BAC Information

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BAC

Clone NameB6Ng01-340L21
Chromosome13 (Build37)
Map Location 20,103,093 - 20,230,073
singlet/doubletdoublet
Overlap genenone
Upstream geneAmph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340L21.bB6Ng01-340L21.g
ACCGA124348GA124349
length9681,094
definitionB6Ng01-340L21.b B6Ng01-340L21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,103,093 - 20,104,067)(20,228,980 - 20,230,073)
sequence
gaattcattggtataaggcagaaaaccaggcttcatttctcagtagggtg
atctgaaattcttcagcaaatcctagagtgtcctgacatgggtcaaaaaa
gcctgaaagcactgaattcagcttcttttttttttttttttttttttttt
ttttggttcaggaatggtatctgggtctctgttcctctgtctgaaaacaa
accattcagtttttgcttttaacaaaagttttgttacccataaaaattct
ttaaacccagttaggaattgttggattcttcttgggaagtgccagcgaga
agagtaagagggggggctggagaaagaagaggaagcggggggtctgatag
aggaggcataggtggatcaggataggtggagcacatcaggataggtggag
cactgggtggaggagtgggataggtggagcacagagggctagggggagca
cagggtggagaaaagtaaggctgttgggaatttatatttagttttaacac
aatctcttgttttgttaatctcctgctttttgatgtctttctttaatcct
gatactgtttccagaaccctcttattcatttcctgtaaattgaccctctt
gttcttcttttcggcttctaaattccaatttaagtgaactgcctattcat
tatcatcccttattgcctaggacttcttgttttatttaaaagtacacatt
ggggagccactttatatttagctaggtctcccaaatttttccaaatactt
gcaagttgaagctctgtaattatcacacataaagccctgctagagtacca
gatggcagcgtatctacacacttcctccttttgaaaccttgtgcctacct
cttatcttcccatcctcatttacctacacctctgctttttatcctttttt
tggttgtttgtttggtgatagattgtggtgtttccgaacactggcagaat
tcggctagctcaggatgg
gaattccatgggctaaaggtaccaggagagcaagcacgtccagaaagaag
tgtgaaagcagagcctagctctctctacacttcccttggtgagaagctgg
gagctagacataacccctggtaggcagatagctagagagaagatccctgg
ttaagtaataaaggtgatgaacgtccaagatgaccagcttctccttcacc
tttctgacttgagacaaaggcctggtgaatgaaaaagagaaaagacacag
ttgcttctaggtatggtggaggagaaggtaactgtagaaatgagggagaa
tacagaaaggggcagaagcaaggacatttagagagtccagaataaagatg
gacagacagaacaaggccatgtgaggagagagtagggaagagagcataag
aggagctgccatctaacaaagttggggttgggccaagagactgaccatga
atcaaaaatcacatagccaaatggcagaattatatagggaccagaggagc
tggggtaaaggaagcccagcccagtttctggcctcaagaagtttaggata
aggggtagggtttgccagccaggtggagcctattaagattggatgctggg
agaacctggcagccagggtccactttgatatgttaatcagcatctcagcc
tttggtcctgggtttaacacctagcagtaaatgccttgcatgcttttgtt
ccccaccagtgagctagactggctcaacaagttcaagccctgatcaggac
atgttacacatcagttgtcagccaatcaatgagcctatcttccatcaaac
tgaacaaccctacgttagggaaaggagaattcttcagagacttaaaagtc
cccagccctcgagaagagactggatctttcagcttccccttacagagggt
cttttcctgtgtgtctgctgcatgtatgcatttcctgatccctagaaaac
aatttttcttcaactgctgacttgtctgatgttgtcttgcaatatcttga
aaatttctctgctgcaactgttgctctcaagattttctatcttttaattc
tttactggcaagagaaaatgactcaatttagaggccccgaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_20103093_20104067
seq2: B6Ng01-340L21.b_45_1012

seq1  GAATTCATTGGTATAAGGCAGAAAACCAGGCTTCATTTCTCAGTAGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGTATAAGGCAGAAAACCAGGCTTCATTTCTCAGTAGGGTG  50

seq1  ATCTGAAATTCTTCAGCAAATCCTAGAGTGTCCTGACATGGGTCAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAATTCTTCAGCAAATCCTAGAGTGTCCTGACATGGGTCAAAAAA  100

seq1  GCCTGAAAGCACTGAATTCAGCTTCTTTTTTTTTTTTTTTTTTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAAAGCACTGAATTCAGCTTCTTTTTTTTTTTTTTTTTTTTTTTTT  150

seq1  TTTTGGTTCAGGAATGGTATCTGGGTCTCTGTTCCTCTGTCTGAAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTCAGGAATGGTATCTGGGTCTCTGTTCCTCTGTCTGAAAACAA  200

seq1  ACCATTCAGTTTTTGCTTTTAACAGAAGTTTTGTTACCCATAAGAATTCT  250
      |||||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  ACCATTCAGTTTTTGCTTTTAACAAAAGTTTTGTTACCCATAAAAATTCT  250

seq1  TTAAACCCAGTTAGGAATTGTTGGATTCTTCTTGGGAAGTGCCAGCGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCCAGTTAGGAATTGTTGGATTCTTCTTGGGAAGTGCCAGCGAGA  300

seq1  AGAGTAAGAGGGTGGGCTGGAGAAAGAAGAGGAAGCGGGGGGTCTGATAG  350
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGAGGGGGGGCTGGAGAAAGAAGAGGAAGCGGGGGGTCTGATAG  350

seq1  AGGAGGCATAGGTGGATCAGGATAGGTGGAGCACATCAGGATAGGTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCATAGGTGGATCAGGATAGGTGGAGCACATCAGGATAGGTGGAG  400

seq1  CACTGGGTGGAGGAGTGGGATAGGTGGAGCACAGAGGGCTAGGGGGAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGTGGAGGAGTGGGATAGGTGGAGCACAGAGGGCTAGGGGGAGCA  450

seq1  CAGGGTGGAGAAGAGTAAGGCTGTTGGGAATTTATATTTAGTTTTAACAC  500
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGGAGAAAAGTAAGGCTGTTGGGAATTTATATTTAGTTTTAACAC  500

seq1  AATCTCTTGTTTTGTTAATCTCCTGCTTTTTGATGTCTTTCTTTAATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTTGTTTTGTTAATCTCCTGCTTTTTGATGTCTTTCTTTAATCCT  550

seq1  GATACTGTTTCCAGAACCCTCTTATTCATTTCCTGTAAATTGACCCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGTTTCCAGAACCCTCTTATTCATTTCCTGTAAATTGACCCTCTT  600

seq1  GTTCTTCTTTTCGGCTTCTAAATTCCAATTTAAGTGAACTGCCTATTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCTTTTCGGCTTCTAAATTCCAATTTAAGTGAACTGCCTATTCAT  650

seq1  TATCATCCCTTATTGCCTAGGACTTCTTGTTTTATTTAAAAGTACACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCCCTTATTGCCTAGGACTTCTTGTTTTATTTAAAAGTACACATT  700

seq1  GGGGAGCCACTTTATATTTAGCTAGGTCTCCC-AATTTTTCCAAATACTT  749
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGGGAGCCACTTTATATTTAGCTAGGTCTCCCAAATTTTTCCAAATACTT  750

seq1  GCAAGTTGAAGCTCTGTAATTATCACACATAAAG-CCTGCTAGAGTACCA  798
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCAAGTTGAAGCTCTGTAATTATCACACATAAAGCCCTGCTAGAGTACCA  800

seq1  GATGGCAGCGTATCTACACACTTCCTCC-TTTGAAACCTTGTGCCTACCT  847
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GATGGCAGCGTATCTACACACTTCCTCCTTTTGAAACCTTGTGCCTACCT  850

seq1  CTTATCTTCCCATCCTCATTTACCTACACCTCTGCTTTTTTATCCTTTTT  897
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTTATCTTCCCATCCTCATTTACCTACACCTCTGC-TTTTTATCCTTTTT  899

seq1  TTGTTTGTTTTGTTTTGTTGTTTGTTTGTTTGTTTGTTTTTTCTAAACAC  947
      ||| ||||||   |||| || | | |||      || | ||||  |||||
seq2  TTGGTTGTTT--GTTTGGTGATAGATTG------TGGTGTTTCCGAACAC  941

seq1  TTGCAAGAATCGGCTAGCTCAGGGATGG  975
      | |||  | |||||||||||| ||||||
seq2  TGGCAGAATTCGGCTAGCTCA-GGATGG  968

seq1: chr13_20228980_20230073
seq2: B6Ng01-340L21.g_67_1160 (reverse)

seq1  GCTTT-GGGGCCTCTTAATTGAGTTCATTTTCTC-TGCCAGTAAAAGAAT  48
      ||||| ||||||||| ||||||| |||||||||| ||||||| |||||||
seq2  GCTTTCGGGGCCTCTAAATTGAG-TCATTTTCTCTTGCCAGT-AAAGAAT  48

seq1  TAAAAGATAGGAAAATCCTGAGAGCAACAGGTTGCAGCAGAGAAA-TTTC  97
      ||||||||| ||||||| ||||||||||| ||||||||||||||| ||||
seq2  TAAAAGATA-GAAAATCTTGAGAGCAACA-GTTGCAGCAGAGAAATTTTC  96

seq1  AAGATATTGC-AGACAACATCAGACAAAGTCAGCAGTTG-AGGAAAATTG  145
      |||||||||| |||||||||||||| ||||||||||||| || |||||||
seq2  AAGATATTGCAAGACAACATCAGAC-AAGTCAGCAGTTGAAGAAAAATTG  145

seq1  TTTTCTAGGGATCAGGAAATGCATACATGCAGCAGACACACAGGAAAAGA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGGGATCAGGAAATGCATACATGCAGCAGACACACAGGAAAAGA  195

seq1  CCCTCTGTAAGGGGGAAGCTGAAAGATCCAGTCTCTTCTCGAGGGCTGGG  245
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTAA-GGGGAAGCTGAAAGATCCAGTCTCTTCTCGAGGGCTGGG  244

seq1  GACTTTTAAGTCTCTGAAGAATTCTCC-TTCCCTAACGTAGGGTTGTTCA  294
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GACTTTTAAGTCTCTGAAGAATTCTCCTTTCCCTAACGTAGGGTTGTTCA  294

seq1  GTTTGATGGAAGATAGGCTCATTGATTGGCTGACAACTGATGTGTAACAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATGGAAGATAGGCTCATTGATTGGCTGACAACTGATGTGTAACAT  344

seq1  GTCCTGATCAGGGCTTGAACTTGTTGAGCCAGTCTAGCTCACTGGTGGGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGATCAGGGCTTGAACTTGTTGAGCCAGTCTAGCTCACTGGTGGGG  394

seq1  AACAAAAGCATGCAAGGCATTTACTGCTAGGTGTTAAACCCAGGACCAAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGCATGCAAGGCATTTACTGCTAGGTGTTAAACCCAGGACCAAA  444

seq1  GGCTGAGATGCTGATTAACATATCAAAGTGGACCCTGGCTGCCAGGTTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGATGCTGATTAACATATCAAAGTGGACCCTGGCTGCCAGGTTCT  494

seq1  CCCAGCATCCAATCTTAATAGGCTCCACCTGGCTGGCAAACCCTACCCCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCATCCAATCTTAATAGGCTCCACCTGGCTGGCAAACCCTACCCCT  544

seq1  TATCCTAAACTTCTTGAGGCCAGAAACTGGGCTGGGCTTCCTTTACCCCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTAAACTTCTTGAGGCCAGAAACTGGGCTGGGCTTCCTTTACCCCA  594

seq1  GCTCCTCTGGTCCCTATATAATTCTGCCATTTGGCTATGTGATTTTTGAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCTGGTCCCTATATAATTCTGCCATTTGGCTATGTGATTTTTGAT  644

seq1  TCATGGTCAGTCTCTTGGCCCAACCCCAACTTTGTTAGATGGCAGCTCCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTCAGTCTCTTGGCCCAACCCCAACTTTGTTAGATGGCAGCTCCT  694

seq1  CTTATGCTCTCTTCCCTACTCTCTCCTCACATGGCCTTGTTCTGTCTGTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCTCTCTTCCCTACTCTCTCCTCACATGGCCTTGTTCTGTCTGTC  744

seq1  CATCTTTATTCTGGACTCTCTAAATGTCCTTGCTTCTGCCCCTTTCTGTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTATTCTGGACTCTCTAAATGTCCTTGCTTCTGCCCCTTTCTGTA  794

seq1  TTCTCCCTCATTTCTACAGTTACCTTCTCCTCCACCATACCTAGAAGCAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTCATTTCTACAGTTACCTTCTCCTCCACCATACCTAGAAGCAA  844

seq1  CTGTGTCTTTTCTCTTTTTCATTCACCAGGCCTTTGTCTCAAGTCAGAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTTTTCTCTTTTTCATTCACCAGGCCTTTGTCTCAAGTCAGAAA  894

seq1  GGTGAAGGAGAAGCTGGTCATCTTGGACGTTCATCACCTTTATTACTTAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGGAGAAGCTGGTCATCTTGGACGTTCATCACCTTTATTACTTAA  944

seq1  CCAGGGATCTTCTCTCTAGCTATCTGCCTACCAGGGGTTATGTCTAGCTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGATCTTCTCTCTAGCTATCTGCCTACCAGGGGTTATGTCTAGCTC  994

seq1  CCAGCTTCTCACCAAGGGAAGTGTAGAGAGAGCTAGGCTCTGCTTTCACA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTCTCACCAAGGGAAGTGTAGAGAGAGCTAGGCTCTGCTTTCACA  1044

seq1  CTTCTTTCTGGACGTGCTTGCTCTCCTGGTACCTTTAGCCCATGGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTGGACGTGCTTGCTCTCCTGGTACCTTTAGCCCATGGAATTC  1094