BAC Information

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BAC

Clone NameB6Ng01-341B21
Chromosome13 (Build37)
Map Location 47,989,668 - 48,151,352
singlet/doubletdoublet
Overlap gene4931429P17Rik
Upstream geneKif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
Downstream geneId4, LOC667351, Zfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341B21.bB6Ng01-341B21.g
ACCGA124600GA124601
length1,1321,139
definitionB6Ng01-341B21.b B6Ng01-341B21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,150,233 - 48,151,352)(47,989,668 - 47,990,823)
sequence
gaattcattttttgattaaactatgtgatactctcttttacaacgagggg
cagggagatggtgtaactggttgaagcacctgccgtgcaagcctggtgac
ctggggaccatagttgcatcccttcggggatggagaaagtctaccctcaa
aagttgtcctctgaccccctacacgagtgctgtaatatgtgaatacacac
atgtgtgcacactcatacactttaaaagaaaaaaaaatcaaccaaaatgt
ttttaaatgcatgctataaaaacctgtgtttatggcatgctcagagatga
caggtgacagacagcaggtgagtgctgttggaatatgacatggcccttat
aggctctgtttaacctagatgatgatgactctattttggaaggctaaggc
agcttaaggatgtagggactcactagagcaagggagtcactgaatccagt
ccttgagatacaacagcctggctccatttcctgcctttgctgcttcctct
ttggagatgtgatgtgtatgaccaatcagtcacctacactcctgctgctg
ggctttcctgttgaatttacttgcctcttaaactgtcagccccaacgatt
cctttttccttcaagttgcctttgacaggctacagcagtgaggagagtaa
ctagtaaagtaatatgataaaaaaaaaattgtaaaaggtgcattggtcat
gtgaccctgttctctcgatcccaggcatcattctttgtgtggctgttgta
attatcacacacacacacacacacacacacacacacacacacacacacac
tgggtcagtaagtggtgacatttccgtcctttaaagcagaaaactcccca
tcttcttttcattttggttttacatcatctggcaacccagaaaagaattt
caagcaccttttctctttaaaaaaaagaaaaaattcaataagttttattg
acctctcacatgtgtaaggaagcacccacatagaatctgtggagggacag
tgatagtcagggaaagggaatgaagggttatttgacagctctggcttctt
ctgccatcaggctcaagatcgtcttctctcaccagccactggcattccaa
tgtgacccttgactctctcttcctgcagaatg
gaattcacttctcagctataccagggtctccctaggccactgtaagggac
acagaggataaagaatgaagaaggaaagctgtagcactggaggttaaggg
agtatctgggctcatgagaagctctggacctgatatggtccttaagagtg
atccccggaaaatgaagcaagagggacaatcctttctaactctgcctcta
tgactcactcagtgaatgctgccaccagggaactatactaggtgggtgag
tcagctcctgtgagctgaaggcaatgcccagggagagacccagctgtgag
ccattagcagcaaacattcccagcagcagagagaataaatgcccaggttc
tcactggggacttcagcaacctacagtttctacttcaagaggaagctgaa
aactattgttctgattaaaggaatacagatggaaacttctgcccccttag
accaaagatgtcacctttaacaatgctctgttgagttcttagagcacatt
ttcttgggacagaaaagatattatcaattgttctgctatactgaagtcct
gagcaatgtcaaatgaaaggaatcctatattttcagggcacatggtgtgc
tctcttagcaagcacaaacaatagtaattatagccacagcttattgacta
ctaacagatagtttcttgtagcatgtatgatacatctacatccagttccc
agagaacctgaatactgggtatcttctctatttgaatggtgggaccaact
gctagttggaaggtggatggtttttctaacagtacccagccaagaaacaa
catacctggaatgaaacccagctcttcttggcccgcaagaacagttttct
ttaccgtatccccctgctttccaaacccacatatgaaaccaggttcctca
ttacaaatgctttcagagccattgaacattcattctaagggaaggcaaag
tgaagcgtcgagcccttcctgtatgatcaacgcattgatactatgatcat
gtgatatggcaccagtatagagcacggttgctagaattcatctggagcct
ggaagatattccgttaatggtggactcctgcaggtgcaataccctagctg
ttgttccccagattctagtctcccgagctggttatattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_48150233_48151352
seq2: B6Ng01-341B21.b_49_1180 (reverse)

seq1  CATTCTGAAAGGGAAGAGGAAGGAGTCAAGGCACCATTTGAAATGCCAGT  50
      ||||||| |  |||||||    |||||||||  |   ||| |||||||||
seq2  CATTCTGCA--GGAAGAG---AGAGTCAAGGGTCACATTGGAATGCCAGT  45

seq1  GGCTTGGTGAGGAGAGACTGAC-TGAGCCTGAT-GCAGAAGGAGCAAGAG  98
      ||| |||||||   ||||   | |||||||||| ||||||| ||| ||||
seq2  GGC-TGGTGAGAGAAGACGATCTTGAGCCTGATGGCAGAAGAAGCCAGAG  94

seq1  CTTGTCAAATAACCCCTCA-TCCCTTCCCCTGCCTATCACTGTCCCTCCA  147
      | ||||||||||||| ||| |||||| ||||| |||||||||||||||||
seq2  C-TGTCAAATAACCCTTCATTCCCTTTCCCTGACTATCACTGTCCCTCCA  143

seq1  CAGATTCTATGT-GGTGCTTCC-TACACATGTGAGA-GTCAAT-AAACT-  192
      |||||||||||| ||||||||| ||||||||||||| |||||| ||||| 
seq2  CAGATTCTATGTGGGTGCTTCCTTACACATGTGAGAGGTCAATAAAACTT  193

seq1  -ATGAATTTTT--CTTTTTTTAAAGAG-AAAGGTGCTTTGAATTC-TTTC  237
        |||||||||   ||||||||||||| ||||||||||  ||||| ||||
seq2  ATTGAATTTTTTCTTTTTTTTAAAGAGAAAAGGTGCTTGAAATTCTTTTC  243

seq1  TGGG-TGCCAGATGATGTAAAACCAAAATG-AAAGAAGAT-GGGAG-TTT  283
      |||| ||||||||||||||||||||||||| ||||||||| ||||| |||
seq2  TGGGTTGCCAGATGATGTAAAACCAAAATGAAAAGAAGATGGGGAGTTTT  293

seq1  CTGCTTTAAAGGACGG-AATGTCACCACTTACTGACCCAGTGTGTGTGTG  332
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGCTTTAAAGGACGGAAATGTCACCACTTACTGACCCAGTGTGTGTGTG  343

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATAATTACAACAGCCA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATAATTACAACAGCCA  393

seq1  CACAAAGAATGATGCCT-GGATCGAGAGAACAGGGTCACATGACCAATGC  431
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CACAAAGAATGATGCCTGGGATCGAGAGAACAGGGTCACATGACCAATGC  443

seq1  ACCTTTTACAATTTTTTTTTTATCATATTACTTTACTAGTTACTCTCCTC  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTACAATTTTTTTTTTATCATATTACTTTACTAGTTACTCTCCTC  493

seq1  ACTGCTGTAGCCTGTCAAAGGCAACTTGAAGGAAAAAGGAATCGTTGGGG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGTAGCCTGTCAAAGGCAACTTGAAGGAAAAAGGAATCGTTGGGG  543

seq1  CTGACAGTTTAAGAGGCAAGTAAATTCAACAGGAAAGCCCAGCAGCAGGA  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGTTTAAGAGGCAAGTAAATTCAACAGGAAAGCCCAGCAGCAGGA  593

seq1  GTGTAGGTGACTGATTGGTCATACACATCACATCTCCAAAGAGGAAGCAG  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGTGACTGATTGGTCATACACATCACATCTCCAAAGAGGAAGCAG  643

seq1  CAAAGGCAGGAAATGGAGCCAGGCTGTTGTATCTCAAGGACTGGATTCAG  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCAGGAAATGGAGCCAGGCTGTTGTATCTCAAGGACTGGATTCAG  693

seq1  TGACTCCCTTGCTCTAGTGAGTCCCTACATCCTTAAGCTGCCTTAGCCTT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCTTGCTCTAGTGAGTCCCTACATCCTTAAGCTGCCTTAGCCTT  743

seq1  CCAAAATAGAGTCATCATCATCTAGGTTAAACAGAGCCTATAAGGGCCAT  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATAGAGTCATCATCATCTAGGTTAAACAGAGCCTATAAGGGCCAT  793

seq1  GTCATATTCCAACAGCACTCACCTGCTGTCTGTCACCTGTCATCTCTGAG  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATTCCAACAGCACTCACCTGCTGTCTGTCACCTGTCATCTCTGAG  843

seq1  CATGCCATAAACACAGGTTTTTATAGCATGCATTTAAAAACATTTTGGTT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCATAAACACAGGTTTTTATAGCATGCATTTAAAAACATTTTGGTT  893

seq1  GATTTTTTTTTCTTTTAAAGTGTATGAGTGTGCACACATGTGTGTATTCA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTTTCTTTTAAAGTGTATGAGTGTGCACACATGTGTGTATTCA  943

seq1  CATATTACAGCACTCGTGTAGGGGGTCAGAGGACAACTTTTGAGGGTAGA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTACAGCACTCGTGTAGGGGGTCAGAGGACAACTTTTGAGGGTAGA  993

seq1  CTTTCTCCATCCCCGAAGGGATGCAACTATGGTCCCCAGGTCACCAGGCT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCATCCCCGAAGGGATGCAACTATGGTCCCCAGGTCACCAGGCT  1043

seq1  TGCACGGCAGGTGCTTCAACCAGTTACACCATCTCCCTGCCCCTCGTTGT  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGGCAGGTGCTTCAACCAGTTACACCATCTCCCTGCCCCTCGTTGT  1093

seq1  AAAAGAGAGTATCACATAGTTTAATCAAAAAATGAATTC  1120
      |||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAGTATCACATAGTTTAATCAAAAAATGAATTC  1132

seq1: chr13_47989668_47990823
seq2: B6Ng01-341B21.g_67_1205

seq1  GAATTCACTTCTCAGCTATACCAGGGTCTCCCTAGGCCACTGTAAGGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTCAGCTATACCAGGGTCTCCCTAGGCCACTGTAAGGGAC  50

seq1  ACAGAGGATAAAGAATGAAGAAGGAAAGCTGTAGCACTGGAGGTTAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGATAAAGAATGAAGAAGGAAAGCTGTAGCACTGGAGGTTAAGGG  100

seq1  AGTATCTGGGCTCATGAGAAGCTCTGGACCTGATATGGTCCTTAAGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTGGGCTCATGAGAAGCTCTGGACCTGATATGGTCCTTAAGAGTG  150

seq1  ATCCCCGGAAAATGAAGCAAGAGGGACAATCCTTTCTAACTCTGCCTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCGGAAAATGAAGCAAGAGGGACAATCCTTTCTAACTCTGCCTCTA  200

seq1  TGACTCACTCAGTGAATGCTGCCACCAGGGAACTATACTAGGTGGGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCACTCAGTGAATGCTGCCACCAGGGAACTATACTAGGTGGGTGAG  250

seq1  TCAGCTCCTGTGAGCTGAAGGCAATGCCCAGGGAGAGACCCAGCTGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCTGTGAGCTGAAGGCAATGCCCAGGGAGAGACCCAGCTGTGAG  300

seq1  CCATTAGCAGCAAACATTCCCAGCAGCAGAGAGAATAAATGCCCAGGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGCAGCAAACATTCCCAGCAGCAGAGAGAATAAATGCCCAGGTTC  350

seq1  TCACTGGGGACTTCAGCAACCTACAGTTTCTACTTCAAGAGGAAGCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGGGACTTCAGCAACCTACAGTTTCTACTTCAAGAGGAAGCTGAA  400

seq1  AACTATTGTTCTGATTAAAGGAATACAGATGGAAACTTCTGCCCCCTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTGTTCTGATTAAAGGAATACAGATGGAAACTTCTGCCCCCTTAG  450

seq1  ACCAAAGATGTCACCTTTAACAATGCTCTGTTGAGTTCTTAGAGCACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGATGTCACCTTTAACAATGCTCTGTTGAGTTCTTAGAGCACATT  500

seq1  TTCTTGGGACAGAAAAGATATTATCAATTGTTCTGCTATACTGAAGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGGACAGAAAAGATATTATCAATTGTTCTGCTATACTGAAGTCCT  550

seq1  GAGCAATGTCAAATGAAAGGAATCCTATATTTTCAGGGCACATGGTGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATGTCAAATGAAAGGAATCCTATATTTTCAGGGCACATGGTGTGC  600

seq1  TCTCTTAGCAAGCACAAACAATAGTAATTATAGCCACAGCTTATTGACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAGCAAGCACAAACAATAGTAATTATAGCCACAGCTTATTGACTA  650

seq1  CTAACAGATAGTTTCTTGTAGCATGTATGATACATCTACATCCAGTTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGATAGTTTCTTGTAGCATGTATGATACATCTACATCCAGTTCCC  700

seq1  AGAGAACCTGAATACTGGGTATCTTCTCTATTTGAATGGTGGGACCAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACCTGAATACTGGGTATCTTCTCTATTTGAATGGTGGGACCAACT  750

seq1  GCTAGTTGGAAGGTGGATGGTTTTTCTAACAGTACCCAGCCAAGAAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTGGAAGGTGGATGGTTTTTCTAACAGTACCCAGCCAAGAAACAA  800

seq1  CATACCTGGAATGAAACCCAGCTCTTCTTGG-CCGCAAGAACAGTTTTCT  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATACCTGGAATGAAACCCAGCTCTTCTTGGCCCGCAAGAACAGTTTTCT  850

seq1  TTACCGTATCCCCCTGC-TTCCAAACCCACATA-GAAACCAGGGTCCTCA  897
      ||||||||||||||||| ||||||||||||||| ||||||||| ||||||
seq2  TTACCGTATCCCCCTGCTTTCCAAACCCACATATGAAACCAGGTTCCTCA  900

seq1  TTACAAATGCTTTCAGGAGCCATTGAACATTTCATTCTAAAGGAAAGGCA  947
      ||||||||||||||| ||||||||||||| |||||||| |||| ||||||
seq2  TTACAAATGCTTTCA-GAGCCATTGAACA-TTCATTCT-AAGGGAAGGCA  947

seq1  AAAGTTGAAGCGTCAGAGCCCTTCCCTGTAATGATCAAACGCATTGATAA  997
      ||   ||||||||| |||||||| ||||| |||||| ||||||||||| |
seq2  AA--GTGAAGCGTC-GAGCCCTT-CCTGT-ATGATC-AACGCATTGAT-A  990

seq1  CTATGATCATGTGATAATGGCACAGGTGTTAGGAGCACGGGGTGGCAGAT  1047
      ||||||||||||||| |||||||  || |   |||||| || ||  ||| 
seq2  CTATGATCATGTGAT-ATGGCACCAGTAT--AGAGCAC-GGTTGCTAGAA  1036

seq1  TTCATCTGAAGCCCGGGAAGATATTCTGTAAAATGTGTGCTCTCTGCCAG  1097
      |||||||| || || ||||||||||| || ||  |||  ||| ||| |||
seq2  TTCATCTGGAG-CCTGGAAGATATTCCGTTAATGGTGGACTC-CTG-CAG  1083

seq1  TGTGCATTCACTAAGCTGTTTTGTCCCCACAGTATCTAGTCTCCC-AGCT  1146
       ||||| |  |  |||||  |||| ||| |||  ||||||||||| ||||
seq2  -GTGCAATACCCTAGCTG--TTGTTCCC-CAGATTCTAGTCTCCCGAGCT  1129

seq1  GGTTATATTC  1156
      ||||||||||
seq2  GGTTATATTC  1139