BAC Information

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BAC

Clone NameB6Ng01-346B21
Chromosome13 (Build37)
Map Location 27,755,137 - 27,756,295
singlet/doubletsinglet
Overlap genePrl7a2
Upstream geneLOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1
Downstream geneRP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346B21.bB6Ng01-346B21.g
ACCGA128110GA128111
length1,142956
definitionB6Ng01-346B21.b B6Ng01-346B21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattacttacgtgggaacccagagaatgcctctttctgcaataaa
tatgcagtcatgatggcactttactcattaatttctgccactgccctcaa
cctggctcagctaaattcagcatcagaatcctattccaaatttgtaagta
tctcacttatttctattttctcttatttcaaaagccttcatgctaatggt
gtcactcaaacttacaagagaaagcattaaggaccaattgtcaagttaca
catccacaagtgtattttgatctttcattcagtattataatacaagaaag
cctctgatagtaaaaagtgaatggggaagcttgcaaagaatgatttgttc
aattttctataacttaatttactttttagtctaagattactattttgaac
tataagtgttaccattgtgactagagaagatctcctatatctgaatgtaa
ctttgaagaagacagaaaacactggcatttttcacttagttcactgcaga
tccccaagaaggctgaactgcattgtagtcagttgggtatagggaacaga
agcaatccaaatggagagcatatcaagagggaagcaaagcactaatttat
tttcaggaaccccagtgcttagattcctattacaactttccagtactgga
gttcattcagtagcaaggcttgttgccaagcaaaaatagacatcctcttc
ctgactacaaattatctatctgttcaaagtcagtcaacagaaaggagaaa
aatgtaaggcttcagtaaaactatgggcatcaagagaatgtgtctctgca
tttgctacagatgtgttatcattgacttttttcaaactggtttgtcattt
ctcattctctgctgaccctctttgaaattcttaacatttctgggaaccca
ttcaacttctacacagtagctgattatcagttttaaataacaagctattg
atagtatatttaaagtatatattaataaatgatctattgatcaaacataa
cattatattttgttgcttttatttcatgctactattcctatttcctaaaa
tgtcatttgctttctctgattttgtaaacattagcatgtcagtcagattt
atgattaacactattgtacagtgtttacagtttccttgtaac
gaattctgggtcttgtttatgtatccagtctgttagtttatgttttcttt
tttactgggaaattgagtcctttgatgttaagagatattaaggaaaagcg
ttacttcctgttatttttgttgttaggggtggaattatgtttgtgtggct
atcttcttttgggtttgttgagggattatttcttgctttttctagagtgc
cgtttccctccttgtgttggagttttcaatctattatcctttgtaggatg
ggtttgtggaaacatattatgtaaatttggctttgtcatgtaatacctag
gtttctccatctatggtaattgagagtttctctgggcataggagcctggg
caggcatttgtgttctcttagggtctgtatgatatctgcccagggtcttc
tcgcttttatactctggtgagaaggctggtgtaattctgataggtttgtt
tttatatgttacttgatctttttcccttattgcttttaatattctttctt
tgttttgtgcatttggtgttttggttattatgtgacaggagaaatttctt
ttctggttcagtctatttgaagttctgtaggcttcttgtatgttcatggg
catctctttttttagattagggaagttttcttctataattttgttcaaga
tacttactggccctttaagttgggaatcttcactctatttcactctcttc
catacctattatccttaggtttggtcatgtcattgtgttcttgatttctt
taaatgttttgtgttacgagcattttgcattttctttgactgttgtgtca
atgttttctgtggtgtcttctgcacctgagactctcttctttctcttgta
ttctgttggtgaagcttgcatctatgactcctgacctcttttctggtttt
tctatctccagtatagtctccctttgagattctttgttctgtcatgtcca
ttttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_27755137_27756295
seq2: B6Ng01-346B21.b_46_1187 (reverse)

seq1  GTTACAA-GAGAATGTAAACACCTGTACCATTAAGTGTTAATCATAAATC  49
      ||||||| || | |||||||| |||||| ||  |||||||||||||||| 
seq2  GTTACAAGGAAACTGTAAACA-CTGTACAAT--AGTGTTAATCATAAAT-  46

seq1  CTGACTGACAATGGCTAATGTTTTACAAAATCAGAGAAAGCAAATTGAAC  99
      ||||||||||   ||||||| ||||||||||||||||||||||||   ||
seq2  CTGACTGACA--TGCTAATG-TTTACAAAATCAGAGAAAGCAAAT--GAC  91

seq1  ATTTTTAGGAAATAGGAAATAGTAAGCAATGAAAATAAAAGCAACAAAAT  149
      | |||||||||||||| |||||| ||| ||| ||||||||||||||||||
seq2  A-TTTTAGGAAATAGG-AATAGT-AGC-ATG-AAATAAAAGCAACAAAAT  136

seq1  ATTAATGTTTATGTTTTGATCAATAGATCATTTATTAATATTATACTTTA  199
      | ||||| ||||| |||||||||||||||||||||||||| |||||||||
seq2  A-TAATG-TTATG-TTTGATCAATAGATCATTTATTAATA-TATACTTTA  182

seq1  AATATACTATCAATAGCTTGTTATTTAAAACTGATAATCAGCTACTGTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACTATCAATAGCTTGTTATTTAAAACTGATAATCAGCTACTGTGT  232

seq1  AGAAGTTGAATGGGTTCCCAGAAATGTTAAGAATTTCAAAGAGGGTCAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGAATGGGTTCCCAGAAATGTTAAGAATTTCAAAGAGGGTCAGC  282

seq1  AGAGAATGAGAAATGACAAACCAGTTTGAAAAAAGTCAATGATAACACAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGAGAAATGACAAACCAGTTTGAAAAAAGTCAATGATAACACAT  332

seq1  CTGTAGCAAATGCAGAGACACATTCTCTTGATGCCCATAGTTTTACTGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCAAATGCAGAGACACATTCTCTTGATGCCCATAGTTTTACTGAA  382

seq1  GCCTTACATTTTTCTCCTTTCTGTTGACTGACTTTGAACAGATAGATAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACATTTTTCTCCTTTCTGTTGACTGACTTTGAACAGATAGATAAT  432

seq1  TTGTAGTCAGGAAGAGGATGTCTATTTTTGCTTGGCAACAAGCCTTGCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTCAGGAAGAGGATGTCTATTTTTGCTTGGCAACAAGCCTTGCTA  482

seq1  CTGAATGAACTCCAGTACTGGAAAGTTGTAATAGGAATCTAAGCACTGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGAACTCCAGTACTGGAAAGTTGTAATAGGAATCTAAGCACTGGG  532

seq1  GTTCCTGAAAATAAATTAGTGCTTTGCTTCCCTCTTGATATGCTCTCCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGAAAATAAATTAGTGCTTTGCTTCCCTCTTGATATGCTCTCCAT  582

seq1  TTGGATTGCTTCTGTTCCCTATACCCAACTGACTACAATGCAGTTCAGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTGCTTCTGTTCCCTATACCCAACTGACTACAATGCAGTTCAGCC  632

seq1  TTCTTGGGGATCTGCAGTGAACTAAGTGAAAAATGCCAGTGTTTTCTGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGGGATCTGCAGTGAACTAAGTGAAAAATGCCAGTGTTTTCTGTC  682

seq1  TTCTTCAAAGTTACATTCAGATATAGGAGATCTTCTCTAGTCACAATGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAAAGTTACATTCAGATATAGGAGATCTTCTCTAGTCACAATGGT  732

seq1  AACACTTATAGTTCAAAATAGTAATCTTAGACTAAAAAGTAAATTAAGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTATAGTTCAAAATAGTAATCTTAGACTAAAAAGTAAATTAAGTT  782

seq1  ATAGAAAATTGAACAAATCATTCTTTGCAAGCTTCCCCATTCACTTTTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAATTGAACAAATCATTCTTTGCAAGCTTCCCCATTCACTTTTTA  832

seq1  CTATCAGAGGCTTTCTTGTATTATAATACTGAATGAAAGATCAAAATACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGAGGCTTTCTTGTATTATAATACTGAATGAAAGATCAAAATACA  882

seq1  CTTGTGGATGTGTAACTTGACAATTGGTCCTTAATGCTTTCTCTTGTAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGATGTGTAACTTGACAATTGGTCCTTAATGCTTTCTCTTGTAAG  932

seq1  TTTGAGTGACACCATTAGCATGAAGGCTTTTGAAATAAGAGAAAATAGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTGACACCATTAGCATGAAGGCTTTTGAAATAAGAGAAAATAGAA  982

seq1  ATAAGTGAGATACTTACAAATTTGGAATAGGATTCTGATGCTGAATTTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGAGATACTTACAAATTTGGAATAGGATTCTGATGCTGAATTTAG  1032

seq1  CTGAGCCAGGTTGAGGGCAGTGGCAGAAATTAATGAGTAAAGTGCCATCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCAGGTTGAGGGCAGTGGCAGAAATTAATGAGTAAAGTGCCATCA  1082

seq1  TGACTGCATATTTATTGCAGAAAGAGGCATTCTCTGGGTTCCCACGTAAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCATATTTATTGCAGAAAGAGGCATTCTCTGGGTTCCCACGTAAG  1132

seq1  TAATGAATTC  1159
      ||||||||||
seq2  TAATGAATTC  1142