BAC Information

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BAC

Clone NameB6Ng01-339G12
Chromosome13 (Build37)
Map Location 57,637,530 - 57,765,301
singlet/doubletdoublet
Overlap geneSpock1
Upstream geneFbxl21, Lect2, Tgfbi, Smad5, EG627415, Trpc7, LOC100040995
Downstream geneKlhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1, LOC100041086, Slc28a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339G12.bB6Ng01-339G12.g
ACCGA123410GA123411
length8271,129
definitionB6Ng01-339G12.b B6Ng01-339G12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,764,580 - 57,765,301)(57,637,530 - 57,638,652)
sequence
gaattcctttccttacccacaagttcatctgggaggatactggcagaggg
tatcccacttcaacacacactcagaaatgccctctcatcaccatgggcca
cagtctccctccttcctaacccagtgataccaggtggcctgatctggaga
aagcctctgcttgaaaagtcaaacttcttgtagatggtgagattgtctgt
gaagaagattccaggtcaaactatctgataataaaaggacaggaatcctc
ttgggccaataaataaactcaacaatgtcacaggatagaagatcaacaca
ggaaatcagctgtgtgactccaaactaacaagggacatgtgaaaagcaaa
attaacaaagaaaacagaatgtttaggtacgtgcttaagaaatgtcaagt
ctatatactaaatatcataaaagacaaatgaaagaaatagcctaagccaa
taaaagacgcacgccattcatacacacaccattcataggttgggaagctg
aacaaagataccagctctccctaagctgatttacagaagtcccagcaaag
cataagtcaggatgttgagtaacttatctggaaagactcagattctagac
tagacaagatgatagcatccagcaggaggcagggctgtagggctgcatat
ggatggatacacagcaatgcaagtgtatccagcacagggatcagtaggaa
catgtggcaacccaacagatccccatagataagcttgactgattttgata
aagttgtagcagaggacctgtgtcgcttatattttagaacagcaggaaag
aaggaaggagggagggaggaaggaaaa
gaattcctggaggtgctaggtttcctctatctctcgctgatgcctggcac
ctgtttatatcaagacttctggcatcagaaaggttctgactgaagtaagg
gggagcctcaagctctaaattattttctaggtaaagctttgtgttctagg
caaatgaaaggtagggtttggaggagtacagtttccagcctgtaggagaa
gaggacagacatttctgccactgggaggatttaaaaacccatggtcaggc
tggagagataaatcagaggttaagagcactgactgctcttccagaggtcc
tgagttcaattcccagcaaccacatggtggctcacaaccatctacaacag
gttccaatgccctcttctggtgtgtctgaagatagctacagaatattcat
atagataaaataaataaatcttaaaacaataaaaccagcacaaatgaaag
caatgctttctctaagcaaacatataaatcccaccccagacaggctgcca
gtttaaggctccatttcaatggaagagggttgagtttgcctccagagcaa
acaaaccatggactatgagatggcaatttcaagttgatccttttgtcaat
gaaattgctgtgcaatttctaaacttcctacagagatgtaattagccagc
agacacaactctgaggcccagagcatctctctttaatgtctgagtgagga
agaacagcaccttgggctgtgcctgtggccatttcctggcctctcttcct
ctgtggatcataccatgtctagcacacaagtacagactgctcaggagcac
ttgaccttttcttgtagcgatgctcggtatcctgccaacagaagcaaagt
ggaagctaagccggagcctcctcatccggcacaggcaccgaatctgagcc
ctttcctcgggcactcaagtagagattggcaaggcaggctttctgctggc
agcagcagcagatagccagaagcccagtcaagtccagttgctgtgtagaa
gtttcaacatggaagcatgagaacactcttcaatgttccaccagttcccc
aagctgagggttgaaaggtcaatgcacatagtgaaataggcagattcctt
ttgaagcaatgtctttgattcctttgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_57764580_57765301
seq2: B6Ng01-339G12.b_154_875 (reverse)

seq1  TTTCCTTCCTCCCTCCCTCCTTCCTTCTTTCCTGCTGTTCTAAAATATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCCTCCCTCCCTCCTTCCTTCTTTCCTGCTGTTCTAAAATATAA  50

seq1  GCGACACAGGTCCTCTGCTACAACTTTATCAAAATCAGTCAAGCTTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACACAGGTCCTCTGCTACAACTTTATCAAAATCAGTCAAGCTTATCT  100

seq1  ATGGGGATCTGTTGGGTTGCCACATGTTCCTACTGATCCCTGTGCTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGATCTGTTGGGTTGCCACATGTTCCTACTGATCCCTGTGCTGGAT  150

seq1  ACACTTGCATTGCTGTGTATCCATCCATATGCAGCCCTACAGCCCTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGCATTGCTGTGTATCCATCCATATGCAGCCCTACAGCCCTGCCT  200

seq1  CCTGCTGGATGCTATCATCTTGTCTAGTCTAGAATCTGAGTCTTTCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGATGCTATCATCTTGTCTAGTCTAGAATCTGAGTCTTTCCAGA  250

seq1  TAAGTTACTCAACATCCTGACTTATGCTTTGCTGGGACTTCTGTAAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTACTCAACATCCTGACTTATGCTTTGCTGGGACTTCTGTAAATCA  300

seq1  GCTTAGGGAGAGCTGGTATCTTTGTTCAGCTTCCCAACCTATGAATGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGGGAGAGCTGGTATCTTTGTTCAGCTTCCCAACCTATGAATGGTG  350

seq1  TGTGTATGAATGGCGTGCGTCTTTTATTGGCTTAGGCTATTTCTTTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGAATGGCGTGCGTCTTTTATTGGCTTAGGCTATTTCTTTCATT  400

seq1  TGTCTTTTATGATATTTAGTATATAGACTTGACATTTCTTAAGCACGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTATGATATTTAGTATATAGACTTGACATTTCTTAAGCACGTAC  450

seq1  CTAAACATTCTGTTTTCTTTGTTAATTTTGCTTTTCACATGTCCCTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACATTCTGTTTTCTTTGTTAATTTTGCTTTTCACATGTCCCTTGTT  500

seq1  AGTTTGGAGTCACACAGCTGATTTCCTGTGTTGATCTTCTATCCTGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGAGTCACACAGCTGATTTCCTGTGTTGATCTTCTATCCTGTGAC  550

seq1  ATTGTTGAGTTTATTTATTGGCCCAAGAGGATTCCTGTCCTTTTATTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGAGTTTATTTATTGGCCCAAGAGGATTCCTGTCCTTTTATTATC  600

seq1  AGATAGTTTGACCTGGAATCTTCTTCACAGACAATCTCACCATCTACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTTTGACCTGGAATCTTCTTCACAGACAATCTCACCATCTACAAG  650

seq1  AAGTTTGACTTTTCAAGCAGAGGCTTTCTCCAGATCAGGCCACCTGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGACTTTTCAAGCAGAGGCTTTCTCCAGATCAGGCCACCTGGTAT  700

seq1  CACTGGGTTAGGAAGGAGGGAG  722
      ||||||||||||||||||||||
seq2  CACTGGGTTAGGAAGGAGGGAG  722

seq1: chr13_57637530_57638652
seq2: B6Ng01-339G12.g_64_1192

seq1  GAATTCCTGGAGGTGCTAGGTTTCCTCTATCTCTCGCTGATGCCTGGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAGGTGCTAGGTTTCCTCTATCTCTCGCTGATGCCTGGCAC  50

seq1  CTGTTTATATCAAGACTTCTGGCATCAGAAAGGTTCTGACTGAAGTAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTATATCAAGACTTCTGGCATCAGAAAGGTTCTGACTGAAGTAAGG  100

seq1  GGGAGCCTCAAGCTCTAAATTATTTTCTAGGTAAAGCTTTGTGTTCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCTCAAGCTCTAAATTATTTTCTAGGTAAAGCTTTGTGTTCTAGG  150

seq1  CAAATGAAAGGTAGGGTTTGGAGGAGTACAGTTTCCAGCCTGTAGGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAAAGGTAGGGTTTGGAGGAGTACAGTTTCCAGCCTGTAGGAGAA  200

seq1  GAGGACAGACATTTCTGCCACTGGGAGGATTTAAAAACCCATGGTCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGACATTTCTGCCACTGGGAGGATTTAAAAACCCATGGTCAGGC  250

seq1  TGGAGAGATAAATCAGAGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGATAAATCAGAGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCC  300

seq1  TGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTACAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTACAACAG  350

seq1  GTTCCAATGCCCTCTTCTGGTGTGTCTGAAGATAGCTACAGAATATTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAATGCCCTCTTCTGGTGTGTCTGAAGATAGCTACAGAATATTCAT  400

seq1  ATAGATAAAATAAATAAATCTTAAAACAATAAAACCAGCACAAATGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAAAATAAATAAATCTTAAAACAATAAAACCAGCACAAATGAAAG  450

seq1  CAATGCTTTCTCTAAGCAAACATATAAATCCCACCCCAGACAGGCTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTTTCTCTAAGCAAACATATAAATCCCACCCCAGACAGGCTGCCA  500

seq1  GTTTAAGGCTCCATTTCAATGGAAGAGGGTTGAGTTTGCCTCCAGAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGGCTCCATTTCAATGGAAGAGGGTTGAGTTTGCCTCCAGAGCAA  550

seq1  ACAAACCATGGACTATGAGATGGCAATTTCAAGTTGATCCTTTTGTCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCATGGACTATGAGATGGCAATTTCAAGTTGATCCTTTTGTCAAT  600

seq1  GAAATTGCTGTGCAATTTCTAAACTTCCTACAGAGATGTAATTAGCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGCTGTGCAATTTCTAAACTTCCTACAGAGATGTAATTAGCCAGC  650

seq1  AGACACAACTCTGAGGCCCAGAGCATCTCTCTTTAATGTCTGAGTGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAACTCTGAGGCCCAGAGCATCTCTCTTTAATGTCTGAGTGAGGA  700

seq1  AGAACAGCACCTTGGGCTGTGCCTGTGGCCATTTCCTGGCCTCTCTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCACCTTGGGCTGTGCCTGTGGCCATTTCCTGGCCTCTCTTCCT  750

seq1  CTGTGGATCATACCATGTCTAGCACACAAGTACAGACTGCTCAGGAGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGATCATACCATGTCTAGCACACAAGTACAGACTGCTCAGGAGCAC  800

seq1  TTGACCTTTTCTTGTAGCGATGCTCGGTATCCTGCCAACAGAAGCAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTTTTCTTGTAGCGATGCTCGGTATCCTGCCAACAGAAGCAAAGT  850

seq1  GGAAGCTAAGCCGGAGCC-CCTCATCCGGCACAGGCACCGAATCTGAGCC  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGAAGCTAAGCCGGAGCCTCCTCATCCGGCACAGGCACCGAATCTGAGCC  900

seq1  C-TTCCTCGGGCACTCAAGTAGAGATTGGC-AGGCAGGCTTTCTGCTGGC  947
      | |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTTTCCTCGGGCACTCAAGTAGAGATTGGCAAGGCAGGCTTTCTGCTGGC  950

seq1  AGCAGCAGCAGATAG-CAGAAG-CCAGTCAAGTCCAGTTGCTGTGTAG-A  994
      ||||||||||||||| |||||| ||||||||||||||||||||||||| |
seq2  AGCAGCAGCAGATAGCCAGAAGCCCAGTCAAGTCCAGTTGCTGTGTAGAA  1000

seq1  GTTTCAACATGAAAGCATGAGACACCTCTCAAATGTTCCA-CAG-TCCCC  1042
      ||||||||||| ||||||||||   ||||  ||||||||| ||| |||||
seq2  GTTTCAACATGGAAGCATGAGAACACTCTTCAATGTTCCACCAGTTCCCC  1050

seq1  AGGCTGAGGGTGGAAAGGGGCCATGGCACATAGTG-AATAGGCAGATTTC  1091
      | ||||||||| ||||  || ||  |||||||||| |||||||||||| |
seq2  AAGCTGAGGGTTGAAA--GGTCAATGCACATAGTGAAATAGGCAGATTCC  1098

seq1  TTTTAAAGGAAAATGTCTTTG-TTCCCTTGGGC  1123
      |||| |||   |||||||||| |||| ||||||
seq2  TTTTGAAG--CAATGTCTTTGATTCCTTTGGGC  1129