAAGCATTCAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCACACTTCCTAACAGTGCTACTCACTATGGGCCAAGCATTCAAA  335

seq1  CACAAAAGTTTAGGGGGCCCATACCTATTTAAACCACCACACCTACGTAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGTTTAGGGGGCCCATACCTATTTAAACCACCACACCTACGTAG  385

seq1  GCCATTCTGGGGCCACTAGGGAACTTTTCCAAATTGCCAGAACTGATATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCTGGGGCCACTAGGGAACTTTTCCAAATTGCCAGAACTGATATT  435

seq1  CTAGGATAGAATCTTGATGAGCCATGTCTAATAGGTACTAAAGACAGAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATAGAATCTTGATGAGCCATGTCTAATAGGTACTAAAGACAGAAC  485

seq1  ATTTAATGGTTTCAGGTTCAACTTTGCTGGCTTGCAAAACATATGAATCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATGGTTTCAGGTTCAACTTTGCTGGCTTGCAAAACATATGAATCA  535

seq1  TCTTTCTAGATATCACCAAGATGTACCTAAGGGATGGAAGCCCACAGGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTAGATATCACCAAGATGTACCTAAGGGATGGAAGCCCACAGGAT  585

seq1  GAACTATCTTAACATCATCAGGAAGTATGCAAGATATGACTACATACTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATCTTAACATCATCAGGAAGTATGCAAGATATGACTACATACTCA  635

seq1  AGTTTGAGTAGGGTGATGGGTGGGTTTTTTTTTGTCATTTGTAGAACCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAGTAGGGTGATGGGTGGGTTTTTTTTTGTCATTTGTAGAACCAT  685

seq1  TCTTGCATATTAATTGATCAGAATTTATTTAGATGAATGTCTCAAAGACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCATATTAATTGATCAGAATTTATTTAGATGAATGTCTCAAAGACT  735

seq1  TTGTTTATGAAGCAGAATGATTCAAATATTCATCCATCACCCAAAACAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATGAAGCAGAATGATTCAAATATTCATCCATCACCCAAAACAAC  785

seq1  ACTTCTAAGACGGCCTGCATTACCCAATCTAGAAAGAGTATGTAAAACAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAAGACGGCCTGCATTACCCAATCTAGAAAGAGTATGTAAAACAA  835

seq1  GCTAGACTAAGGGTCATCAAGTGTCATTCACAGGTGGGAAAGGCGAGTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACTAAGGGTCATCAAGTGTCATTCACAGGTGGGAAAGGCGAGTAT  885

seq1  GATGTTGTTTGGTCTTTTTTGGGGGGGGGTAATGAAGTACTGTGTATGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGTTTGGTCTTTTTTGGGGGGGGGTAATGAAGTACTGTGTATGTT  935

seq1  GGGAGGGGCACACTGTATTAGGTTACTGGAAAGAGGAGAGGGTAAGGTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGCACACTGTATTAGGTTACTGGAAAGAGGAGAGGGTAAGGTGC  985

seq1  ATGTTCAGACCACCATCTTACTTCAAAACTACAAGGAAGTTCATAGTGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAGACCACCATCTTACTTCAAAACTACAAGGAAGTTCATAGTGAA  1035

seq1  TAACAGTGTGAGGTGATGCTATACACTGAAAAAGAGATAAACTGAAAGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGTGAGGTGATGCTATACACTGAAAAAGAGATAAACTGAAAGAA  1085

seq1  CCAGGTAGAATTC  1111
      |||||||||||||
seq2  CCAGGTAGAATTC  1098


seq1: chr13_71303727_71304865
seq2: B6Ng01-336J09.g_64_1192

seq1  GAATTCCAGTAAGTGTCAGGCAAGGTGAGAATCTCCGGTCCAAAGTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTAAGTGTCAGGCAAGGTGAGAATCTCCGGTCCAAAGTGTGA  50

seq1  ACTACTATATTCTCAGGCTAACTTTACCTTCTGGTTCTTTCTGCGCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTATATTCTCAGGCTAACTTTACCTTCTGGTTCTTTCTGCGCTCTG  100

seq1  TAGGGGCCCCACGCAGGATCAAGTGGGAACACCTGGAGTGGAGACACTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGCCCCACGCAGGATCAAGTGGGAACACCTGGAGTGGAGACACTGC  150

seq1  TGAAGTCTGAAGGCCTGCGCGAAAGACTTTGATCTTCATGAAGGCACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTGAAGGCCTGCGCGAAAGACTTTGATCTTCATGAAGGCACCAT  200

seq1  CATGGTCTCTTCTTCCCCCACCCCCAACCCCCAACCCCCAACCCCTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCTCTTCTTCCCCCACCCCCAACCCCCAACCCCCAACCCCTGTTT  250

seq1  TGATAGAATATAAGTCTCGCAGATTTCATTTTGGAAAAAAAAATAATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAATATAAGTCTCGCAGATTTCATTTTGGAAAAAAAAATAATCAT  300

seq1  CACGGGTTAGGGATCACCGCATGACTTTGGAAAGCATCATCGCATTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGTTAGGGATCACCGCATGACTTTGGAAAGCATCATCGCATTTGTT  350

seq1  GGTGAGTGGCCACTTCCACCACTGCGGAGACAGCAACGGCATCCTGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTGGCCACTTCCACCACTGCGGAGACAGCAACGGCATCCTGAATT  400

seq1  AGCTGCCATTTATGGTCCATCCCCAAGGGAATGTTTACAAATTAAACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCATTTATGGTCCATCCCCAAGGGAATGTTTACAAATTAAACCTG  450

seq1  TACACAGAGAGGTGTAATGACAGCTAATCCGGGAGTGTTTATGAACAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAGGTGTAATGACAGCTAATCCGGGAGTGTTTATGAACAGAG  500

seq1  AGACAGCCAAGGGTTAACCCAGTTTCCATCCCAGCCACTTTTGCTTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCCAAGGGTTAACCCAGTTTCCATCCCAGCCACTTTTGCTTGCCT  550

seq1  TTATTATTATTATTTTTTTTCTTCTCTCCCTTTTAACTGATTCATAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATTATTTTTTTTCTTCTCTCCCTTTTAACTGATTCATAGCAT  600

seq1  AAAATCTTCCTGGACACCTAATTACCCAGCCAGCTCCCAGTCACAGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTCCTGGACACCTAATTACCCAGCCAGCTCCCAGTCACAGCTGT  650

seq1  CTGCGTGGAGAACCCATTAGAGGCAGCAGTTGAAGCCTCCGTAATTCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTGGAGAACCCATTAGAGGCAGCAGTTGAAGCCTCCGTAATTCCCC  700

seq1  AAACTTCCCGGGTGTGAATATTAAGAAAAGATTTTTACATGTCATATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCCCGGGTGTGAATATTAAGAAAAGATTTTTACATGTCATATGCA  750

seq1  ATTCGAAGGCGGTGTGAATGGCCTCCGAGATGAGGGGCCCTGAATGCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGAAGGCGGTGTGAATGGCCTCCGAGATGAGGGGCCCTGAATGCCTG  800

seq1  TCCGTCATTCCATTCACTGGTTACAGGTGGCCTCATTTTCCACTTCCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCATTCCATTCACTGGTTACAGGTGGCCTCATTTTCCACTTCCAGA  850

seq1  TATCGGCTGGCTATGACAGCAGGCAC-TTGATTTGCATGTTCGACAGACA  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATCGGCTGGCTATGACAGCAGGCACTTTGATTTGCATGTTCGACAGACA  900

seq1  ACAAACGGCCCCGTGCATGTCAAAATAGGTGGTGATGCGTGACAGCTCCT  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACAAACGGCCCCGTGCATGTCAAATTAGGTGGTGATGCGTGACAGCTCCT  950

seq1  ACACAATACTGTCTCCTCTTCGCATGACCTCTGACCT--CTCTGCATGTC  997
      |||||||||||||||||||||||||||||||||||||   | ||||||||
seq2  ACACAATACTGTCTCCTCTTCGCATGACCTCTGACCTTCTTTTGCATGTC  1000

seq1  TTTTTTCCACCATCAGAAAAAAAAAGAAGAAAAAAAAAAGAAAGAAAAGA  1047
      |||||| |  ||||||||||||  |||| |||||| ||||||||      
seq2  TTTTTTTCCACATCAGAAAAAAGTAGAATAAAAAAGAAAGAAAG------  1044

seq1  AAACCCACACTTCTTTCTTTGGAATAAATTTGATACTAAAATGGTTCTTT  1097
      ||||||||||||||||||||||||| ||||||||||   ||| | |||||
seq2  AAACCCACACTTCTTTCTTTGGAAT-AATTTGATAC-CTAATTGATCTTT  1092

seq1  TCCTTTCTTCCTCTTCTCTTCTTCCTCTCCCCTTCCCCTCCG  1139
      | |||||||||||||| |||||  |||| || ||||||||||
seq2  T-CTTTCTTCCTCTTC-CTTCT--CTCT-CCATTCCCCTCCG  1129


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