BAC Information

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BAC

Clone NameB6Ng01-342I22
Chromosome13 (Build37)13 (Build37)
Map Location 66,846,105 - 66,847,29766,162,921 - 66,164,012
singlet/doubletsingletsinglet
Overlap geneLOC666027
Upstream geneLOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106
Downstream geneLOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342I22.bB6Ng01-342I22.g
ACCGA125606GA125607
length1,1811,096
definitionB6Ng01-342I22.b B6Ng01-342I22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,846,105 - 66,847,297)(66,162,921 - 66,164,012)
sequence
gaattccaggttcttggataacccacttgccacttttgttgtggcaggaa
agaagatgttgatactatgaaaaagagaactaggaaggcagatgagagaa
aagagagaagctaattttacatagcacagcaaattctttgccctaactct
gagtctaaccctaaccctgatatttcttctttatgtaatagagatcctag
agattcaatgggatataagaataatagtggccacctcaagcctacccctg
agcctacccctgatttatcctaaacctttaaccctatcttaaacctcaca
ccttaatttcctaaccaccctaaccctaatcctaaccacccttatcctaa
tcctaaccataaccctctgatcgcctaatcctaactccagtcctgcttac
tgtgggggatatctcttaatatataatatttcttaattatacctttgaat
tgagaaactcttgcttaatctcgatcttttgagatgttcagatccacctt
taatctaggcaatagattcttttggcatcccgcatatatgaaagacattg
aacagggtagttctttcactttttttatacgtgccattcttttttataaa
acaaaggtgatttgcttgtgtggtttttctaactagcattaaaaagtact
tatttctttagaattctggtacatcagctataataacccgcagcaggaaa
tcaaccagtccttgatttttctagtttctgttggctgagagcctttattg
ggacattctattaaatttcctttctatctacatagagagattcattctat
atttgagatatgtttatctagagaacctgtactaatccaactgtggtttt
tctctatttcgccactgatgaagatgtgctgtctattaagagggcacaac
agtgtttcccttatgtttctggcttttctcccagggttatttaatgccta
tcattggtgaaaggtgctgtggtttccctgagcccagcatgaagcacaaa
tcaaactctcgtttcctaaaatcctctttaatgttaattgcctaagcatt
cttcactcagtgggtcagattgaatactacactgcacaggagtatgggcc
ttatgtaaggcattcactttgattcaagaagaaaatgccagttaagctca
gagctcagttaaagtcttgaagtcagccctt
gaattcaaactcatgacctttgggagaaccgtttgtgcccttaatcgcta
agctacctgttctcagtttttacatttgaccttttggcgtcatggccacc
tgaggggacaggaacaggatagggaatctgcgcatgctcactcgccggag
gcgggtgaaagtcctgtctcaaagatttttctttttggaagaaatgaaca
ttttacttaaactttagaagagatgagaaagaaaacccacgttttcctgg
gaagccgtgagcgaggcgccgcagcccccgccgaactcctccccgttccc
cgcgccaaactgtggaggaggcccggaagcagaaaccgcgtaacagcttt
tattttaattattgttgttgataattgataaagttcaacctctgtctcgc
ggaaacctggaaataaagtttcttcctcggtttatatttgacttccggtg
gccacagggagaaaacaaagaccaaggacctttcagaggcaatgaaatga
atttctaacctggagccagactcgtgatcctgaacagcggaggagtctag
cctcggctcgggaaaggagttctcacctggaagtggggctatctgggagg
tacgtaataaacagacacagactgcttttttgtgtgcaagctgacaggcg
gtttttcaaggcttagagtttctctctcactctctgcactgctcgctgcc
ttggtcacagctcaaggctgcacgctctgctttctcctgtgtgcttttca
cacacatgcctcacatgctcctcacacgagcctcacaaacatgtctcaca
catgtttcacatgcctcacactagcctcacacacacacacacacctccaa
cgcctcacacatgcctctcacacatctctcacatgcctcacactagcctc
acacacacacctccagcacctcacacatgcctctcacacatgtctcacat
gcctcacactagcttcacacacacatcacacacgcctcacacacatactc
acagtctcacacacacgctcacacatgtcttcacatgccttcacactagc
ctccaccacaccaccgcacgatcaccattccggcctcacacacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66846105_66847297
seq2: B6Ng01-342I22.b_44_1224 (reverse)

seq1  AAGGGCCTGACTTC-AGACCTTACCTGAGCTTTCCTGAGCTTACTTGCCC  49
      ||||| |||||||| |||| ||| |||||||   |||||||||  || | 
seq2  AAGGG-CTGACTTCAAGACTTTAACTGAGCT---CTGAGCTTAACTGGCA  46

seq1  TCTTCTTCCTGAAATCAAGGTGAATGGCTTACATA--GCCCATTACTCCT  97
      | |||||| || |||||| ||||||| ||||||||  ||||| |||||||
seq2  TTTTCTTCTTG-AATCAAAGTGAATGCCTTACATAAGGCCCA-TACTCCT  94

seq1  GTGCAGTGTAGGTATCAATCTGACCCACTGAGTGGAAGAATGCCTAGGCA  147
      |||||||||||   ||||||||||||||||||| ||||||||| ||||||
seq2  GTGCAGTGTAGTATTCAATCTGACCCACTGAGT-GAAGAATGCTTAGGCA  143

seq1  ATTAACATTAAAGAGGGATTTTTAGGAAACGAGAGTTTTGATTTGTGGCT  197
      ||||||||||||||||   |||||||||||||||| |||||||||| |||
seq2  ATTAACATTAAAGAGG--ATTTTAGGAAACGAGAG-TTTGATTTGT-GCT  189

seq1  TCATGCTGGGCTCAGGGAAACCACAGCACCCTTTCACCAATGATAGGCAT  247
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCATGCTGGGCTCAGGGAAACCACAGCA-CCTTTCACCAATGATAGGCAT  238

seq1  TAAATAACCCTGGGAGAAAAGCCAGAAACATAAGGGAAACACTGTTGTGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAACCCTGGGAGAAAAGCCAGAAACATAAGGGAAACACTGTTGTGC  288

seq1  CCTCTTAATAGACAGCACATCTTCATCAGTGGCGAAATAGAGAAAAACCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAATAGACAGCACATCTTCATCAGTGGCGAAATAGAGAAAAACCA  338

seq1  CAGTTGGATTAGTACAGGTTCTCTAGATAAACATATCTCAAATATAGAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGATTAGTACAGGTTCTCTAGATAAACATATCTCAAATATAGAAT  388

seq1  GAATCTCTCTATGTAGATAGAAAGGAAATTTAATAGAATGTCCCAATAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTCTATGTAGATAGAAAGGAAATTTAATAGAATGTCCCAATAAA  438

seq1  GGCTCTCAGCCAACAGAAATTAGAAAAATCAAGGACTGGTTGATTTCCTG  497
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGCTCTCAGCCAACAGAAACTAGAAAAATCAAGGACTGGTTGATTTCCTG  488

seq1  CTGCGGGTTATTATAGCTGATGTACCAGAATTCTAAAGAAATAAGTACTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGGTTATTATAGCTGATGTACCAGAATTCTAAAGAAATAAGTACTT  538

seq1  TTTAATGCTAGTTAGAAAAATCACACAAGCAAATCACCTTTGTTTTATAA  597
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTAATGCTAGTTAGAAAAACCACACAAGCAAATCACCTTTGTTTTATAA  588

seq1  AAAAGAATGGCACGTATAAAAAAAGTGAAAGAACTACCCTGTTCAATGTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATGGCACGTATAAAAAAAGTGAAAGAACTACCCTGTTCAATGTC  638

seq1  TTTCATATATGCGGGATGCCAAAAGAATCTATTGCCTAGATTAAAGGTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATATGCGGGATGCCAAAAGAATCTATTGCCTAGATTAAAGGTGG  688

seq1  ATCTGAACATCTCAAAAGATCGAGATTAAGCAAGAGTTTCTCAATTCAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAACATCTCAAAAGATCGAGATTAAGCAAGAGTTTCTCAATTCAAA  738

seq1  GGTATAATTAAGAAATATTATATATTATTAAGAGATATCCCCCACAGTAA  797
      ||||||||||||||||||||||   |||||||||||||||||||||||||
seq2  GGTATAATTAAGAAATATTATA---TATTAAGAGATATCCCCCACAGTAA  785

seq1  GCAGGACTGGAGTTAGGATTAGGCGATCAGAGGGTTATGGTTAGGATTAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACTGGAGTTAGGATTAGGCGATCAGAGGGTTATGGTTAGGATTAG  835

seq1  GATAAGGGTGGTTAGGATTAGGGTTAGGGTGGTTAGGAAATTAAGGTGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGGGTGGTTAGGATTAGGGTTAGGGTGGTTAGGAAATTAAGGTGTG  885

seq1  AGGTTTAAGATAGGGTTAAAGGTTTAGGATAAATCAGGGTTAGGCTCAGG  947
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGGTTTAAGATAGGGTTAAAGGTTTAGGATAAATCAGGGGTAGGCTCAGG  935

seq1  GGTAGGCTTGAGGTGGCCACTATTATTCTTATATCCCATTGAATCTCTAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGCTTGAGGTGGCCACTATTATTCTTATATCCCATTGAATCTCTAG  985

seq1  GATCTCTATTACATAAAGAAGAAATATCAGGGTTAGGGTTAGACTCAGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTATTACATAAAGAAGAAATATCAGGGTTAGGGTTAGACTCAGAG  1035

seq1  TTAGGGCAAAGAATTTGCTGTGCTATGTAAAATTAGCTTCTCTCTTTTCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGCAAAGAATTTGCTGTGCTATGTAAAATTAGCTTCTCTCTTTTCT  1085

seq1  CTCATCTGCCTTCCTAGTCCTCTTTTTCATAGTATCAACATCTTCTTTCC  1147
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTCATCTGCCTTCCTAGTTCTCTTTTTCATAGTATCAACATCTTCTTTCC  1135

seq1  TGCCACAACGAAAGTGGCAAGTGGGTTATCCAAGAACCTGGAATTC  1193
      ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGCCACAACAAAAGTGGCAAGTGGGTTATCCAAGAACCTGGAATTC  1181

seq1: chr13_66162921_66164012
seq2: B6Ng01-342I22.g_63_1158 (reverse)

seq1  TGTGTGTGTGAGGCGGGTATGGTGTTTGTGC----GTGTGTGTGAGGCTA  46
      |||||||||||||| || |||||| | ||||    |||||   |||||||
seq2  TGTGTGTGTGAGGCCGGAATGGTGATCGTGCGGTGGTGTGGTGGAGGCTA  50

seq1  GTGTG-AGGCATGTG-AGACATGTGTGAGGCGTGTGTGTGAGGCCTGTGA  94
      ||||| ||||||||| |||||||||||| |||||||||||| | ||||||
seq2  GTGTGAAGGCATGTGAAGACATGTGTGA-GCGTGTGTGTGA-GACTGTGA  98

seq1  GGTATGTGTGTGAGGCGTGTGTGATGTGTGTGTGAAGCTAGTGTGAGGCA  144
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GTATGTGTGTGAGGCGTGTGTGATGTGTGTGTGAAGCTAGTGTGAGGCA  147

seq1  TGTGAGACATGTGTGAGAGGCATGTGTGAGGTGCTGGAGGTGTGTGTGTG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGACATGTGTGAGAGGCATGTGTGAGGTGCTGGAGGTGTGTGTGTG  197

seq1  AGGCTAGTGTGAGGCATGTGAGAGATGTGTGAGAGGCATGTGTGAGGCGT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGTGTGAGGCATGTGAGAGATGTGTGAGAGGCATGTGTGAGGCGT  247

seq1  TGGAGGTGTGTGTGTGTGTGTGAGGCTAGTGTGAGGCATGTGAAACATGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTGTGTGTGTGTGTGTGAGGCTAGTGTGAGGCATGTGAAACATGT  297

seq1  GTGAGACATGTTTGTGAGGCTCGTGTGAGGAGCATGTGAGGCTTGTGTGT  344
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTGAGACATGTTTGTGAGGCTCGTGTGAGGAGCATGTGAGGCATGTGTGT  347

seq1  GAAAAACACACAGGAGAAAGCAGAGCGTGCAGCCTTGAGCTGTGACCAAG  394
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCACACAGGAGAAAGCAGAGCGTGCAGCCTTGAGCTGTGACCAAG  397

seq1  GCAGCGAGCAGTGCAGAGAGTGAGAGAGAAACTCTAAGCCTTGAAAAACC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGAGCAGTGCAGAGAGTGAGAGAGAAACTCTAAGCCTTGAAAAACC  447

seq1  GCCTGTCAGCTTGCACACAAAAAAGCAGTCTGTGTCTGTTTATTACGTGC  494
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCCTGTCAGCTTGCACACAAAAAAGCAGTCTGTGTCTGTTTATTACGTAC  497

seq1  CTCCCAGATAGCCCCACTTCCAGGTGAAAACTCTGATCCCGAGCCGAGGC  544
      ||||||||||||||||||||||||||| |||||   ||||||||||||||
seq2  CTCCCAGATAGCCCCACTTCCAGGTGAGAACTCCTTTCCCGAGCCGAGGC  547

seq1  TAGACTCCTCCGCTGTTCAGGATCACGAGTCTGGCTCCAGGTTAGAAATT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCCTCCGCTGTTCAGGATCACGAGTCTGGCTCCAGGTTAGAAATT  597

seq1  CATTTCATGGCCTCTGAAAGGTCCTTGGTCTTTGTTTTCTCCCTGTGGCC  644
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATTGCCTCTGAAAGGTCCTTGGTCTTTGTTTTCTCCCTGTGGCC  647

seq1  ACCGGAAGTCAAATATAAACCGAGGAAGAAACTTTATTTCCAGGTTTCCG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGAAGTCAAATATAAACCGAGGAAGAAACTTTATTTCCAGGTTTCCG  697

seq1  CGAGACAGAGGTTGAACTTTATCAATTATCAACAACAATAATTAAAATAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAGAGGTTGAACTTTATCAATTATCAACAACAATAATTAAAATAA  747

seq1  AAGCTGTTACGCGGTTTCTGCTTCCGGGCCTCCTCCACAGTTTGGCGCGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTTACGCGGTTTCTGCTTCCGGGCCTCCTCCACAGTTTGGCGCGG  797

seq1  GGAACGGGGAGGAGTTTGGTGGGGGCTGCGGC-TCTCGCTCACGGCTTCC  843
      |||||||||||||||| || ||||||||||||  ||||||||||||||||
seq2  GGAACGGGGAGGAGTTCGGCGGGGGCTGCGGCGCCTCGCTCACGGCTTCC  847

seq1  CAGGAAAACGTGGGTTTTCTTTCTCATCTCTTCTAAAGTTTAAGTAAAAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAACGTGGGTTTTCTTTCTCATCTCTTCTAAAGTTTAAGTAAAAT  897

seq1  GTTCATTTCTTCCAAAAAGAAAAATCTTTGAGACAGGACTTTCACCCGCC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTCTTCCAAAAAGAAAAATCTTTGAGACAGGACTTTCACCCGCC  947

seq1  TCCGGCGAGTGAGCATGCGCAGATTCCCTATCCTGTTCCTGTCCCCTCAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGCGAGTGAGCATGCGCAGATTCCCTATCCTGTTCCTGTCCCCTCAG  997

seq1  GTGGCCATGACGCCAAAAGGTCAAATGTAAAAACTGAGAACAGGTAGCTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCATGACGCCAAAAGGTCAAATGTAAAAACTGAGAACAGGTAGCTT  1047

seq1  AGCGATTAAGGGCACAAACGGTTCTCCCAAAGGTCATGAGTTTGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATTAAGGGCACAAACGGTTCTCCCAAAGGTCATGAGTTTGAATTC  1096