BAC Information

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BAC

Clone NameB6Ng01-344O07
Chromosome13 (Build37)
Map Location 61,848,970 - 61,926,091
singlet/doubletdoublet
Overlap geneLOC673332, BC052688, EG638502
Upstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415
Downstream geneLOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344O07.bB6Ng01-344O07.g
ACCGA127261GA127262
length1,1471,108
definitionB6Ng01-344O07.b B6Ng01-344O07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,848,970 - 61,850,115)(61,924,967 - 61,926,091)
sequence
gaattccagcacagccagggctacacagagaaaccctgtctcaataaaac
agagagagagagagagagagagagagagagagagaatgaatgtgttagaa
tgtgttaggactagacatgatttgaggaagtaaactctgaaattcaacct
cagtgacatattttctccagcaggcagacatttcctacatctccccaaat
gacactactaactgagaagtattgatttatttgccatcaatcctctatgc
ttgctttttgttatataagccaactcatgatgaagaaaaactctggataa
gtgttatttgccacaaaccctgggttatagtagtcaatgtttatacaaga
ataacatcatgaatgaaattttctttgctgaccaacttcatttaatttta
tttacggggtttgtctgcatctttgggtgagtatgtgcatgtctatgaag
atttccaaaattattaagttgttgtatcttcttctagcagaagatacacc
aagatgtccaaacctgactttgtccctgggaatgaaattttcttaattac
ttggccatgtctctagccatctaaataattaaagtgttttatatcatcat
gatgtcaggaaatagaaaaaaatcttatacaagagaaaaaccctatccat
gttgatgaccttgttatagcctgtaacatcacagatgttttccatatcag
ggacaacatcctgtttcttctcttttcatcagagccttgaaggaagtaaa
ttatttcccatggtccctggagtgttgtagtagagatcaccaattgtgct
ggtggttttattttcaaacatttggaatagatattaaagtttgttctatg
tctttcaaacccatttacaaacgtatattatgcgatccttgacttccttc
tgtgatttctgttcagctttaatcccacttttcttgttgataggtactct
tctactgcatgaaatgaattggatactcgtcttctaagtggtccattgtt
tatttaaatatgagggcagtgagatcttacattccagtaaggttgctggt
gaaaggcattggtggggcgctgctttgtggtttcattttcctcacatttc
ctcctggagagtggttgttatgcaatctagctttgtgtcagcactaa
gaattccagttttttgagctatactttttacattttatatgtagtttttt
tttttttttttgcatgcatgtgtctgggctctgtattttctgagaccaga
agacaaccgcaaacacttggcaataatagttaacaaccaagtagtttggg
gaacgggacccctgtctgctgtaacaatatccagttcatgttaactgtta
ggctgtctatatggcaaggtgcttatttaaattgtacttttgtatatgtt
aagtaaaaatattgcattattttctacttcattttctattctttatgcat
tcccaaccgtgttcaaatatcttctttttaaggataaaaaataattcaca
aatacatgaagaaaacctgctgtgtgcattttctttgactgcatttgttt
tttcaggtatgaataatttgcattgaatatgccattaggaagctcatcgc
agcctgaggataatttatttcactctgggagaatctgacccttaagaata
aaacttacagtggtaaacatctcagataacactggtgtcaggaacccgaa
cttctagagctgcagcgaagactgtggcaaatttcctgagacaatcacag
tgggccttggctctctggaccttgcaacacaccctgatgaacacttttga
cttggatgactgtgaaatcctggtgtcctcactttgtaagcaccatgaat
ataggcatgtataaccatgcctggtttaggtggcttccacttcaattact
aatgcattagaattacaacatgtgaaagacgaacagttccaataaaacat
attcagaagtcacttaactgtgtgaccctcagttttaccatctgtagaat
aaaaatagaagtctacctgtagtggctattcctgggttgtcaacttgact
gtatttgggaatgaactacaatccagaattggaaggctcaccagtgaccc
ttatctggaggcttggagatcttatctggatcttggtttggagatcttga
tccacagtgcttatgattcagaagattgattcgagtttacgaacacacct
tatctgggctacactctgctggagacaattagacattgagaagagtctag
ctttgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_61848970_61850115
seq2: B6Ng01-344O07.b_47_1193

seq1  GAATTCCAGCACAGCCAGGGCTACACAGAGAAACCCTGTCTCAATAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACAGCCAGGGCTACACAGAGAAACCCTGTCTCAATAAAAC  50

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAATGTGTTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAATGTGTTAGAA  100

seq1  TGTGTTAGGACTAGACATGATTTGAGGAAGTAAACTCTGAAATTCAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAGGACTAGACATGATTTGAGGAAGTAAACTCTGAAATTCAACCT  150

seq1  CAGTGACATATTTTCTCCAGCAGGCAGACATTTCCTACATCTCCCCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACATATTTTCTCCAGCAGGCAGACATTTCCTACATCTCCCCAAAT  200

seq1  GACACTACTAACTGAGAAGTATTGATTTATTTGCCATCAATCCTCTATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTACTAACTGAGAAGTATTGATTTATTTGCCATCAATCCTCTATGC  250

seq1  TTGCTTTTTGTTATATAAGCCAACTCATGATGAAGAAAAACTCTGGATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTTGTTATATAAGCCAACTCATGATGAAGAAAAACTCTGGATAA  300

seq1  GTGTTATTTGCCACAAACCCTGGGTTATAGTAGTCAATGTTTATACAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATTTGCCACAAACCCTGGGTTATAGTAGTCAATGTTTATACAAGA  350

seq1  ATAACATCATGAATGAAATTTTCTTTGCTGACCAACTTCATTTAATTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATCATGAATGAAATTTTCTTTGCTGACCAACTTCATTTAATTTTA  400

seq1  TTTACGGGGTTTGTCTGCATCTTTGGGTGAGTATGTGCATGTCTATGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGGGGTTTGTCTGCATCTTTGGGTGAGTATGTGCATGTCTATGAAG  450

seq1  ATTTCCAAAATTATTAAGTTGTTGTATCTTCTTCTAGCAGAAGATACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAAATTATTAAGTTGTTGTATCTTCTTCTAGCAGAAGATACACC  500

seq1  AAGATGTCCAAACCTGACTTTGTCCCTGGGAATGAAATTTTCTTAATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTCCAAACCTGACTTTGTCCCTGGGAATGAAATTTTCTTAATTAC  550

seq1  TTGGCCATGTCTCTAGCCATCTAAATAATTAAAGTGTTTTATATCATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCATGTCTCTAGCCATCTAAATAATTAAAGTGTTTTATATCATCAT  600

seq1  GATGTCAGGAAATAGAAAAAAATCTTATACAAGAGAAAAACCCTATCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAGGAAATAGAAAAAAATCTTATACAAGAGAAAAACCCTATCCAT  650

seq1  GTTGATGACCTTGTTATAGCCTGTAACATCACAGATGTTTTCCATATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGACCTTGTTATAGCCTGTAACATCACAGATGTTTTCCATATCAG  700

seq1  GGACAACATCCTGTTTCTTCTCTTTTCATCAGAGCCTTGAAGGAAGTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACATCCTGTTTCTTCTCTTTTCATCAGAGCCTTGAAGGAAGTAAA  750

seq1  TTATTTCCCATGGTCCCTGGAGTGTTGTAGTAGAGATCACCAATTGTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCCATGGTCCCTGGAGTGTTGTAGTAGAGATCACCAATTGTGCT  800

seq1  GGTGGTTTTATTTTCAAACATTTGGAATAGATATTAAAGTTTGTTCTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTTTATTTTCAAACATTTGGAATAGATATTAAAGTTTGTTCTATG  850

seq1  TCTTTCAAACCCATTTACAAACGTATATTATGCGATCCTTGACTTCCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAAACCCATTTACAAACGTATATTATGCGATCCTTGACTTCCTTC  900

seq1  TGTGATTTCTGTTCAGCTTTAATCCCACTTTTCTTGTTGATAGGTACTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTCTGTTCAGCTTTAATCCCACTTTTCTTGTTGATAGGTACTCT  950

seq1  TCTACTGCAATGAAATGAATTGGATACTCGTCTTCTAAGTGGTCCATTGT  1000
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGC-ATGAAATGAATTGGATACTCGTCTTCTAAGTGGTCCATTGT  999

seq1  TTATTTAAATATGAGGGCAGTGAGATCTTACATTTCCAGTAAGGTTGCTG  1050
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTATTTAAATATGAGGGCAGTGAGATCTTACA-TTCCAGTAAGGTTGCTG  1048

seq1  GTGAAA-GCA-TGGT-GGGCGCTGCTTTGT-GTTTCATTTT-CTCACATA  1095
      |||||| ||| |||| |||||||||||||| |||||||||| ||||||| 
seq2  GTGAAAGGCATTGGTGGGGCGCTGCTTTGTGGTTTCATTTTCCTCACAT-  1097

seq1  TTCCTC--TGAGAGTTGGTTGTTATGCATCCTAGCTTTTGTGTCAGTCAC  1143
      ||||||   ||||| |||||||||||||  ||||| |||||||||| |||
seq2  TTCCTCCTGGAGAG-TGGTTGTTATGCAATCTAGC-TTTGTGTCAG-CAC  1144

seq1  TAA  1146
      |||
seq2  TAA  1147

seq1: chr13_61924967_61926091
seq2: B6Ng01-344O07.g_66_1173 (reverse)

seq1  GAGCAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCA  50
      |||||| |||||||||  |||||  |||||||  || |||||||||||||
seq2  GAGCAA-AGCTAGACT--CTTCT--CAATGTC--TA-ATTGTCTCCAGCA  42

seq1  GAAGGTGTAGCCCAGATTAAAGGTGTGTTCCTTAAACTCGGAAATTCAAT  100
      ||  |||||||||||||  |||||||||| | ||||||||   | |||||
seq2  GA--GTGTAGCCCAGAT--AAGGTGTGTT-CGTAAACTCG---AATCAAT  84

seq1  CTTCTGGAATCCATAGCCACTGTGGATCAAGATCTCCAAACCAAGATCCA  150
      ||||| |||| ||||  |||||||||||||||||||||||||||||||||
seq2  CTTCT-GAAT-CATAAGCACTGTGGATCAAGATCTCCAAACCAAGATCCA  132

seq1  GATAAGGATCTCCAAGCCTCCAGATAAGGGTCACTGGTGAGCCTTCCAAT  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAA-GATCTCCAAGCCTCCAGATAAGGGTCACTGGTGAGCCTTCCAAT  181

seq1  TCTGGATTGTAGTTCATT-CCAAATACAGTCAAGTTGACAA-CCAGGAAT  248
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  TCTGGATTGTAGTTCATTCCCAAATACAGTCAAGTTGACAACCCAGGAAT  231

seq1  AGCCACTACAGGTAGACTTCTATTTTTATTCTACAGATGGTAAAACTGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTACAGGTAGACTTCTATTTTTATTCTACAGATGGTAAAACTGAG  281

seq1  GGTCACACAGTTAAGTGACTTCTGAATATGTTTTATTGGAACTGTTCGTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACACAGTTAAGTGACTTCTGAATATGTTTTATTGGAACTGTTCGTC  331

seq1  TTTCACATGTTGTAATTCTAATGCATTAGTAATTGAAGTGGAAGCCACCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATGTTGTAATTCTAATGCATTAGTAATTGAAGTGGAAGCCACCT  381

seq1  AAACCAGGCATGGTTATACATGCCTATATTCATGGTGCTTACAAAGTGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGGCATGGTTATACATGCCTATATTCATGGTGCTTACAAAGTGAG  431

seq1  GACACCAGGATTTCACAGTCATCCAAGTCAAAAGTGTTCATCAGGGTGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAGGATTTCACAGTCATCCAAGTCAAAAGTGTTCATCAGGGTGTG  481

seq1  TTGCAAGGTCCAGAGAGCCAAGGCCCACTGTGATTGTCTCAGGAAATTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGGTCCAGAGAGCCAAGGCCCACTGTGATTGTCTCAGGAAATTTG  531

seq1  CCACAGTCTTCGCTGCAGCTCTAGAAGTTCGGGTTCCTGACACCAGTGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTCTTCGCTGCAGCTCTAGAAGTTCGGGTTCCTGACACCAGTGTT  581

seq1  ATCTGAGATGTTTACCACTGTAAGTTTTATTCTTAAGGGTCAGATTCTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGATGTTTACCACTGTAAGTTTTATTCTTAAGGGTCAGATTCTCC  631

seq1  CAGAGTGAAATAAATTATCCTCAGGCTGCGATGAGCTTCCTAATGGCATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAAATAAATTATCCTCAGGCTGCGATGAGCTTCCTAATGGCATA  681

seq1  TTCAATGCAAATTATTCATACCTGAAAAAACAAATGCAGTCAAAGAAAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGCAAATTATTCATACCTGAAAAAACAAATGCAGTCAAAGAAAAT  731

seq1  GCACACAGCAGGTTTTCTTCATGTATTTGTGAATTATTTTTTATCCTTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGCAGGTTTTCTTCATGTATTTGTGAATTATTTTTTATCCTTAA  781

seq1  AAAGAAGATATTTGAACACGGTTGGGAATGCATAAAGAATAGAAAATGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGATATTTGAACACGGTTGGGAATGCATAAAGAATAGAAAATGAA  831

seq1  GTAGAAAATAATGCAATATTTTTACTTAACATATACAAAAGTACAATTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAATAATGCAATATTTTTACTTAACATATACAAAAGTACAATTTA  881

seq1  AATAAGCACCTTGCCATATAGACAGCCTAACAGTTAACATGAACTGGATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCACCTTGCCATATAGACAGCCTAACAGTTAACATGAACTGGATA  931

seq1  TTGTTACAGCAGACAGGGGTCCCGTTCCCCAAACTACTTGGTTGTTAACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACAGCAGACAGGGGTCCCGTTCCCCAAACTACTTGGTTGTTAACT  981

seq1  ATTATTGCCAAGTGTTTGCGGTTGTCTTCTGGTCTCAGAAAATACAGAGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGCCAAGTGTTTGCGGTTGTCTTCTGGTCTCAGAAAATACAGAGC  1031

seq1  CCAGACACATGCATGCAAAAAAAAAAAAAAAAACTACATATAAAATGTAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACACATGCATGCAAAAAAAAAAAAAAAAACTACATATAAAATGTAA  1081

seq1  AAAGTATAGCTCAAAAAACTGGAATTC  1125
      |||||||||||||||||||||||||||
seq2  AAAGTATAGCTCAAAAAACTGGAATTC  1108