BAC Information

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BAC

Clone NameB6Ng01-346M17
Chromosome13 (Build37)
Map Location 113,847,558 - 113,848,704
singlet/doubletsinglet
Overlap geneCdc20b
Upstream geneLOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik
Downstream geneGzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346M17.bB6Ng01-346M17.g
ACCGA128592GA128593
length1,1421,200
definitionB6Ng01-346M17.b B6Ng01-346M17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactatgtagttcaggcctcaaacttgccacaatccttccacctc
agccttccaagatgacaggtgtgagccagtgtgccaagctcagcgagctt
cctaagacacatgctcagtagtgccagcctcttcctgaggtactatggtt
ctgaggactgaaaagggacccaaatctttataaaactgaggaatttccca
cacaataacaagtgtcaaccccagaattacctgactgtggaacggggaga
ctcaggagtgtaggaagtcttttgtattcagtgtaattgaggaaatttgg
atattcattgttttagaggaatttcttgctgcaattaggaattcctggct
ctttctgagctcgaaattgacttgccagttgtttcttaataaaacagtgt
gtgaaaaattgaaaatctcaagcaacagattattaatcaaatggagttta
caggaaaaacccattctactttctcctttagctaatcctgagacacaatg
acacacgtggattctacccgcttgtctggacatggtccattttgtttcag
aagagcaaatccagaagatccttctgtccgtgtctgcagagacatctctt
tgcttccgtccctgtctgcagagacatctctttgcaaagaggctcatttg
cagcatgctgtgctctgggcatgaagctgtcatctcctgctttctgaggc
tggagacgctgacagcttccaagcatagctttgggtttttgtttgttcta
tctatccaccgatctatctatccatctatctatctatctctgtgtgtggg
ggggggatcacatgctatggtgcatatggaggtcaaaggacaactctgtg
gcgttgcttctctccttgcccctttgtgtgggttctagggattgaactca
gttgtcagctttcctggcaagaatctatccatggagccatcttgctggca
ttaaacattgcttttcctttgaagttctgaggcttagccttttctttata
tactctaaaaatagcacagtaataaaatgtttttaaaagaaagaagccaa
atcaaaacctttgagggacatttgtgtgttaccccccttcctcttctaaa
ccgactgtcttgtctgtatagttgagtctggcactgagtgcc
gaattctcatttaatttctagtatgtgtagcacctacacatagtcctgtc
agtttgtactacttacttgtgtgaagtggccttctcagtacagaagatta
taaaaccaaaccatctacaactctgaaaaatatgaaagatgctcatatta
aatatttagctaatattaaaatctttatgtgggaataaacaattgcatca
atctccttgatatgataattttctagtcttcaatgatcaaatcataagta
tgctaaatagttgttctaaaatcactttttgaaggttaatcgtcagggct
ggcgagatggctcagtggttaggatcactggctgctcttccagaggtcct
gagtttaatcccagaaaccacatggtggctcacaaccatctgtaatggga
tctgatgccctcttctggtgtgtctaaagacagctacagtgtactcacaa
acataaaatacaatttaaaaatgtatcatcagaaagcatttggttttata
ttcttactttaaaatctagtgttaaattttctccaacaaaaaaggggttg
catctttactttaaaaatgtttttatttggtggggtgcatgtatatgtgc
acgtgttacatgtaaatcttcccaccaaggccagcagaggaccagggatg
ccctggaactagaatcatatgctgttgggagccatccaaagtgggcgctg
tgcactgaactcaggcctctgcatgaacagtaagtgctcttaattgctga
gccatctctcaagccaggaaaacaaattctacagttcgatgattaccttg
ctctcaacctaataggataggcctatggtttccagcaactatgtgctttc
acctaaatctgagaagaaaatggaaaaaggactagctccaggtggaaagt
tcagaggatgggggacttaaagctgatgtgtggctcatgctatgactgtg
cagagtaaaatgcgtgaaaagcatatgctcattcggttcagcctctgtga
gctcctgtgactccaggttagctaacgttatttttcgcttaccattcatt
aagatttaataacgaatcaattcatctagaaaaatatttgatccagtcca
ggacttatcttgtgattaggaggtagatggtcttagatgctgtgctaacg
tcaagttacttcagattccgaagagaaaaaggggatgaggatcacctgag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_113847558_113848704
seq2: B6Ng01-346M17.b_44_1185

seq1  GAATTCACTATGTAGTTCAGGCCTCAAACTTGCCACAATCCTTCCACCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGTTCAGGCCTCAAACTTGCCACAATCCTTCCACCTC  50

seq1  AGCCTTCCAAGATGACAGGTGTGAGCCAGTGTGCCAAGCTCAGCGAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCCAAGATGACAGGTGTGAGCCAGTGTGCCAAGCTCAGCGAGCTT  100

seq1  CCTAAGACACATGCTCAGTAGTGCCAGCCTCTTCCTGAGGTACTATGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGACACATGCTCAGTAGTGCCAGCCTCTTCCTGAGGTACTATGGTT  150

seq1  CTGAGGACTGAAAAGGGACCCAAATCTTTATAAAACTGAGGAATTTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGACTGAAAAGGGACCCAAATCTTTATAAAACTGAGGAATTTCCCA  200

seq1  CACAATAACAAGTGTCAACCCCAGAATTACCTGACTGTGGAACGGGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAACAAGTGTCAACCCCAGAATTACCTGACTGTGGAACGGGGAGA  250

seq1  CTCAGGAGTGTAGGAAGTCTTTTGTATTCAGTGTAATTGAGGAAATTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGTGTAGGAAGTCTTTTGTATTCAGTGTAATTGAGGAAATTTGG  300

seq1  ATATTCATTGTTTTAGAGGAATTTCTTGCTGCAATTAGGAATTCCTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATTGTTTTAGAGGAATTTCTTGCTGCAATTAGGAATTCCTGGCT  350

seq1  CTTTCTGAGCTCGAAATTGACTTGCCAGTTGTTTCTTAATAAAACAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGAGCTCGAAATTGACTTGCCAGTTGTTTCTTAATAAAACAGTGT  400

seq1  GTGAAAAATTGAAAATCTCAAGCAACAGATTATTAATCAAATGGAGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAATTGAAAATCTCAAGCAACAGATTATTAATCAAATGGAGTTTA  450

seq1  CAGGAAAAACCCATTCTACTTTCTCCTTTAGCTAATCCTGAGACACAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAACCCATTCTACTTTCTCCTTTAGCTAATCCTGAGACACAATG  500

seq1  ACACACGTGGATTCTACCCGCTTGTCTGGACATGGTCCATTTTGTTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGTGGATTCTACCCGCTTGTCTGGACATGGTCCATTTTGTTTCAG  550

seq1  AAGAGCAAATCCAGAAGATCCTTCTGTCCGTGTCTGCAGAGACATCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAAATCCAGAAGATCCTTCTGTCCGTGTCTGCAGAGACATCTCTT  600

seq1  TGCTTCCGTCCCTGTCTGCAGAGACATCTCTTTGCAAAGAGGCTCATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCGTCCCTGTCTGCAGAGACATCTCTTTGCAAAGAGGCTCATTTG  650

seq1  CAGCATGCTGTGCTCTGGGCATGAAGCTGTCATCTCCTGCTTTCTGAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGCTGTGCTCTGGGCATGAAGCTGTCATCTCCTGCTTTCTGAGGC  700

seq1  TGGAGACGCTGACAGCTTCCAAGCATAGCTTTGGGTTTTTGTTTGTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACGCTGACAGCTTCCAAGCATAGCTTTGGGTTTTTGTTTGTTCTA  750

seq1  TCTATCCACCGATCTATCTATCCATCTATCTATCTATCTCTGTGTGT-GG  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTATCCACCGATCTATCTATCCATCTATCTATCTATCTCTGTGTGTGGG  800

seq1  GGGGGGATCACATGCTATGGTGCATATGGAGGTCAAAGGACAACTCTGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGATCACATGCTATGGTGCATATGGAGGTCAAAGGACAACTCTGTG  850

seq1  GCGTTGCTTCTCTCCTTGCCCCTTTGTGTGGGTTCTAGGGATTGAACTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGCTTCTCTCCTTGCCCCTTTGTGTGGGTTCTAGGGATTGAACTCA  900

seq1  GGTTGTCAGGCTTTCCTGGCAAGAATCTATCCATGGAGCCATCTTGCTGG  949
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  -GTTGTCA-GCTTTCCTGGCAAGAATCTATCCATGGAGCCATCTTGCTGG  948

seq1  CATTAAACATTGCTTTTCCTTTGAAGTTCTGAGGCTTAGCCTTTTCTTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAACATTGCTTTTCCTTTGAAGTTCTGAGGCTTAGCCTTTTCTTTA  998

seq1  TATACTTCTAAAAATAGCACAGTAATAAAATG-TTTTAAAAGAAAG-AGC  1047
      ||||| |||||||||||||||||||||||||| ||||||||||||| |||
seq2  TATAC-TCTAAAAATAGCACAGTAATAAAATGTTTTTAAAAGAAAGAAGC  1047

seq1  CAAATCAAAAACTTTGAGGGACATTTGTTGTG-TACCCCCCTCTCTCCTT  1096
      |||||||||| |||||||||||||||| |||| |||||||||  |||  |
seq2  CAAATCAAAACCTTTGAGGGACATTTG-TGTGTTACCCCCCTTCCTC--T  1094

seq1  CCTTAAACGACTGTC-TGTCTGTTATAGTTTGAGTCCTGGGCACTGAGTG  1145
       || || |||||||| |||||| ||||| |||||||   |||||||||||
seq2  TCTAAACCGACTGTCTTGTCTG-TATAG-TTGAGTC--TGGCACTGAGTG  1140

seq1  CC  1147
      ||
seq2  CC  1142