BAC Information

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BAC

Clone NameB6Ng01-336N24
Chromosome13 (Build37)
Map Location 70,558,504 - 70,559,686
singlet/doubletsinglet
Overlap genenone
Upstream genePols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291, 4930520P13Rik
Downstream geneEG633042, BC018507, EG620473, Adamts16, 8030423J24Rik, LOC627230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336N24.bB6Ng01-336N24.g
ACCGA121668GA121669
length1,1851,023
definitionB6Ng01-336N24.b B6Ng01-336N24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctccactacagggtaccaacatggctccaactcaaagccagagc
aagcagccaccaagacaaaataggcttcttatacttaaccttctattttt
cttctgatgaccactaagattcattgtgtggatgtgatgtaaagtgctta
aaaccaagatttattatataggcacaatgctaaatgttttaaactatgac
tgcgtaggcatgagggtgagtgctttaaacattccatgtatcttcaaaat
catgtcttttagtttggaatagttttagattattcaaaagctagaaagtg
cagtgttgggtgtgtgccccatacccagctgtccaaatggttggattcat
atatcaccaaggcacctctgtctaaattgaacagtcatacatacaagttt
gttgattaaacttcatattgtatatgcatggccagtctttgcattactgt
taaattctgtgtatacccattacctaaacctcctcttgtctctcagattt
ttcttagcctttccttgcgtcttgtgatctgaaaatcttgaaggtacagg
ctacgtgcattgtggagtgtcctggtgtttatcatgaagagtttgaggtg
agttcccagaaagggcttggccaggggaaatttcccttgtcctcacactt
ccctgaaggcagctgatgtcttcatggcattgttgaccctctttatcctc
catactccatcaataggtgtgaggaaggcgtcccctcattagtattgcta
ttttttcctctgtctttgggaatttatcagtcatttcctttagtcttagg
tagaaatagagcttttccttggcctcaaacctgccaacctgaagcccttc
ttcctacttctattctggtttctatgaagatccaaaactttcctaaccag
ctacccattcatttcccttttcccccagcaagtttggtgtagctactggt
ggggtcaccacagggtggttcttctgcatctactgtggagcaaaactgaa
caagacgtgtatgtgatgctgggttcatctagatcagacttaatatggag
aaggacatctccatgtacagtagagttaccttaccttcacaggcccatct
caaaatccttacctgcttgcatacatacacaagaaatgctcaaatccact
gaatacaaggtagcttagccttggtaccctcatgg

gaattctgttggtgctgcttgcatctctttcctacattttccatctccag
gtttgcctcagtttgtgttttctcttcttgcttctatttccattttcagg
tcttgaatagtgtcattcatttccttcacctgcgttattgtactttgctg
tatttctttgaaggatttattaattttctctttaaaggtatctataatca
ttataaggttagatttgaggtcattttcttgtgcttgggttgtgttagga
tatcctggggttgctgtagtgagatagctgtgctctctgaaggtgccatg
ttgctctgatccttgttgtttgttgtttaagcggccctttagccatctgg
cagttcttagaagcttctggagtagtaggtactgggaagccaagcctaat
ctggatgttcccagtgcagcaggcctccagtgggcaactttggatgttct
tggtggagtggacctggtagtttttattttccaggtctaatggggtagcc
agacaaatgaagctgcgagtgggaagtcaggcaacctgcagctagatcag
ggcagctgagactgcccagggggacaggcaatggaactgggtgggggaag
ggatctaacttggatatccttgttcagcaggcctgatagaggccagcaga
gctgtggccagacaatggtgctccaggcatgtttctcctattttcaggta
ttcttgtctgtttgttcatggaacactgcttttaattcgagtacttgcat
gagtatgggttagggggttatttgctaagtagggacaacttacaggtagc
cacatggcagaggaatgagtccctctctttcttaacaactaaaaactgcc
tatagttcctccagggagtcttgatgggctttatacttctcccattatga
gcattccttccccccttctgacttctgaaaatgcagaacccttttatcac
tggtgtggtgttatggatcctgtaaggatattgactaggaaatcggtgta
tcctctgcaccaagtctgtttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_70558504_70559686
seq2: B6Ng01-336N24.b_46_1230

seq1  GAATTCCTCCACTACAGGGTACCAACATGGCTCCAACTCAAAGCCAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCACTACAGGGTACCAACATGGCTCCAACTCAAAGCCAGAGC  50

seq1  AAGCAGCCACCAAGACAAAATAGGCTTCTTATACTTAACCTTCTATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCCACCAAGACAAAATAGGCTTCTTATACTTAACCTTCTATTTTT  100

seq1  CTTCTGATGACCACTAAGATTCATTGTGTGGATGTGATGTAAAGTGCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGATGACCACTAAGATTCATTGTGTGGATGTGATGTAAAGTGCTTA  150

seq1  AAACCAAGATTTATTATATAGGCACAATGCTAAATGTTTTAAACTATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGATTTATTATATAGGCACAATGCTAAATGTTTTAAACTATGAC  200

seq1  TGCGTAGGCATGAGGGTGAGTGCTTTAAACATTCCATGTATCTTCAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTAGGCATGAGGGTGAGTGCTTTAAACATTCCATGTATCTTCAAAAT  250

seq1  CATGTCTTTTAGTTTGGAATAGTTTTAGATTATTCAAAAGCTAGAAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTTTTAGTTTGGAATAGTTTTAGATTATTCAAAAGCTAGAAAGTG  300

seq1  CAGTGTTGGGTGTGTGCCCCATACCCAGCTGTCCAAATGGTTGGATTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTGGGTGTGTGCCCCATACCCAGCTGTCCAAATGGTTGGATTCAT  350

seq1  ATATCACCAAGGCACCTCTGTCTAAATTGAACAGTCATACATACAAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACCAAGGCACCTCTGTCTAAATTGAACAGTCATACATACAAGTTT  400

seq1  GTTGATTAAACTTCATATTGTATATGCATGGCCAGTCTTTGCATTACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTAAACTTCATATTGTATATGCATGGCCAGTCTTTGCATTACTGT  450

seq1  TAAATTCTGTGTATACCCATTACCTAAACCTCCTCTTGTCTCTCAGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTGTGTATACCCATTACCTAAACCTCCTCTTGTCTCTCAGATTT  500

seq1  TTCTTAGCCTTTCCTTGCGTCTTGTGATCTGAAAATCTTGAAGGTACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGCCTTTCCTTGCGTCTTGTGATCTGAAAATCTTGAAGGTACAGG  550

seq1  CTACGTGCATTGTGGAGTGTCCTGGTGTTTATCATGAAGAGTTTGAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGTGCATTGTGGAGTGTCCTGGTGTTTATCATGAAGAGTTTGAGGTG  600

seq1  AGTTCCCAGAAAGGGCTTGGCCAGGGGAAATTTCCCTTGTCCTCACACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCAGAAAGGGCTTGGCCAGGGGAAATTTCCCTTGTCCTCACACTT  650

seq1  CCCTGAAGGCAGCTGATGTCTTCATGGCATTGTTGACCCTCTTTATCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAGGCAGCTGATGTCTTCATGGCATTGTTGACCCTCTTTATCCTC  700

seq1  CATACTCCATCAATAGGTGTGAGGAAGGCGTCCCCTCATTAGTATTGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCCATCAATAGGTGTGAGGAAGGCGTCCCCTCATTAGTATTGCTA  750

seq1  TTTTTTCCTCTGTCTTTGGGAATTTATCAGTCATTTCCTTTAGTCTTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCTCTGTCTTTGGGAATTTATCAGTCATTTCCTTTAGTCTTAGG  800

seq1  TAGAAATAGAGCTTTTCCTTGGCCTCAAACCTGCCAACCTGAAGCCCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATAGAGCTTTTCCTTGGCCTCAAACCTGCCAACCTGAAGCCCTTC  850

seq1  TTCCTACTTCTATTCTGGTTTCTATGAAGATCCAAAACTTTCCTAACCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACTTCTATTCTGGTTTCTATGAAGATCCAAAACTTTCCTAACCAG  900

seq1  CTACCCATTCATTTCCC-TTTCCCCCAGCAAGTTTGGTGTAGCTACT-GT  948
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  CTACCCATTCATTTCCCTTTTCCCCCAGCAAGTTTGGTGTAGCTACTGGT  950

seq1  GGGGTCACCACAGGGTGGTTCTTCTGCATCTACTGTTGGAGCAAAACTGA  998
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGGGTCACCACAGGGTGGTTCTTCTGCATCTACTG-TGGAGCAAAACTGA  999

seq1  ACAAGAACGTGTATGTGATGCTGGGTTCATCTAGATCCAGAC-TAATATG  1047
      ||||| |||||||||||||||||||||||||||||| ||||| |||||||
seq2  ACAAG-ACGTGTATGTGATGCTGGGTTCATCTAGAT-CAGACTTAATATG  1047

seq1  GAGAAGGACATCTCCATGAACAGGTAGAGTTACC-TAACTCCACAGGCCA  1096
      |||||||||||||||||| ||| ||||||||||| || || |||||||| 
seq2  GAGAAGGACATCTCCATGTACA-GTAGAGTTACCTTACCTTCACAGGCCC  1096

seq1  ATCCTCAAAAACCCCTACTTGC-TGCATACATACACCAGAGAATGCTCAA  1145
      || ||| |||| || ||| ||| ||||||||||||| ||| |||||||||
seq2  AT-CTC-AAAATCCTTACCTGCTTGCATACATACACAAGA-AATGCTCAA  1143

seq1  ATCCACTG-ATACAA-GTAGC-TAGCCTTGGTA-CCTCATGG  1183
      |||||||| |||||| ||||| ||||||||||| ||||||||
seq2  ATCCACTGAATACAAGGTAGCTTAGCCTTGGTACCCTCATGG  1185


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