BAC Information

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BAC

Clone NameB6Ng01-338M06
Chromosome13 (Build37)
Map Location 26,179,696 - 26,180,826
singlet/doubletsinglet
Overlap genenone
Upstream geneDcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338M06.bB6Ng01-338M06.g
ACCGA122956GA122957
length1,1191,184
definitionB6Ng01-338M06.b B6Ng01-338M06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctacatatgcgtttcaatagacacttagaaatatcactgttatat
gaagggcctgataagcattcggctcacacctgaacttcctctaagcgaga
tttagaagatacactagaagactgatcacacaggcttttgaccacattca
agtttactaaagattgagttccagcattctttagctcttctttcctttaa
tccttttgtttctttctaatggaacacttttctttaaagccaagacacat
gcctgttcttctggactgacagcatctgagatctaagcaatatttactgt
ctacaccattcacatttatggaattatcaatactgtgagttttctttttt
ataagaaaggccttagtttgtttatatctgctcaccatttacccaagggc
ataaggattattttctttgagaggcagtacactgatcaataatttttatg
attgtcttgtgaaaaaaatcaccagcattttcctcataataacagtttct
cagctttataaaccctccatccaatataatattgttagactttaggctgc
ccagttattaatcagtgcagcatgcagatgactgttcatacttaaagggc
atttatttttttcttcacttaaaatactctacagaaattaaaagccctgc
atgctagcaaatagccaaaaaagtgttttatgaaacatgatcctaagacc
ccaaagaaaatgtcaggaaagactgtagattagagaacaaaaaaatacac
aacaaattgaaaattaaatatattttgcatattcgatacactatttttct
tgcctcatttgcatgcaaatagggttcaataactgctttaatgtctatat
tcttcccaaaagcaaagaagactcaaaatatatgtgttattttgtatatg
ataaaatgttaatattcgccaaataactacctaatttccatagtgattag
acatgtctgcaataagccctttttataaatatacagaaggaacaccagag
gcagcgaaatttgacagtgaaatatagcaatctaatagaaaattgtatgc
agtgaagttttctagtacattatttttaatatgactttattactaatgca
gagtataagtcagtcctta

gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggccgcagatgtagctgtctcttgggagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
tgagagctagagaaagtagccaagagctaaagggatctgcaccctatagg
tgacacatatgagctacagtacccgagctctgactctagctgcatatatt
atcaaagatgcctagtagccatcactgaaagaagtcaatggactgccaac
ctttaatgcccagtaaggcaatacaggctaagatgctgacagggatgggg
gtgccactagcgacgacgtgatgatcgatgtcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26179696_26180826
seq2: B6Ng01-338M06.b_45_1163 (reverse)

seq1  TAAGGACTTGACTTATTACTCTGGCATTAGTAATAAAGTCATATTAAAAA  50
      ||||||| ||||||| |||||| |||||||||||||||||||||||||||
seq2  TAAGGAC-TGACTTA-TACTCT-GCATTAGTAATAAAGTCATATTAAAAA  47

seq1  TAATGTACTAGAAAACTTTCACCTGCATACAATTTTCCTTATTAGATTTG  100
      |||||||||||||||| |||| |||||||||||||||  ||||||| |||
seq2  TAATGTACTAGAAAAC-TTCA-CTGCATACAATTTTC--TATTAGA-TTG  92

seq1  CTTATTATTTCACTTGTCAAATTTCGCTGCCTCTGGTGTTCCTTCTGTAT  150
      ||   |||||||| ||||||||||||||||||||||||||||||||||||
seq2  CT--ATATTTCAC-TGTCAAATTTCGCTGCCTCTGGTGTTCCTTCTGTAT  139

seq1  ATTTATAAAAGGGGCTTTATTGCAGACATGTCTAATCACTATGGAAATTA  200
      |||||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  ATTTATAAAAAGGGC-TTATTGCAGACATGTCTAATCACTATGGAAATTA  188

seq1  GGTAGTTATTTGGCGAATATTAACATTTTATCATATACAAAATAACACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTATTTGGCGAATATTAACATTTTATCATATACAAAATAACACAT  238

seq1  ATATTTTGAGTCTTCTTTGCTTTTGGGAAGAATATAGACATTAAAGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGAGTCTTCTTTGCTTTTGGGAAGAATATAGACATTAAAGCAGT  288

seq1  TATTGAACCCTATTTGCATGCAAATGAGGCAAGAAAAATAGTGTATCGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAACCCTATTTGCATGCAAATGAGGCAAGAAAAATAGTGTATCGAA  338

seq1  TATGCAAAATATATTTAATTTTCAATTTGTTGTGTATTTTTTTGTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAAATATATTTAATTTTCAATTTGTTGTGTATTTTTTTGTTCTCT  388

seq1  AATCTACAGTCTTTCCTGACATTTTCTTTGGGGTCTTAGGATCATGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACAGTCTTTCCTGACATTTTCTTTGGGGTCTTAGGATCATGTTTC  438

seq1  ATAAAACACTTTTTTGGCTATTTGCTAGCATGCAGGGCTTTTAATTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACACTTTTTTGGCTATTTGCTAGCATGCAGGGCTTTTAATTTCTG  488

seq1  TAGAGTATTTTAAGTGAAGAAAAAAATAAATGCCCTTTAAGTATGAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTATTTTAAGTGAAGAAAAAAATAAATGCCCTTTAAGTATGAACAG  538

seq1  TCATCTGCATGCTGCACTGATTAATAACTGGGCAGCCTAAAGTCTAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGCATGCTGCACTGATTAATAACTGGGCAGCCTAAAGTCTAACAA  588

seq1  TATTATATTGGATGGAGGGTTTATAAAGCTGAGAAACTGTTATTATGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATTGGATGGAGGGTTTATAAAGCTGAGAAACTGTTATTATGAGG  638

seq1  AAAATGCTGGTGATTTTTTTCACAAGACAATCATAAAAATTATTGATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTGGTGATTTTTTTCACAAGACAATCATAAAAATTATTGATCAG  688

seq1  TGTACTGCCTCTCAAAGAAAATAATCCTTATGCCCTTGGGTAAATGGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGCCTCTCAAAGAAAATAATCCTTATGCCCTTGGGTAAATGGTGA  738

seq1  GCAGATATAAACAAACTAAGGCCTTTCTTATAAAAAAGAAAACTCACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATATAAACAAACTAAGGCCTTTCTTATAAAAAAGAAAACTCACAGT  788

seq1  ATTGATAATTCCATAAATGTGAATGGTGTAGACAGTAAATATTGCTTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATAATTCCATAAATGTGAATGGTGTAGACAGTAAATATTGCTTAGA  838

seq1  TCTCAGATGCTGTCAGTCCAGAAGAACAGGCATGTGTCTTGGCTTTAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGATGCTGTCAGTCCAGAAGAACAGGCATGTGTCTTGGCTTTAAAG  888

seq1  AAAAGTGTTCCATTAGAAAGAAACAAAAGGATTAAAGGAAAGAAGAGCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTTCCATTAGAAAGAAACAAAAGGATTAAAGGAAAGAAGAGCTA  938

seq1  AAGAATGCTGGAACTCAATCTTTAGTAAACTTGAATGTGGTCAAAAGCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCTGGAACTCAATCTTTAGTAAACTTGAATGTGGTCAAAAGCCT  988

seq1  GTGTGATCAGTCTTCTAGTGTATCTTCTAAATCTCGCTTAGAGGAAGTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATCAGTCTTCTAGTGTATCTTCTAAATCTCGCTTAGAGGAAGTTC  1038

seq1  AGGTGTGAGCCGAATGCTTATCAGGCCCTTCATATAACAGTGATATTTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGAGCCGAATGCTTATCAGGCCCTTCATATAACAGTGATATTTCT  1088

seq1  AAGTGTCTATTGAAACGCATATGTAGAATTC  1131
      |||||||||||||||||||||||||||||||
seq2  AAGTGTCTATTGAAACGCATATGTAGAATTC  1119


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