BAC Information

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BAC

Clone NameB6Ng01-339K24
Chromosome13 (Build37)
Map Location 115,828,103 - 115,829,225
singlet/doubletsinglet
Overlap geneItga1
Upstream geneArl15, A430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975
Downstream genePelo, LOC100041023, LOC547402, LOC100041045
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339K24.bB6Ng01-339K24.g
ACCGA123612GA123613
length9601,117
definitionB6Ng01-339K24.b B6Ng01-339K24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccatttttaaatggggttatttgatt
ttctggagcccatcttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgatggtgtcttttgccttacagaagttttgcagtttca
tgagtcccatttgtcaattctcaatcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtgcccatatcttccaggcttttccccaat
ttctcctctataagtttcagagtctctggttttatgtggagttccttgat
ccacttatatttgaccttagtacaaggagataggaatggatcaattcgca
ttcttctacatgaaaaccaccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagctccctggtcaaagatcaaatg
accataggtgtgtgggttcatttctgggtcttcaattctgttccattggt
ctacttgtctgtcgctataccagtaccatgcagtttttaccacaattgct
ctgtagtacagctttaggtcaggcatggtgattcaaccagagaacctcac
attctttaatgtattttaaatgcaattttttaaataaataaattataaat
aatctagaaaaagaaatgagaaatcagaatgaagcgatagtatgataaca
gaaagaataataaagaccaaggaacaacagtttgtcctcaaaaaagacaa
aatctgaaagagtgtagttaaaaatggatcatgcatataactgaatgtgc
ttctacaatggtgcatatgtatgtgtaaatgagtgtgaatgttcaagaat
ggacagtaataaaaatatttcttccctctcatagagaaaaaatatcaatt
aaattgttac

gaattccttaaacatatagtatgttgtatcagctaaacaatttctgatgt
agataaagaaaactaagaatatttcaatcttttagggtatagttcttatt
tctagaaagttgtcattaaaagtattctaaaataaggaagaaaagtttga
tacataaaagcaacgctaagggaaagttaagaaataaggatgacagcaag
agtaattggttattgaagggctattctgtaaactcttgtgttgcacacaa
accagaagttattgagtggacactccagaatgaaaatatatctgtggcct
aattccaagagaaccccagctagttaagtgaaacactggtctgatttaaa
ggagatgaaaccaaattattaaactcattatagtagcactgataacgtcc
accatttattgagtttataccatgtgccagacactagcctaagtgccttc
catatattaaataattaaattctctctttaaaagatagcatgagctaagc
tacagtgctaagcttttcgaattcaaagtgtggctttggtgtctactaga
tatctggtttaagattagtctgtttgtgtcttaggatttttttgttttgt
tttttcccacaaatcaaatgagagcacatactcatcacacatgatcatca
cagaagttagcacagttaagatgtgctaaaggtgtagaaaagcattgagg
tcatgtgatgggctaccttagtgttcgttctttctgttgacgatgtttct
ttacttcagattactaaacaaataaaaactgtgtgacacactgattgaaa
agagagtgtgtaaaaaccacgacacagtgcgtgaagagtaggtttttata
gtattttgttttatgcaatatatctgcatagatttatttttatggtttga
accagtctatagaaattatcactcttatcgaaactatttaacatgaggtt
agatgagtaaatgtgtattgaaaatcgggctggaagaagatgacttgtgg
ttattagcacttgcctgcccttctagaagctgagatcagtgctgagtgcc
cacatcttggtctctcaactgcagaaatacaggctctagaaatccataca
tctctgtctctggagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_115828103_115829225
seq2: B6Ng01-339K24.g_64_1180

seq1  GAATTCCTTAAACATATAGTATGTTGTATCAGCTAAACAATTTCTGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAACATATAGTATGTTGTATCAGCTAAACAATTTCTGATGT  50

seq1  AGATAAAGAAAACTAAGAATATTTCAATCTTTTAGGGTATAGTTCTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGAAAACTAAGAATATTTCAATCTTTTAGGGTATAGTTCTTATT  100

seq1  TCTAGAAAGTTGTCATTAAAAGTATTCTAAAATAAGGAAGAAAAGTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAAGTTGTCATTAAAAGTATTCTAAAATAAGGAAGAAAAGTTTGA  150

seq1  TACATAAAAGCAACGCTAAGGGAAAGTTAAGAAATAAGGATGACAGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAAAGCAACGCTAAGGGAAAGTTAAGAAATAAGGATGACAGCAAG  200

seq1  AGTAATTGGTTATTGAAGGGCTATTCTGTAAACTCTTGTGTTGCACACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTGGTTATTGAAGGGCTATTCTGTAAACTCTTGTGTTGCACACAA  250

seq1  ACCAGAAGTTATTGAGTGGACACTCCAGAATGAAAATATATCTGTGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAGTTATTGAGTGGACACTCCAGAATGAAAATATATCTGTGGCCT  300

seq1  AATTCCAAGAGAACCCCAGCTAGTTAAGTGAAACACTGGTCTGATTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAAGAGAACCCCAGCTAGTTAAGTGAAACACTGGTCTGATTTAAA  350

seq1  GGAGATGAAACCAAATTATTAAACTCATTATAGTAGCACTGATAACGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGAAACCAAATTATTAAACTCATTATAGTAGCACTGATAACGTCC  400

seq1  ACCATTTATTGAGTTTATACCATGTGCCAGACACTAGCCTAAGTGCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTATTGAGTTTATACCATGTGCCAGACACTAGCCTAAGTGCCTTC  450

seq1  CATATATTAAATAATTAAATTCTCTCTTTAAAAGATAGCATGAGCTAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTAAATAATTAAATTCTCTCTTTAAAAGATAGCATGAGCTAAGC  500

seq1  TACAGTGCTAAGCTTTTCGAATTCAAAGTGTGGCTTTGGTGTCTACTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGCTAAGCTTTTCGAATTCAAAGTGTGGCTTTGGTGTCTACTAGA  550

seq1  TATCTGGTTTAAGATTAGTCTGTTTGTGTCTTAGGATTTTTTTGTTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGTTTAAGATTAGTCTGTTTGTGTCTTAGGATTTTTTTGTTTTGT  600

seq1  TTTTTCCCACAAATCAAATGAGAGCACATACTCATCACACATGATCATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCACAAATCAAATGAGAGCACATACTCATCACACATGATCATCA  650

seq1  CAGAAGTTAGCACAGTTAAGATGTGCTAAAGGTGTAGAAAAGCATTGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTAGCACAGTTAAGATGTGCTAAAGGTGTAGAAAAGCATTGAGG  700

seq1  TCATGTGATGGGCTACCTTAGTGTTCGTTCTTTCTGTTGACGATGTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGATGGGCTACCTTAGTGTTCGTTCTTTCTGTTGACGATGTTTCT  750

seq1  TTACTTCAGATTACTAAACAAATAAAAACTGTGTGACACACTGATTGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCAGATTACTAAACAAATAAAAACTGTGTGACACACTGATTGAAA  800

seq1  AGAGAGTGTGTAAAAACCACGACACAGTGCGTGAAGAGTAGGTTTTTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTGTGTAAAAACCACGACACAGTGCGTGAAGAGTAGGTTTTTATA  850

seq1  GTATTTTGTTTTATGCAATATATCTGCATAGATTTATTTTTATGGTTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGTTTTATGCAATATATCTGCATAGATTTATTTTTATGGTTTGA  900

seq1  ACCAGTCTATAGAAATTATCACTCTTATCGAAACTATTTAACATGAGGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCTATAGAAATTATCACTCTTATCGAAACTATTTAACATGAGGTT  950

seq1  AGATGAGTTAATGTGTATTGAAAATCGGGCTGGA--GAGATGACTTGGTG  998
      |||||||| |||||||||||||||||||||||||   ||||||||| |||
seq2  AGATGAGTAAATGTGTATTGAAAATCGGGCTGGAAGAAGATGACTT-GTG  999

seq1  GTTAATAGCACTTG-CTGCCCTTCTAGAAGCCTTGAGATCAGTGCTGAGT  1047
      |||| ||||||||| ||||||||||||||||  |||||||||||||||||
seq2  GTTATTAGCACTTGCCTGCCCTTCTAGAAGC--TGAGATCAGTGCTGAGT  1047

seq1  GCCCACATCTTGTGTCTCTCAACTGCCAGAAATACAAGCTCTAAGAGATC  1097
      |||||||||||| |||||||||||| |||||||||| ||||| ||| || 
seq2  GCCCACATCTTG-GTCTCTCAACTG-CAGAAATACAGGCTCT-AGAAAT-  1093

seq1  CCATACCATCTCTGTCCTCTGTAGAC  1123
      ||||| ||||||||| ||||| ||||
seq2  CCATA-CATCTCTGT-CTCTGGAGAC  1117


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