BAC Information

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BAC

Clone NameB6Ng01-339I05
Chromosome13 (Build37)13 (Build37)
Map Location 66,723,031 - 66,724,11466,483,771 - 66,484,734
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik
Downstream geneMzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339I05.bB6Ng01-339I05.g
ACCGA123492GA123493
length1,1661,060
definitionB6Ng01-339I05.b B6Ng01-339I05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,723,031 - 66,724,114)(66,483,771 - 66,484,734)
sequence
gaattctctgatgaattataagatcatatttgtgagtgaagcatttgtca
cattcactacattgataagggttttcccctgtatgaattctctgatgaac
attaagattatatttttgggtaaagcatttgtcacattcactacatttgt
aaggtttttctcctgtataaactctgatgaatacttttgggtaaagcttt
ttttcacattcactacatttgtaaggtttctttcctgtatgaattatttg
atgactactaacattacatttttgggtaaagcatttgttacattcactac
atttgtaaggcttctttcctgtatgaattatctgatgacttctaggactg
tgtttgtcagtacagcatttgtcacactcactacatttataaggtttctc
tccagtatgaattctctgatgaatactaagactgtatttgtgcaaaaagc
atttgtcacattcactatatatgtaaggtttctctcctgtatggattctc
tgatgtctaagcttgcatttcttggtgaaacatctggcacgttcactaca
tctgtaaggtttctttccactattggtttgtttcagcctgagtatttgct
tagagttaaaaaccttatcaagcactataccattgtgttctttctttcct
atgtggattccttgatgtagaccagtgatagaacacaaatttaaacagtt
tatacagtttttatgtttgcaaggtcctctggtgtttccattttcatgtc
tgtttatgtttgatgactcaacacgtgtattcctgaagttagcttggtaa
aatacactttgggtgtattcataaatgattttgccatgctttgacctttg
taagacttctcctggatattcacatgctgggatgtgctggaacttttagt
cattatgcattcatttgtctttaaagaggctttactggatatgaatatct
tttaaatcatcttcatgtttatgtccatatgaaaattcaaatatgtattt
tatcatatttaaagaatagatatgtttattccttaatataagtggaggga
acaatgtcccactattgaaaaacatccttccttggacctagtgtggttaa
cctctttaaaggtaaattcagctgggcggtgtgtgccatactccttaatt
cccgagcacttgggag
gaattccagttaaaaccagagacactgaaacttatagtggagaaaatagg
gaaaagcctcaaagataagggcacaggggaaaaattcctgaatagaacag
caatggctttgaagaatggaaaattactggcctattgtaagaacatgaac
ttttcacctcggagcccaacccctcccatctgaaaaacatacttgagaaa
aacattttctgggacaaccacagaatgtttcaacaggccaggtgtattgc
caaacatagggcatgactctttggttgagtaaacttgtggttgttaaact
tcccctattccctccccattccccctcccagtttgtggtttttgccttta
aaagcttgtgaaaaatttgagtcgtcatcgagactcctctaccctgtgca
aaggtgtacgggtctcggccccagcgtgctggctcccccccccccccccc
gctttattaaatagctttgtgtgcacgccatttcggtctccgcgtctctc
ttgggtccgcgccacatcccgaggcttgagtgagggtctcccttcggatg
tcttacatttgggggctcgtcccgggattgacgcgaccacccaagagacc
gagaccatcccatcgggtaagttctgtcgcttggtaattttgtttgttta
cgtttgtttttgtgagtcttctatgttgtctgttatctaagtgtctaagt
gtggcaccgctgaatttctgtctttgtttttcagttctgagattgtgggt
ttgagtcccacctgtgttaccagttctggtattctgtattctggcagctg
ccactgtgggccgtaaggaccctagtggctgtgggaggacgaaggtctat
ggccccacaggctgcacccctggaagacgtttccaggggagaccctggag
agagtgcccagggtatggaacagtcagaggacctgctgtgccctggcaga
gtaaaggagagagggtgtctctctgccagagccgggagtgacgtgcattc
ccacctccattcaggagggagtcgatgtgcatccgaccccgtcaaggaaa
taggcgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66723031_66724114
seq2: B6Ng01-339I05.b_115_1212

seq1  GGGTTTTCCCCTGTATGAATTCTCTGATGAACATTAAGATTATATTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTCCCCTGTATGAATTCTCTGATGAACATTAAGATTATATTTTTG  50

seq1  GGTAAAGCATTTGTCACATTCACTACATTTGTAAGGTTTTTCTCCTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGCATTTGTCACATTCACTACATTTGTAAGGTTTTTCTCCTGTAT  100

seq1  AAACTCTGATGAATACTTTTGGGTAAAGCTTTTTTTCACATTCACTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGATGAATACTTTTGGGTAAAGCTTTTTTTCACATTCACTACAT  150

seq1  TTGTAAGGTTTCTTTCCTGTATGAATTATTTGATGACTACTAACATTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGGTTTCTTTCCTGTATGAATTATTTGATGACTACTAACATTACA  200

seq1  TTTTTGGGTAAAGCATTTGTTACATTCACTACATTTGTAAGGCTTCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGGTAAAGCATTTGTTACATTCACTACATTTGTAAGGCTTCTTTC  250

seq1  CTGTATGAATTATCTGATGACTTCTAGGACTGTGTTTGTCAGTACAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGAATTATCTGATGACTTCTAGGACTGTGTTTGTCAGTACAGCAT  300

seq1  TTGTCACACTCACTACATTTATAAGGTTTCTCTCCAGTATGAATTCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACACTCACTACATTTATAAGGTTTCTCTCCAGTATGAATTCTCTG  350

seq1  ATGAATACTAAGACTGTATTTGTGCAAAAAGCATTTGTCACATTCACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATACTAAGACTGTATTTGTGCAAAAAGCATTTGTCACATTCACTAT  400

seq1  ATATGTAAGGTTTCTCTCCTGTATGGATTCTCTGATGTCTAAGCTTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAGGTTTCTCTCCTGTATGGATTCTCTGATGTCTAAGCTTGCAT  450

seq1  TTCTTGGTGAAACATCTGGCACGTTCACTACATCTGTAAGGTTTCTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTGAAACATCTGGCACGTTCACTACATCTGTAAGGTTTCTTTCC  500

seq1  ACTATTGGTTTGTTTCAGCCTGAGTATTTGCTTAGAGTTAAAAACCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGGTTTGTTTCAGCCTGAGTATTTGCTTAGAGTTAAAAACCTTAT  550

seq1  CAAGCACTATACCATTGTGTTCTTTCTTTCCTATGTGGATTCCTTGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTATACCATTGTGTTCTTTCTTTCCTATGTGGATTCCTTGATGT  600

seq1  AGACCAGTGATAGAACACAAATTTAAACAGTTTATACAGTTTTTATGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGTGATAGAACACAAATTTAAACAGTTTATACAGTTTTTATGTTT  650

seq1  GCAAGGTCCTCTGGTGTTTCCATTTTCATGTCTGTTTATGTTTGATGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTCCTCTGGTGTTTCCATTTTCATGTCTGTTTATGTTTGATGACT  700

seq1  CAACACGTGTATTCCTGAAGTTAGCTTGGTAAAATACACTTTGGGTGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACGTGTATTCCTGAAGTTAGCTTGGTAAAATACACTTTGGGTGTAT  750

seq1  TCATAAATGATTTTGCCATGCTTTGACCTTTGTAAGACTTCTCCTGGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATGATTTTGCCATGCTTTGACCTTTGTAAGACTTCTCCTGGATA  800

seq1  TTCACATGCTGGGATGTGCTGGAACTTTTAGTCATTATGCATTCATTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGCTGGGATGTGCTGGAACTTTTAGTCATTATGCATTCATTTGT  850

seq1  CTTTAAAGAGGCTTTACTGGATATGAATATCTTTTAAATCATCTTCATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGAGGCTTTACTGGATATGAATATCTTTTAAATCATCTTCATGT  900

seq1  TTATGTCCATATGAAAATTCAAATATGTA-TTTATCATATTTAAAAGAAT  949
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  TTATGTCCATATGAAAATTCAAATATGTATTTTATCATATTT-AAAGAAT  949

seq1  AGATATG-TTATTC--TTATATAAGT-GAGG--ACAATGT-CCACTA-TG  991
      ||||||| ||||||  | |||||||| ||||  ||||||| |||||| ||
seq2  AGATATGTTTATTCCTTAATATAAGTGGAGGGAACAATGTCCCACTATTG  999

seq1  AATAACATC--TCCT--GGTCTAGTTGTGG-TAAACTCTTTAAAAGT-AA  1035
      || ||||||  ||||  |  |||| ||||| ||| ||||||||| || ||
seq2  AAAAACATCCTTCCTTGGACCTAG-TGTGGTTAACCTCTTTAAAGGTAAA  1048

seq1  TTCAGGCCTGGCGGTG-GTGGCATACTCCTTTAATCCC-AGCACTTGGGA  1083
      |||| ||  ||||||| ||| |||||||||| | |||| |||||||||||
seq2  TTCA-GCTGGGCGGTGTGTGCCATACTCCTTAATTCCCGAGCACTTGGGA  1097

seq1  G  1084
      |
seq2  G  1098

seq1: chr13_66483771_66484734
seq2: B6Ng01-339I05.g_170_1130

seq1  GCAATGGCTTTGAAGAATGGAAAATTACTGGCCTATTGTAAGAACATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGCTTTGAAGAATGGAAAATTACTGGCCTATTGTAAGAACATGAA  50

seq1  CTTTTCACCTGGGAACCCAACCCCTCCCATCTGGAAAACATACTTGAGAA  100
      |||||||||| ||| |||||||||||||||||| ||||||||||||||||
seq2  CTTTTCACCTCGGAGCCCAACCCCTCCCATCTGAAAAACATACTTGAGAA  100

seq1  AAACATTTTCTGGGACAACCACAGAATGTTTCAACAGGCCAGGTGTATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTCTGGGACAACCACAGAATGTTTCAACAGGCCAGGTGTATTG  150

seq1  CCAAACATAGGGCATGACTCTTTGGTTGAGTAAACTTGTGGTTGTTAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACATAGGGCATGACTCTTTGGTTGAGTAAACTTGTGGTTGTTAAAC  200

seq1  TTCCCCTATTCCCTCCCCATTTCCCCTCCCAGTTTGTGGTTTTTGCCTTT  250
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTCCCCTATTCCCTCCCCATTCCCCCTCCCAGTTTGTGGTTTTTGCCTTT  250

seq1  AAAAGCTTGTGAAAAATTTGAGTCGTCATCGAGACTCCTCTACCCTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTGTGAAAAATTTGAGTCGTCATCGAGACTCCTCTACCCTGTGC  300

seq1  AAAGGTGTACGGGTCTAGGCCCCAGCACGCTAGCTCCCCCCCTCCCCCCC  350
      |||||||||||||||| |||||||||  ||| ||||||||   |||||||
seq2  AAAGGTGTACGGGTCTCGGCCCCAGCGTGCTGGCTCCCCC---CCCCCCC  347

seq1  CCCCGCTTTATTAAATAGCTTTGTGTGCACGCCATTTTGGTCTCCGCATC  400
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  CCCCGCTTTATTAAATAGCTTTGTGTGCACGCCATTTCGGTCTCCGCGTC  397

seq1  TCTCTTGGGTCCGCACCACATCCCGAGGCTTGAGTGAGGGTCTCCCTTCG  450
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTCTTGGGTCCGCGCCACATCCCGAGGCTTGAGTGAGGGTCTCCCTTCG  447

seq1  GAGGTCTTACATTTGGGGGCTCGTCCCGGGATTGACGCCACCACCCAAGA  500
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GATGTCTTACATTTGGGGGCTCGTCCCGGGATTGACGCGACCACCCAAGA  497

seq1  GACCGAGACCATCCCATCGGGTAAGTTCTGTTGCTTGGTAATTTTGTTTG  550
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GACCGAGACCATCCCATCGGGTAAGTTCTGTCGCTTGGTAATTTTGTTTG  547

seq1  TTTACGTTTGTTTTTGTGAGTCTTCTATGTTGTCTGTCATCTAAGTGTCT  600
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTACGTTTGTTTTTGTGAGTCTTCTATGTTGTCTGTTATCTAAGTGTCT  597

seq1  AAGTGTGGCACCGCTGAATTTCTGTCTTTGTTTTTCAGTTCTGAGATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGCACCGCTGAATTTCTGTCTTTGTTTTTCAGTTCTGAGATTGT  647

seq1  GGGTTTGAGTCCCACCTGTGTTACCAGTTCTGGTATTCTGTATTCTGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGAGTCCCACCTGTGTTACCAGTTCTGGTATTCTGTATTCTGGCA  697

seq1  GCTGCCACTGTGGGCCATAAGGACCCTAGTGGCTGTGGGAGGACGAAGGT  750
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCTGCCACTGTGGGCCGTAAGGACCCTAGTGGCTGTGGGAGGACGAAGGT  747

seq1  CTATGGCCCCACAGGCTGCACCCCTGGAAGACG-CTCCAAGGGAGACCCT  799
      |||||||||||||||||||||||||||||||||  |||| ||||||||||
seq2  CTATGGCCCCACAGGCTGCACCCCTGGAAGACGTTTCCAGGGGAGACCCT  797

seq1  GGAGAGAGTGCCCAGGGTATGGAACAGTCAGGAGGACCTGGCTGTTGCCT  849
      |||||||||||||||||||||||||||||| |||||||| |||||  |||
seq2  GGAGAGAGTGCCCAGGGTATGGAACAGTCA-GAGGACCT-GCTGTGCCCT  845

seq1  GGCAGAGTAAAGGAGAGAGGGTGTTCTCTCTGCCAGAG-TGGGAGTGGAC  898
      ||||||||||||||||||||||| ||||||||||||||  |||||| |||
seq2  GGCAGAGTAAAGGAGAGAGGGTG-TCTCTCTGCCAGAGCCGGGAGT-GAC  893

seq1  GTGGAATCCCACC-CCA-TCAGGAAGGGAGTCGATGTGGAATCCGACCCT  946
      ||| | ||||||| ||| ||||| ||||||||||||| | ||||||||| 
seq2  GTGCATTCCCACCTCCATTCAGG-AGGGAGTCGATGT-GCATCCGACCCC  941

seq1  GTC-AGGAAATA-GCGTTTG  964
      ||| |||||||| |||||||
seq2  GTCAAGGAAATAGGCGTTTG  961