BAC Information

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BAC

Clone NameB6Ng01-340F17
Chromosome13 (Build37)3 (Build37)
Map Location 22,783,449 - 22,784,43671,831,206 - 71,831,726
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOlfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740
Downstream geneLOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340F17.bB6Ng01-340F17.g
ACCGA124088GA124089
length910889
definitionB6Ng01-340F17.b B6Ng01-340F17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(22,783,449 - 22,784,436)(71,831,206 - 71,831,726)
sequence
gaattcctcagtgtgatgtggggaaggatttgggaattgagtggctaaat
aggaagaaatagactgagaaacagataaagaattttgggtaatggaaact
tggaattcagttcaactatagtgactgatagcaaagaaaatgtgtacatg
caggtagacagagagatggacagactcactctctttctctctctctctct
ctctctctctctctctctctctctctcacacacacacacacatacacaca
catacacacacacacacacacacacacacagagagagagagagagagaga
gaattgaacaagacaattttgctagtgtaaagctcaaaggtatttctttt
aaattttagattaaacaccagctcccaaactctcctctctgcacactcaa
aatatcctagagaccacaggaagaagggcaagtttcagagacctaaactg
caacattacctgtctctgtccctgctttgttgactccagaatatgctatt
gtgcaaatgtgctgtccagaccaagtctacaattgcagcacttcctccaa
agtgttgcatcctggacacatgtttctactagaagaagatgttgaagtat
ataatagtaataatctctctcttatgactgtgtcggtactctggaacatg
ttgttctgtgaattatacttcagttattggaagttctgagaagaccatat
accttattctgatccatctggcttacaacatcctaatacttctacaagat
tgccaaagactattagcttgatgagaattctagatgatatagctgtagat
cattgttactgagaggtgccgggctctcatctgcacagcagtctcactgt
gtcagctgtcatcatcagtcagagcatctgtgacagactcagcagagtct
gcatgacatc
gaattcctgatctttccaagactttcatcatgaatgggtgttggatcttg
tcgaatgctttttccgcatctaaagagatgatcatgtagttttggtcttt
gagtttgtttatataatggattacgttgatggatttccatacattaaacc
atccctgcatccttggaatgaaacctacttggtcaggatggatgactgct
ttaatgtgttcttggattcggttagcaagaattttattgagtatttttgc
attgatattcataagggaaatcggtgtggagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
gatagagtaccttctacttctattttgtggaatagtttgtgcagaactgg
aattaggtcttctttgaaggtctgatagaactctgcactaaacccatctg
gacctgggctttttttggttgggagactattaatgactgcatctatttct
ttaggggatacgagactgtttagatcgttaacttgaccctgatttaactt
tggtacctggtatctgtctagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggata
tcttcaggatctgttgttatgtctcccatttcatttctgattttgttaat
taggatgttgtccctgtgccctctagtgaatctggctaagtgtttatcta
tcttgttgattttctcaaacaaccagctcctcttttggttgattctttga
atagttcttgattccacttggttgattttgcccctgagttgtttattttc
tgctgtctactccactgggtgaatttgtttccttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_22783449_22784436
seq2: B6Ng01-340F17.b_47_956 (reverse)

seq1  GATGTGCCATGCAGACTCTGGCCTGAGTCTGTTCCACCCAGATGCTCTGG  50
      |||||  |||||||||||||  ||||||||||    | ||||||||||  
seq2  GATGT--CATGCAGACTCTG--CTGAGTCTGT----CACAGATGCTCT--  40

seq1  GACTGATGATGACAGCCTGGACAACAGTGAGGAAACTGCTGGTGCAGATG  100
      ||||||||||||||||   ||| ||||||||   |||||| |||||||| 
seq2  GACTGATGATGACAGC--TGAC-ACAGTGAG---ACTGCT-GTGCAGAT-  82

seq1  GAGAGGCCCCGGGCCACCCTCTCCAGGTAAACAATGATCTTACAGCCTAT  150
      |||||  |||||  || ||||| |||   |||||||||| ||||| ||||
seq2  GAGAG--CCCGG--CA-CCTCT-CAG--TAACAATGATC-TACAG-CTAT  122

seq1  ATCATCTAAGAAATTTCTCAATCCAAAAGCTAAAATAGTCTTTGGCAATC  200
      ||||||| ||||  ||||| |||   |||||  |||||||||||||||||
seq2  ATCATCT-AGAA--TTCTC-ATC---AAGCT--AATAGTCTTTGGCAATC  163

seq1  CTTTGGTAAGAAGTATTAGGATGTTTGTAAAAGCCAGATGGATCAGAATA  250
       | |    ||||||||||||||| ||||  ||||||||||||||||||||
seq2  TTGT----AGAAGTATTAGGATG-TTGT--AAGCCAGATGGATCAGAATA  206

seq1  AGGTATATGGGTTTCTTCTCAGAACTTCCCCAATAACTGAAAGTATAATT  300
      ||||||||||   ||||||||||||||  |||||||||| ||||||||||
seq2  AGGTATATGG---TCTTCTCAGAACTT--CCAATAACTG-AAGTATAATT  250

seq1  CACAGAAACAAACATGTTCCCCAGAGTACCGACCACAGTCATAAAGAGAG  350
      |||||||   ||||||||  |||||||||||| ||||||||| |||||||
seq2  CACAGAA--CAACATGTT--CCAGAGTACCGA-CACAGTCAT-AAGAGAG  294

seq1  AGATTTTATTTACCTTATTAATATACTTCAAAACCATTTCTTTCTTTCTA  400
      |||||    ||||  |||| ||||||||||| |     ||||   |||||
seq2  AGATT---ATTAC--TATT-ATATACTTCAACA-----TCTT--CTTCTA  331

seq1  GGTAGAAAAACATGTGTCCAGGATGCAAACACTTTTTGGAGGAAGTTGCT  450
       ||||  ||||||||||||||||||| |||||  ||||||||||| ||||
seq2  -GTAG--AAACATGTGTCCAGGATGC-AACAC--TTTGGAGGAAG-TGCT  374

seq1  GCAATTGTAGACTTGGGTCTGGACAGCACATTTTGCACAATAGCATATTC  500
      |||||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  GCAATTGTAGACTT-GGTCTGGACAGCACA-TTTGCACAATAGCATATTC  422

seq1  TGGAGTCAACAAAGCAGGGACAGAGACAGGTAATGTTGCAGTTTAGGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCAACAAAGCAGGGACAGAGACAGGTAATGTTGCAGTTTAGGTCT  472

seq1  CTGAAACTTGCCCTTCTTCCTGTGGTCTCTAGGATATTTTGAGTGTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTTGCCCTTCTTCCTGTGGTCTCTAGGATATTTTGAGTGTGCAG  522

seq1  AGAGGAGAGTTTGGGAGCTGGTGTTTAATCTAAAATTTAAAAGAAATACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAGTTTGGGAGCTGGTGTTTAATCTAAAATTTAAAAGAAATACC  572

seq1  TTTGAGCTTTACACTAGCAAAATTGTCTTGTTCAATTCTCTCTCTCTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCTTTACACTAGCAAAATTGTCTTGTTCAATTCTCTCTCTCTCTC  622

seq1  TCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTATGTG  672

seq1  TGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  722

seq1  AGAAAGAGAGTGAGTCTGTCCATCTCTCTGTCTACCTGCATGTACACATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAGTGAGTCTGTCCATCTCTCTGTCTACCTGCATGTACACATT  772

seq1  TTCTTTGCTATCAGTCACTATAGTTGAACTGAATTCCAAGTTTCCATTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCTATCAGTCACTATAGTTGAACTGAATTCCAAGTTTCCATTAC  822

seq1  CCAAAATTCTTTATCTGTTTCTCAGTCTATTTCTTCCTATTTAGCCACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATTCTTTATCTGTTTCTCAGTCTATTTCTTCCTATTTAGCCACTC  872

seq1  AATTCCCAAATCCTTCCCCACATCACACTGAGGAATTC  988
      ||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCAAATCCTTCCCCACATCACACTGAGGAATTC  910

seq1: chr3_71831206_71831726
seq2: B6Ng01-340F17.g_442_957 (reverse)

seq1  AAAAAAAGGAAACAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATC  50
      ||||||||||||||||||||||| || ||||||||| |||| |||||| |
seq2  AAAAAAAGGAAACAAATTCACCC-AGTGGAGTAGACAGCAGAAAATAAAC  49

seq1  AAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAG  100
       ||||||||||  ||||||||||||||||| |   |||||||||||||||
seq2  -AACTCAGGGGCAAAATCAACCAAGTGGAATC---AAGAACTATTCAAAG  95

seq1  AATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATA  150
      ||| ||||||| |||||| ||||| |||||||||||||||||||||||||
seq2  AATCAACCAAAAGAGGAGCTGGTTGTTTGAGAAAATCAACAAGATAGATA  145

seq1  AACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAAC  200
      ||| |||||| ||| |||||| ||||||||||||||| ||||||||||||
seq2  AACACTTAGCCAGATTCACTAGAGGGCACAGGGACAACATCCTAATTAAC  195

seq1  AAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCA  250
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  AAAATCAGAAATGAAATGGGAGACATAACAACAGATCCTGAAGATATCCA  245

seq1  AAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAA  295

seq1  ACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTG  350
      ||||||| ||||||||||||||||| ||||||||||||||||||||||| 
seq2  ACCTGGACGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAAGTTA  345

seq1  AATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAAT  400
      ||||||| ||||||| || |||||||||||| | |||| |||||||||||
seq2  AATCAGGGTCAAGTTAACGATCTAAACAGTCTCGTATCCCCTAAAGAAAT  395

seq1  AGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATG  450
      ||| ||||| |||||||||||||||||||||||||||||||| |||||||
seq2  AGATGCAGTCATTAATAGTCTCCCAACCAAAAAAAGCCCAGGTCCAGATG  445

seq1  GGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATT  500
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  GGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGACCTAATTCCAGTT  495

seq1  CTGCACAAACTATTTCACAAA  521
      |||||||||||||| ||||||
seq2  CTGCACAAACTATTCCACAAA  516