BAC Information

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BAC

Clone NameB6Ng01-336M16
Chromosome13 (Build37)
Map Location 66,096,406 - 66,097,606
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855
Downstream geneEG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336M16.bB6Ng01-336M16.g
ACCGA121609GA121610
length1,196449
definitionB6Ng01-336M16.b B6Ng01-336M16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgcaacacttgaggctccacactggagtttattatgaatatc
aggaacttgtgaaagcatttaagtagtgttcaagtcttagaaactaagaa
gcatttatgctcgagaaactctgaaaatgtgacaatgaagggaaaatttc
aaattgttcactgtcaaatatttcataatgaagaaagtagcaaagcccga
aaaatgtgtaactttttcttggagactgaaagaatccattgcagaagaaa
tctgattatgatggataatacacccctcaaaagagagagtgacaccaata
gcattctgtatgtttaattcaaatgaagaaactcagccaaatcatgtttt
ttaaaagagagtttgataaattaaaccaccaaaatggaatgctcttcctg
ccagtatcctacagatacacagattgccctgagtgtcaagtattcataat
ctgtatcatatgctggtttcaagtgtcaggataggaactgtctttgagtc
ccttggcatctggtaaccaactccttcctcatagtcctggatgtaactgc
aataaatttcattggttgaacaagttgtaatgggttgttttcattttcaa
cttgggcaggtagatgaatatgcgtgttgcatctctgtagaaaacggctc
tcatacaacaagctgaacccattactgatttctccatacttgtaacataa
aattaatactagaccaatatttttcaacctgtccatagtaacttgtttgg
aggtattctgaatgactaactggttacataagaccataggaaaacatgta
tttcttaggagtgacactttcctttgtctctaggtgagtccacctacatt
aggatactttgaattttatgagtgctgtagcattaggactgtgagaccca
ctatacatgaatgcacttgtgttaactaaaagaaagggagactgtgttca
atgctcctgccttactgccatagtctgagggatagggctgcttctacctt
gaatccaagaagagtgagagaaagtctaccagacaaagaactatgggttt
caaggtgtcagtgacagacaaaatccactggactgtgtcattatggtgct
cttactccaataataatactagttgatcaacctcagttcaggtacttcga
accattgtacccatagcaattatttacgaaccattgtgtgggtagc
tttgttgagctctgtaccccattcttaagttgggttatttgattttctgg
agtccagctacttgagttctttgtatatattggatattagtcccctgtct
gatttagaattggtaaagatcctttcccaatctgttggtggcttttttgt
cttattgacagtgtcctttgcattacagaagctttgcaattttatgaggt
cccatttgtcaattctcaatcttacagcacaagctgaaagacccccgaag
ggagaccctcactcaagcctcgggatgtggcgcggacccaaagagagacg
cggagaccgaaatggcgtgcacacaaagctatttaataaagcggggaggg
ggggggggaagccttcactctggggccgatacccgtacacctttgcacat
ggtagaggagtctccatgacgacttaatttttcactagctattaaaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66096406_66097606
seq2: B6Ng01-336M16.b_46_1241

seq1  GAATTCTTTGCAACACTTGAGGCTCCACACTGGAGTTTATTATGAATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCAACACTTGAGGCTCCACACTGGAGTTTATTATGAATATC  50

seq1  AGGAACTTGTGAAAGCATTTATGTAGTGTTCAAGTCTTAGAAACTAAGAA  100
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGAACTTGTGAAAGCATTTAAGTAGTGTTCAAGTCTTAGAAACTAAGAA  100

seq1  GCATTTATGCTCGAGAAACTCTGAAAATGTGACAATGAAGGGAAAATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATGCTCGAGAAACTCTGAAAATGTGACAATGAAGGGAAAATTTC  150

seq1  AAATTGTTCACTGTCAAATATTTCATAATGAAGAAAGTAGCAAAGCCCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTCACTGTCAAATATTTCATAATGAAGAAAGTAGCAAAGCCCGA  200

seq1  AAAATGTGTAACTTTTTCTTGGAGACTGAAAGAATCCATTGCAGAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGTAACTTTTTCTTGGAGACTGAAAGAATCCATTGCAGAAGAAA  250

seq1  TCTGATTATGATGGATAATACACCCCTCAAAAGAGAGAGTGACACCAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTATGATGGATAATACACCCCTCAAAAGAGAGAGTGACACCAATA  300

seq1  GCATTCTGTATGTTTAATTCAAATGAAGAAACTCAGCCAAATCATGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTGTATGTTTAATTCAAATGAAGAAACTCAGCCAAATCATGTTTT  350

seq1  TTAAAAGAGAGTTTGATAAATTAAACCACCAAAATGGAATGCTCTTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAGAGTTTGATAAATTAAACCACCAAAATGGAATGCTCTTCCTG  400

seq1  CCAGTATCCTACAGATACACAGACTGCCCTGAGTGTCAAGTATTCATAAT  450
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCAGTATCCTACAGATACACAGATTGCCCTGAGTGTCAAGTATTCATAAT  450

seq1  CTGTAGCATATGCTGGTTTCAAGTGTCAGGATAGGAACTGTCTTTGAGTC  500
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCATATGCTGGTTTCAAGTGTCAGGATAGGAACTGTCTTTGAGTC  500

seq1  CCTTGGCATCTGGTAACCAACTCCTTCCTCATAGTCCTGGATGTAACTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCATCTGGTAACCAACTCCTTCCTCATAGTCCTGGATGTAACTGC  550

seq1  AATAAATTTCATTGGTTGAACAAGTTGTAATGGGTTGTTTTCAGTTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATAAATTTCATTGGTTGAACAAGTTGTAATGGGTTGTTTTCATTTTCAA  600

seq1  CTTGGGACAGGTAGATGAATATGCGTGTTGCATCTCTGTAGAAAACGGCT  650
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGG-CAGGTAGATGAATATGCGTGTTGCATCTCTGTAGAAAACGGCT  649

seq1  CTCATACAACAAGCTGAACCCATTACTGATTTCTCCATACTTGTAACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACAACAAGCTGAACCCATTACTGATTTCTCCATACTTGTAACATA  699

seq1  AAATTAATACTAGACCAATATTTTTCAACCTGTCCATAGTAACTTGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATACTAGACCAATATTTTTCAACCTGTCCATAGTAACTTGTTTG  749

seq1  GAGGTATTCTGAATGACTAACTGGTTACATAAGACCATAGGAAAACATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATTCTGAATGACTAACTGGTTACATAAGACCATAGGAAAACATGT  799

seq1  ATTTCTTAGGAGTGACACATTCCTTTGTCTCTAGGTGAGTCCACCTACAT  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTTCTTAGGAGTGACACTTTCCTTTGTCTCTAGGTGAGTCCACCTACAT  849

seq1  TAGTATACTTTGAATTTTATGAGTGCTGTAGCATTAGGACTGTGAGACCC  900
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATACTTTGAATTTTATGAGTGCTGTAGCATTAGGACTGTGAGACCC  899

seq1  ACTATACATGAATGCACTTGTGTTAACTAAAA-TAAGGGAGACTGTGTTC  949
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  ACTATACATGAATGCACTTGTGTTAACTAAAAGAAAGGGAGACTGTGTTC  949

seq1  AATGCTCCTGCCTTACTGCCATAGTCTGAGGGATAAGGCTGCTTTCTACC  999
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  AATGCTCCTGCCTTACTGCCATAGTCTGAGGGATAGGGCTGC-TTCTACC  998

seq1  TTGAATTCCAAGAAGAGTGAGAGAAAGTTCTACCAAGAACAAATGAAACT  1049
      ||||| ||||||||||||||||||||| |||||||   |||||   ||||
seq2  TTGAA-TCCAAGAAGAGTGAGAGAAAG-TCTACCA--GACAAA--GAACT  1042

seq1  AT-GGCTTCAAGGTTGTCAGTGACAGACAAAATCCACTGGACTGTGTCAT  1098
      || || ||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTTCAAGG-TGTCAGTGACAGACAAAATCCACTGGACTGTGTCAT  1091

seq1  TATGTGGCTCTTAACTC--AT-ATAATACCAAGTGATTCAACTCAAGTTC  1145
      ||||  |||||| ||||  || ||||||| |  ||| |||||   |||||
seq2  TATGGTGCTCTT-ACTCCAATAATAATACTAGTTGA-TCAACCTCAGTTC  1139

seq1  AGTAACCCTCAGAACAATGGTACCCATAGGCATATATTACAGACCATTGT  1195
      ||  |  ||  |||| || ||||||||||  ||   ||||  ||||||||
seq2  AGGTA--CTTCGAACCATTGTACCCATAGCAATTATTTACGAACCATTGT  1187

seq1  ---GGTAGC  1201
         ||||||
seq2  GTGGGTAGC  1196