BAC Information

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BAC

Clone NameB6Ng01-342B24
Chromosome13 (Build37)
Map Location 101,686,657 - 101,826,794
singlet/doubletdoublet
Overlap geneLOC619917, EG619937
Upstream geneMccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865
Downstream gene4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342B24.bB6Ng01-342B24.g
ACCGA125304GA125305
length842941
definitionB6Ng01-342B24.b B6Ng01-342B24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,825,975 - 101,826,794)(101,686,657 - 101,687,570)
sequence
gaaattcatcaaatggtcagagagtcaagtcagggtagactcaattttca
tctcttccatttactctttattttgttccccttccattgttcatatactg
aagtggcaattatggctggcaagagacaccatttcccaatcttttcctgc
acattgcaggggaaagtagaaataatttgcctctgcttagtctgctaggg
ctgccagagacgggtgtgcccaccaacagttagctagaggttgagaacaa
caagggactggggaaagaacaggttctaaacgttatgaagcccttattgt
tcatctcacgctgttcagaactagctagaaaagtcactgcacgtgaccac
ctgaagactaaaaacttcccagtttgccttagaggactacaggtgaccag
aaggaaagcttcctgtcggttggcctcacctcaagacaccatgggctaag
aaaaaaatgcactgttgtgtggataaatgcctgcataggaaaatagatgc
actgacaaatagatggggagaggaagcagaggaagcaggtggaaggaagc
aaatcggtctgaggtaggtaaagcaggcaggcaggaaaagtggtgacctt
tcctctttcatcctcgctttcttctgtgtaaaccccagggcagcaaccaa
gaagagcccagagaccacaactgttgcttcttttctaccaataaagcttt
tcttctgtctgcttttttacacagttctagggattgcattttatttatca
tttatttattttgcggggaagggcacacctagaagttcagaaggacagtt
gtgcacacctgaggtcagatggtcaagggtgctacacagagg
gaattctatccattgtgaattgatatttttgtaagttatttgctaagggc
ctcatcttattcctttgcaagtagatattcacattgaagagactggtagc
ctgccctctctgttttttttctccaaaaatttctgaaaatttcttaaaat
taagactaatccagtgctttgggccttttcatctcagccttggaaataag
tattttcccaagaaaccctggttgcttttattgaagaatggtattcagaa
accaatatttagattaggggtgcatttaagtactgaaaattgttgttctc
tgcactgcaaacaatttttagtgaaagtcctgttgcattatctttctcct
cccggtgctcattatgcctagtttaatgtttttgttggtttgttttataa
aattaattttccagctagaaaatgtggattattaattttttcttagcaac
cagatcttaatatttgcctctaccgcctaacatttaaagaaagacttaat
tatccttttctttatgagtgtctgtttgaatatacgttactatgctctgt
gtgtgtgtgcacatgcgtgcgtttgtgtatgtgtgtgcctgtagatgcca
aaagatgataaaatcccctggaactggagtttatgcgcagtttgttaagc
tgtctgatgtgggtgttgggagcttgaactctggggtcttttggaagaac
cagcttttctgagccttctttatcagcattttagaaaaatccttatttat
gctttgaagattattaatataatgtaattacattattttatcccttccct
cctttttccttccaaacctttcccttgcttctcttctcaaattcatggcc
tctctcgttttttttttcttttttttttttgtttttatttgttaaacaca
ttcacacataacatattattatttttaaagcaattaacctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_101825975_101826794
seq2: B6Ng01-342B24.b_54_893 (reverse)

seq1  CCTCTGTGT-GCACCC-TGACC-TCTGACCTC-TGTGTGCAC-ACTGTCC  45
      ||||||||| |||||| ||||| |||||||||  |||||||| |||||||
seq2  CCTCTGTGTAGCACCCTTGACCATCTGACCTCAGGTGTGCACAACTGTCC  50

seq1  -TCTG-ACCTCTAGGTGTGCCCTTCCCCGC-AAATAAATAAATGATAAAT  92
       |||| || ||||||||||||||||||||| |||||||||||||||||||
seq2  TTCTGAACTTCTAGGTGTGCCCTTCCCCGCAAAATAAATAAATGATAAAT  100

seq1  -AAATGCAAT-CCTAGAACTGTGT-AAAAAGCAGACAGAAGAAAAGCTT-  138
       ||||||||| ||||||||||||| |||||||||||||||||||||||| 
seq2  AAAATGCAATCCCTAGAACTGTGTAAAAAAGCAGACAGAAGAAAAGCTTT  150

seq1  -ATGGTAG-AAAGAAGCAACAGTTGTGGTCTCTGGGCTCTTCTTGGTTGC  186
        |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTAGAAAAGAAGCAACAGTTGTGGTCTCTGGGCTCTTCTTGGTTGC  200

seq1  TG-CCTGGGG-TTACACAGAAG-AAGCGAGGATG-AAGAGG-AAGGTCAC  231
      || ||||||| ||||||||||| ||||||||||| |||||| ||||||||
seq2  TGCCCTGGGGTTTACACAGAAGAAAGCGAGGATGAAAGAGGAAAGGTCAC  250

seq1  CAC-TTTCCTGCCTGCCTGCTTTACCTACCTCAGACCGATTTGCTTCCTT  280
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTCCTGCCTGCCTGCTTTACCTACCTCAGACCGATTTGCTTCCTT  300

seq1  CCACCTGCTTCCTCTGCTTCCTCTCCCCATCTATTTGTCAGTGCATCTAT  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCTTCCTCTGCTTCCTCTCCCCATCTATTTGTCAGTGCATCTAT  350

seq1  TTTCCTATGCAGGCATTTATCCACACAACAGTGCATTTTTTTCTTAGCCC  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATGCAGGCATTTATCCACACAACAGTGCATTTTTTTCTTAGCCC  400

seq1  ATGGTGTCTTGAGGTGAGGCCAACCGACAGGAAGCTTTCCTTCTGGTCAC  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTCTTGAGGTGAGGCCAACCGACAGGAAGCTTTCCTTCTGGTCAC  450

seq1  CTGTAGTCCTCTAAGGCAAACTGGGAAGTTTTTAGTCTTCAGGTGGTCAC  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTCCTCTAAGGCAAACTGGGAAGTTTTTAGTCTTCAGGTGGTCAC  500

seq1  GTGCAGTGACTTTTCTAGCTAGTTCTGAACAGCGTGAGATGAACAATAAG  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTGACTTTTCTAGCTAGTTCTGAACAGCGTGAGATGAACAATAAG  550

seq1  GGCTTCATAACGTTTAGAACCTGTTCTTTCCCCAGTCCCTTGTTGTTCTC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCATAACGTTTAGAACCTGTTCTTTCCCCAGTCCCTTGTTGTTCTC  600

seq1  AACCTCTAGCTAACTGTTGGTGGGCACACCCGTCTCTGGCAGCCCTAGCA  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTAGCTAACTGTTGGTGGGCACACCCGTCTCTGGCAGCCCTAGCA  650

seq1  GACTAAGCAGAGGCAAATTATTTCTACTTTCCCCTGCAATGTGCAGGAAA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGCAGAGGCAAATTATTTCTACTTTCCCCTGCAATGTGCAGGAAA  700

seq1  AGATTGGGAAATGGTGTCTCTTGCCAGCCATAATTGCCACTTCAGTATAT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGGAAATGGTGTCTCTTGCCAGCCATAATTGCCACTTCAGTATAT  750

seq1  GAACAATGGAAGGGGAACAAAATAAAGAGTAAATGGAAGAGATGAAAATT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATGGAAGGGGAACAAAATAAAGAGTAAATGGAAGAGATGAAAATT  800

seq1  GAGTCTACCCTGACTTGACTCTCTGACCATTTGATGAATT  820
      ||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTACCCTGACTTGACTCTCTGACCATTTGATGAATT  840

seq1: chr13_101686657_101687570
seq2: B6Ng01-342B24.g_72_1012

seq1  GAATTCTATCCATTGTGAATTGATATTTTTGTAAGTTATTTGCTAAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCCATTGTGAATTGATATTTTTGTAAGTTATTTGCTAAGGGC  50

seq1  CTCATCTTATTCCTTTGCAAGTAGATATTCACATTGAAGAGACTGGTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTTATTCCTTTGCAAGTAGATATTCACATTGAAGAGACTGGTAGC  100

seq1  CTGCCCTCTCTGTTTTTTTTCTCCAAAAATTTCTGAAAATTTCTTAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCTCTGTTTTTTTTCTCCAAAAATTTCTGAAAATTTCTTAAAAT  150

seq1  TAAGACTAATCCAGTGCTTTGGGCCTTTTCATCTCAGCCTTGGAAATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTAATCCAGTGCTTTGGGCCTTTTCATCTCAGCCTTGGAAATAAG  200

seq1  TATTTTCCCAAGAAACCCTGGTTGCTTTTATTGAAGAATGGTATTCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCCAAGAAACCCTGGTTGCTTTTATTGAAGAATGGTATTCAGAA  250

seq1  ACCAATATTTAGATTAGGGGTGCATTTAAGTACTGAAAATTGTTGTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATATTTAGATTAGGGGTGCATTTAAGTACTGAAAATTGTTGTTCTC  300

seq1  TGCACTGCAAACAATTTTTAGTGAAAGTCCTGTTGCATTATCTTTCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGCAAACAATTTTTAGTGAAAGTCCTGTTGCATTATCTTTCTCCT  350

seq1  CCCGGTGCTCATTATGCCTAGTTTAATGTTTTTGTTGGTTTGTTTTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGTGCTCATTATGCCTAGTTTAATGTTTTTGTTGGTTTGTTTTATAA  400

seq1  AATTAATTTTCCAGCTAGAAAATGTGGATTATTAATTTTTTCTTAGCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTTTCCAGCTAGAAAATGTGGATTATTAATTTTTTCTTAGCAAC  450

seq1  CAGATCTTAATATTTGCCTCTACCGCCTAACATTTAAAGAAAGACTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTTAATATTTGCCTCTACCGCCTAACATTTAAAGAAAGACTTAAT  500

seq1  TATCCTTTTCTTTATGAGTGTCTGTTTGAATATACGTTACTATGCTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTTTCTTTATGAGTGTCTGTTTGAATATACGTTACTATGCTCTGT  550

seq1  GTGTGTGTGCACATGCGTGCGTTTGTGTATGTGTGTGCCTGTAGATGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGCACATGCGTGCGTTTGTGTATGTGTGTGCCTGTAGATGCCA  600

seq1  AAAGATGATAAAATCCCCTGGAACTGGAG-TTATGCGCAGTT--GTAAGC  647
      ||||||||||||||||||||||||||||| ||||||||||||   |||||
seq2  AAAGATGATAAAATCCCCTGGAACTGGAGTTTATGCGCAGTTTGTTAAGC  650

seq1  TGTCTGATGTGGGTGTTGGGAGC-TGAACTCT-GGGTC-TTTGGAAGAAC  694
      ||||||||||||||||||||||| |||||||| ||||| |||||||||||
seq2  TGTCTGATGTGGGTGTTGGGAGCTTGAACTCTGGGGTCTTTTGGAAGAAC  700

seq1  CAGC-TTTCTGAGCCT--CTTATCAGCA-TTTAGAAAAATCCTTATTTAT  740
      |||| |||||||||||   ||||||||| |||||||||||||||||||||
seq2  CAGCTTTTCTGAGCCTTCTTTATCAGCATTTTAGAAAAATCCTTATTTAT  750

seq1  GCTT--GAGATTA-TAATATAATGTAATTACATTA-TTTATCCCTT-CCT  785
      ||||   |||||| ||||||||||||||||||||| |||||||||| |||
seq2  GCTTTGAAGATTATTAATATAATGTAATTACATTATTTTATCCCTTCCCT  800

seq1  CC-TTCTCCTTCCAAACCTT--CCTTGC-TCTC-TCTCAAATTCATGGCC  830
      || || ||||||||||||||  |||||| |||| ||||||||||||||||
seq2  CCTTTTTCCTTCCAAACCTTTCCCTTGCTTCTCTTCTCAAATTCATGGCC  850

seq1  TCTCTCGTTTTTTTTT--CTTTTTTTTTTTGTTTTTATTTGTTAAACACA  878
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  TCTCTCGTTTTTTTTTTCTTTTTTTTTTTTGTTTTTATTTGTTAAACACA  900

seq1  TACACACAT-ACATAT--ATATTTTT-AAGC-ATTAACCTG  914
      | ||||||| ||||||   ||||||| |||| |||||||||
seq2  TTCACACATAACATATTATTATTTTTAAAGCAATTAACCTG  941