BAC Information

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BAC

Clone NameB6Ng01-340G01
Chromosome13 (Build37)
Map Location 14,762,421 - 14,763,575
singlet/doubletsinglet
Overlap genenone
Upstream geneLyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1, Mrpl32, Psma2, AW209491
Downstream geneEG665099, LOC670994, EG625121, Gli3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340G01.bB6Ng01-340G01.g
ACCGA124104GA124105
length1,1961,140
definitionB6Ng01-340G01.b B6Ng01-340G01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttaactagaacaatcaaacatagaaggagatcaaaatatctatt
tgcagatgttatgataataaatataagtgaccctaaaatttccaccagaa
tttctacaactgataaacactttcagcaaagtagctggatacaaaattaa
cttataaaagtctgtagtctttctaaatacaaatgacaaatagactgaaa
aagaaatcagggaaacatcatctttcacaaaggcctcaaataatataaaa
taccttggagtaccttttaccaagcattcaaaaaagttgtgtgataaaaa
cttcaattcacagaagaagatatcagaagatggaaaaatccctcatactt
atacaacattaacatcataaaaacgtacattctaccaaaagcagttgaca
gatccagtacaatatccctcaaaattccaacatctttacagaacatgaaa
ggatacttttcagccttatacaaaaaaagatacacacacagaaacaatta
tgaataataaaagaaccactggagatatggccagccctaatcccaaatta
ttctacagagctatagtaataaaaacagtatggtatttgcataaatgttg
atcaatggaatcaaatttaagactcagtcataatccacatacatatggac
acttgatttttttaaataaagaagccagaagtatacattggaagaaagac
agcatcttgaccaaatggtgctggtcaaactggatggctacatatagaaa
aatgcaaatggatccatacttattatactacacagaactaaactccaaat
gatcaaagacctcaacaacataatatatatactgaacttgatagaagaga
aagtggggaatagtcttaaactcattggcacaggaaaagattttctagac
ataacatcaagtaataaactgtatcttaaagaatgaaaaactctcacatg
tcaaaaaggtaaaataaaaaataaaaataaaaaccttcatttggctaaag
aaagccttaggatgggaattttttttttccattaacatccactagagagc
taaatcaaagtatacaaagactcaaaacaaacaacaactaagtatcagaa
ttaatgataaaattggaacggatcacagatcccaagagaatctcaatggt
ctgaaacctaaggaatgctcaggcctcattagcccactcaggttaa
gaattcattccaaataaacaatgtctatagggctgagaaattcttgagaa
aaaactcagtttgggttcctattcactctaagacatttagatgtaatatt
tgctgatatgctttggttatgaaatactttggttaaaagatgaaggaggt
aatttaagttaactgcagctattatatgtcctttttctggatctattttt
gaggattgtcttaatctatgtcacaagtgctgtcctctctggtcaaaggc
cacttgcttctttgtcctttggcttttcaaactgtcacccattgttccaa
gtgttaataaccaagaacacacatgtcctgatttcagctcttagcctggt
ttctgcattgcagtgcaattggttaatgctgttaagattcggatatgctg
cagccaccagagggagtattctgtctgaattggaattgcctttaaattca
ctgtacattcatgttttctccttgtaaaacgttaaaaaggacatgtcaga
cagcctgatctgtgcatttgattacatatagtgtcatgtctagaacatgc
ctatcatcctgcccaacaggatcttccaattcttccaaatctccctatgc
ctttgataggggaagtccatgcctctcttcatcattgatctcaagggagc
cttgtaaactctgcatcccattcctgccatcactgtaaaatcatggtatg
aggttgtacttcaacaaagtttcctttttgttccttcatttataaagtga
gataactaacaatgttgaagaagaaacaaagtctcagcaatataaattaa
ctcagtgctaaagttaaatccacaaccagagattagcatctaagtcttga
ggagggacatggacagggaaatgcttgatctaggtctccatccaaggggg
cagaaaacatttccaggataggtgggttctttcacacgaacaacatacaa
ccttaggattgctgtccattgttgtccatatgttggccgtctgcagcctt
gtttgtatgagctgaggacctcactttttaagtccaggaaataaacattg
tattctgtggcctctgcatgaacctcacatctttcaggaacagtcattta
ataagagaagcaatgaataagcattccatgatccattcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_14762421_14763575
seq2: B6Ng01-340G01.g_67_1206

seq1  GAATTCATTCCAAATAAACAATGTCTATAGGGCTGAGAAATTCTTGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCAAATAAACAATGTCTATAGGGCTGAGAAATTCTTGAGAA  50

seq1  AAAACTCAGTTTGGGTTCCTATTCACTCTAAGACATTTAGATGTAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCAGTTTGGGTTCCTATTCACTCTAAGACATTTAGATGTAATATT  100

seq1  TGCTGATATGCTTTGGTTATGAAATACTTTGGTTAAAAGATGAAGGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATATGCTTTGGTTATGAAATACTTTGGTTAAAAGATGAAGGAGGT  150

seq1  AATTTAAGTTAACTGCAGCTATTATATGTCCTTTTTCTGGATCTATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGTTAACTGCAGCTATTATATGTCCTTTTTCTGGATCTATTTTT  200

seq1  GAGGATTGTCTTAATCTATGTCACAAGTGCTGTCCTCTCTGGTCAAAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTGTCTTAATCTATGTCACAAGTGCTGTCCTCTCTGGTCAAAGGC  250

seq1  CACTTGCTTCTTTGTCCTTTGGCTTTTCAAACTGTCACCCATTGTTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCTTCTTTGTCCTTTGGCTTTTCAAACTGTCACCCATTGTTCCAA  300

seq1  GTGTTAATAACCAAGAACACACATGTCCTGATTTCAGCTCTTAGCCTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAATAACCAAGAACACACATGTCCTGATTTCAGCTCTTAGCCTGGT  350

seq1  TTCTGCATTGCAGTGCAATTGGTTAATGCTGTTAAGATTCGGATATGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATTGCAGTGCAATTGGTTAATGCTGTTAAGATTCGGATATGCTG  400

seq1  CAGCCACCAGAGGGAGTATTCTGTCTGAATTGGAATTGCCTTTAAATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACCAGAGGGAGTATTCTGTCTGAATTGGAATTGCCTTTAAATTCA  450

seq1  CTGTACATTCATGTTTTCTCCTTGTAAAACGTTAAAAAGGACATGTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACATTCATGTTTTCTCCTTGTAAAACGTTAAAAAGGACATGTCAGA  500

seq1  CAGCCTGATCTGTGCATTTGATTACATATAGTGTCATGTCTAGAACATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGATCTGTGCATTTGATTACATATAGTGTCATGTCTAGAACATGC  550

seq1  CTATCATCCTGCCCAACAGGATCTTCCAATTCTTCCAAATCTCCCTATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATCCTGCCCAACAGGATCTTCCAATTCTTCCAAATCTCCCTATGC  600

seq1  CTTTGATAGGGGAAGTCCATGCCTCTCTTCATCATTGATCTCAAGGGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATAGGGGAAGTCCATGCCTCTCTTCATCATTGATCTCAAGGGAGC  650

seq1  CTTGTAAACTCTGCATCCCATTCCTGCCATCACTGTAAAATCATGGTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAACTCTGCATCCCATTCCTGCCATCACTGTAAAATCATGGTATG  700

seq1  AGGTTGTACTTCAACAAAGTTTCCTTTTTGTTCCTTCATTTATAAAGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTACTTCAACAAAGTTTCCTTTTTGTTCCTTCATTTATAAAGTGA  750

seq1  GATAACTAACAATGTTGAAGAAGAAACAAAGTCTCAGCAATATAAATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTAACAATGTTGAAGAAGAAACAAAGTCTCAGCAATATAAATTAA  800

seq1  CTCAGTGCTAAAGTTAAATCCACAACCAGAGATTAGCATCTAAGTCTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGCTAAAGTTAAATCCACAACCAGAGATTAGCATCTAAGTCTTGA  850

seq1  GGAGGGACATGGACAGGG-AATGCTTGATCTAGGTCTCCATCCAAGGGGG  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGAGGGACATGGACAGGGAAATGCTTGATCTAGGTCTCCATCCAAGGGGG  900

seq1  CAG-AAACATTTCCAGGATAGGTGGGTTCTTTTCACACGAACAACATACA  948
      ||| ||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  CAGAAAACATTTCCAGGATAGGTGGGTTC-TTTCACACGAACAACATAC-  948

seq1  AACTTTAGGATTGCTGTCCATTGTTGTCCAATATGTTGGCCGTCTGCAGC  998
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AACCTTAGGATTGCTGTCCATTGTTGTCC-ATATGTTGGCCGTCTGCAGC  997

seq1  CTTGTTTGTATGAGGCTGAGGGACCTCACTTTTTAAGTCCAGGAAAATAA  1048
      ||||||||||||| ||||| ||||||||||||||||||||||| ||||||
seq2  CTTGTTTGTATGA-GCTGA-GGACCTCACTTTTTAAGTCCAGG-AAATAA  1044

seq1  ACAATTGGTAATTTTCTGTGGCTTCTGCATGAACCTCACATCTTTCCAGG  1098
      || ||||    | ||||||||| |||||||||||||||||||||| ||||
seq2  AC-ATTG----TATTCTGTGGCCTCTGCATGAACCTCACATCTTT-CAGG  1088

seq1  AAACAGGGTCATTTTAATAAGAAGAGCAATAGATAAGCATTCTATGATTC  1148
       ||||  |||| ||||||||||  ||||||  |||||||||| |||| ||
seq2  -AACA--GTCA-TTTAATAAGAGAAGCAATGAATAAGCATTCCATGA-TC  1133

seq1  TATTCCT  1155
       ||||||
seq2  CATTCCT  1140