BAC Information

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BAC

Clone NameB6Ng01-346P06
Chromosome13 (Build37)
Map Location 47,143,770 - 47,260,066
singlet/doubletdoublet
Overlap geneAof1, Dek, LOC100039761, Ibrdc2
Upstream geneENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt
Downstream gene4931429P17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346P06.bB6Ng01-346P06.g
ACCGA128706GA128707
length1,1101,104
definitionB6Ng01-346P06.b B6Ng01-346P06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,258,945 - 47,260,066)(47,143,770 - 47,144,879)
sequence
gaattccattgcactggtcagcactacacaatcctggaatcacacaaagc
ccagggagaaacccagcttcctcgggcaaaagtgtctactgcagcagctg
catcggctggcccagaagcttcatcctctgcacagtcccgaccccagggg
tttgccacatgctgcaaccctaccgggagccttcctttcctggtttaccc
aagccatcctccacgtcctgccttttaatgtaagtggcacaactgccacc
accacctccctcgttctcctgaaaccacactctctttattctcaacatat
gtatccccacttggcaacacactgtatctgctgctgattggtgtctcctc
cacttcaggtccttagggggtcagcttcatgagggctgagtctccgcaag
gatctctgcagtgcccagaggagtggaccctcattgaatcaccatatgaa
tgaaactactgtgacctctggaattgaccatatttaacatcttcctttcg
aaaggattacatttatttttttaaaaaccaacattgtcgaaagaagagga
tgatgtaaaaacatcacagagattaaatccaggccccaggttttcaggct
aacgtgccagcaagttatctgtgcttcccacacctcagcctctgctctat
aaaaggttgattgccacagcatttaatccataaacatgccgcacaacctc
aattggcttaaatgagccttaaatggggattgagttggaaggaagtcctt
ggaaagtgttggagtgtgacgtccctgtggcttaatgcaaacccttggga
ggagtaaggtgtttttcttgaagctcccacgggaataccttgtaaagtta
agtggaatttaaagtggagaagaaacagtaaatttgatggaaggtctaaa
cttaaccacctctccatgctgagttgcccaagctttgtctcttttaagtt
tatgagcaaatctgtaacaaaccttcagagagcagtgcattgtgctgtgg
ctgtcaggagttaaatttgagagcccacagaagcaggaaaggttgtacat
agcatacacaacatgggagagcaaccatagccagaccacttgcgcggttg
aataagaatg
gaattcttagtttgtaaatgacttttaaaagattttatttatttatttat
ttatttatttatttatttatttatttttcgagacagggtttctctgtata
gccctggctgtcctggaactcactttgtagaccaggctggcctcgaactc
agaaatccgcctgcctctgcctcccgagtgccgggattaaaggcgtgcgc
caccatgcctggcatcttatgtatatgaacgttttgtctgaatgtatgta
ttatgtatgtgtgtgtaccacacagacacctagtgttttcggatatcaga
agagggcattttatctcctggagttggaatcacagtgctaagctgccgtg
tgggtgctgggaaccaaacctgagccttttataagagcagcaagtgctct
taattgccgagccagaccttcagtccccagggatgacttggatcgactgc
catattttcctttaagaaaagctcacgtggatgttgcgtatcattaaagt
gctgtttctagatcctctagtaagacagttgtctatacaagtggttgcac
agttgtactggctaaccctagtctgttgccaggatgcagcctctggagct
gtggctgtagctcagttggtggagtgtttgcctggcgtgcatatttgatc
ccagatgctaccaacacgatgacatttagagcttctactcacatgtgacc
tcagcagcagacctgttgccatcccccctcaccaccgccgccaagtgaaa
ccgtgacgttagtggcttcttccgtaggcaaagaagaaagcagtagagat
cccggatgaggatgaagatggttcgtcggagaagaagtaccggaaatgtg
aaaaggcaggctgtacggcggcgtaccctgtgtgctttgcaagcgcttct
gaaaggtctgtggcaggctaccttgggccgtgtgtgtctgcccggagctt
gtgccttgtgggaatggtaccctagtgtactcttctaaaacaaatgcaga
acggcagcttgctatcttgactgcttagtcactaacacatcagagcgtct
catatattctgtgctgttctagctagtggggagagatcatacccagccta
tctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_47258945_47260066
seq2: B6Ng01-346P06.b_47_1156 (reverse)

seq1  CATTCTTATTCAAACCGCCGCAGTTGGTCTGGGCTATGGTTTGGCTCT-C  49
      ||||||||||| ||||| ||||  |||||| ||||||||||  ||||| |
seq2  CATTCTTATTC-AACCG-CGCAAGTGGTCT-GGCTATGGTT--GCTCTCC  45

seq1  CATGTTGTGTATGCTATGTTACAACCTTTCCTTCCTTCTGTGGGGCTCTC  99
      |||||||||||||||||| |||||||||||| | ||||||| ||||||||
seq2  CATGTTGTGTATGCTATG-TACAACCTTTCC-TGCTTCTGT-GGGCTCTC  92

seq1  AAATTTTACTCCCTGACAGCCACAGCACAATGCACTGCTCTCTGAAGGTT  149
      |||||| ||| ||||||||||||||||||||||||||||||||||||| |
seq2  AAATTTAACT-CCTGACAGCCACAGCACAATGCACTGCTCTCTGAAGG-T  140

seq1  TTGTTACAGATTTGCTCAATAAAACTTAAAAGAGACAAAGCTTGGGCAAC  199
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  TTGTTACAGATTTGCTCA--TAAACTTAAAAGAGACAAAGCTTGGGCAAC  188

seq1  TCAGCATGGAGAGGTGGTTAAGTTTAGACCTTCCATCAAATTTTACTGTT  249
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCAGCATGGAGAGGTGGTTAAGTTTAGACCTTCCATCAAA-TTTACTGTT  237

seq1  TCTTCTCCACTTTAAATTCCACTTAACTTTACAAGGTATTCCCGTGGGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCACTTTAAATTCCACTTAACTTTACAAGGTATTCCCGTGGGAG  287

seq1  CTTCAAGAAAAACACCTTACTCCTCCCAAGGGTTTGCATTAAGCCACAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGAAAAACACCTTACTCCTCCCAAGGGTTTGCATTAAGCCACAGG  337

seq1  GACGTCACACTCCAACACTTTCCAAGGACTTCCTTCCAACTCAATCCCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCACACTCCAACACTTTCCAAGGACTTCCTTCCAACTCAATCCCCA  387

seq1  TTTAAGGCTCATTTAAGCCAATTGAGGTTGTGCGGCATGTTTATGGATTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGCTCATTTAAGCCAATTGAGGTTGTGCGGCATGTTTATGGATTA  437

seq1  AATGCTGTGGCAATCAACCTTTTATAGAGCAGAGGCTGAGGTGTGGGAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGTGGCAATCAACCTTTTATAGAGCAGAGGCTGAGGTGTGGGAAG  487

seq1  CACAGATAACTTGCTGGCACGTTAGCCTGAAAACCTGGGGCCTGGATTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATAACTTGCTGGCACGTTAGCCTGAAAACCTGGGGCCTGGATTTA  537

seq1  ATCTCTGTGATGTTTTTACATCATCCTCTTCTTTCGACAATGTTGGTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTGATGTTTTTACATCATCCTCTTCTTTCGACAATGTTGGTTTT  587

seq1  TAAAAAAATAAATGTAATCCTTTCGAAAGGAAGATGTTAAATATGGTCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATAAATGTAATCCTTTCGAAAGGAAGATGTTAAATATGGTCAA  637

seq1  TTCCAGAGGTCACAGTAGTTTCATTCATATGGTGATTCAATGAGGGTCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGGTCACAGTAGTTTCATTCATATGGTGATTCAATGAGGGTCCA  687

seq1  CTCCTCTGGGCACTGCAGAGATCCTTGCGGAGACTCAGCCCTCATGAAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGGGCACTGCAGAGATCCTTGCGGAGACTCAGCCCTCATGAAGC  737

seq1  TGACCCCCTAAGGACCTGAAGTGGAGGAGACACCAATCAGCAGCAGATAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCCTAAGGACCTGAAGTGGAGGAGACACCAATCAGCAGCAGATAC  787

seq1  AGTGTGTTGCCAAGTGGGGATACATATGTTGAGAATAAAGAGAGTGTGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTTGCCAAGTGGGGATACATATGTTGAGAATAAAGAGAGTGTGGT  837

seq1  TTCAGGAGAACGAGGGAGGTGGTGGTGGCAGTTGTGCCACTTACATTAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAGAACGAGGGAGGTGGTGGTGGCAGTTGTGCCACTTACATTAAA  887

seq1  AGGCAGGACGTGGAGGATGGCTTGGGTAAACCAGGAAAGGAAGGCTCCCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGACGTGGAGGATGGCTTGGGTAAACCAGGAAAGGAAGGCTCCCG  937

seq1  GTAGGGTTGCAGCATGTGGCAAACCCCTGGGGTCGGGACTGTGCAGAGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTTGCAGCATGTGGCAAACCCCTGGGGTCGGGACTGTGCAGAGGA  987

seq1  TGAAGCTTCTGGGCCAGCCGATGCAGCTGCTGCAGTAGACACTTTTGCCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTTCTGGGCCAGCCGATGCAGCTGCTGCAGTAGACACTTTTGCCC  1037

seq1  GAGGAAGCTGGGTTTCTCCCTGGGCTTTGTGTGATTCCAGGATTGTGTAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGCTGGGTTTCTCCCTGGGCTTTGTGTGATTCCAGGATTGTGTAG  1087

seq1  TGCTGACCAGTGCAATGGAATTC  1122
      |||||||||||||||||||||||
seq2  TGCTGACCAGTGCAATGGAATTC  1110

seq1: chr13_47143770_47144879
seq2: B6Ng01-346P06.g_68_1171

seq1  GAATTCTTAGTTTGTAAATGACTTTTAAAAGATTTTATTTATTTATTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTTTGTAAATGACTTTTAAAAGATTTTATTTATTTATTTAT  50

seq1  TTATTTATTTATTTATTTATTTATTTTTCGAGACAGGGTTTCTCTGTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTATTTATTTATTTATTTTTCGAGACAGGGTTTCTCTGTATA  100

seq1  GCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTC  150

seq1  AGAAATCCGCCTGCCTCTGCCTCCCGAGTGCCGGGATTAAAGGCGTGCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCGCCTGCCTCTGCCTCCCGAGTGCCGGGATTAAAGGCGTGCGC  200

seq1  CACCATGCCTGGCATCTTATGTATATGAACGTTTTGTCTGAATGTATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGCCTGGCATCTTATGTATATGAACGTTTTGTCTGAATGTATGTA  250

seq1  TTATGTATGTGTGTGTACCACACAGACACCTAGTGTTTTCGGATATCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTATGTGTGTGTACCACACAGACACCTAGTGTTTTCGGATATCAGA  300

seq1  AGAGGGCATTTTATCTCCTGGAGTTGGAATCACAGTGCTAAGCTGCCGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCATTTTATCTCCTGGAGTTGGAATCACAGTGCTAAGCTGCCGTG  350

seq1  TGGGTGCTGGGAACCAAACCTGAGCCTTTTATAAGAGCAGCAAGTGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTGGGAACCAAACCTGAGCCTTTTATAAGAGCAGCAAGTGCTCT  400

seq1  TAATTGCCGAGCCAGACCTTCAGTCCCCAGGGATGACTTGGATCGACTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCCGAGCCAGACCTTCAGTCCCCAGGGATGACTTGGATCGACTGC  450

seq1  CATATTTTCCTTTAAGAAAAGCTCACGTGGATGTTGCGTATCATTAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTCCTTTAAGAAAAGCTCACGTGGATGTTGCGTATCATTAAAGT  500

seq1  GCTGTTTCTAGATCCTCTAGTAAGACAGTTGTCTATACAAGTGGTTGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCTAGATCCTCTAGTAAGACAGTTGTCTATACAAGTGGTTGCAC  550

seq1  AGTTGTACTGGCTAACCCTAGTCTGTTGCCAGGATGCAGCCTCTGGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTACTGGCTAACCCTAGTCTGTTGCCAGGATGCAGCCTCTGGAGCT  600

seq1  GTGGCTGTAGCTCAGTTGGTGGAGTGTTTGCCTGGCGTGCATATTTGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTAGCTCAGTTGGTGGAGTGTTTGCCTGGCGTGCATATTTGATC  650

seq1  CCAGATGCTACCAACACGATGACATTTAGAGCTTCTACTCACATGTGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGCTACCAACACGATGACATTTAGAGCTTCTACTCACATGTGACC  700

seq1  TCAGCAGCAGACCTGTTGCCATCCCCCCTCACCACCGCCGCCAAGTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCAGACCTGTTGCCATCCCCCCTCACCACCGCCGCCAAGTGAAA  750

seq1  CCGTGACGTTAGTGGCTTCTTCCGTAGGCAAAGAAGAAAGCAGTAGAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGACGTTAGTGGCTTCTTCCGTAGGCAAAGAAGAAAGCAGTAGAGAT  800

seq1  CCCGGATGAGGATGAAGATGGTTCGTCGGAGAAGAAGTACCGGAAATGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGATGAGGATGAAGATGGTTCGTCGGAGAAGAAGTACCGGAAATGTG  850

seq1  AAAAGGCAGGCTGTACGGCGGCGTACCCTGTGTGCTTTGCAAGCGCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCAGGCTGTACGGCGGCGTACCCTGTGTGCTTTGCAAGCGCTTCT  900

seq1  GAAAGGTCTGTGGCAGGGCTACCTT-GGCCGTGTGTGTCTGCCCGGGAGC  949
      ||||||||||||||| ||||||||| |||||||||||||||||| |||||
seq2  GAAAGGTCTGTGGCA-GGCTACCTTGGGCCGTGTGTGTCTGCCC-GGAGC  948

seq1  TTGTGCCTTGTGGGAATGGTACCCTAGATGTTACTCTTCTAAAACCAAAT  999
      ||||||||||||||||||||||||||| || ||||||||||||| |||||
seq2  TTGTGCCTTGTGGGAATGGTACCCTAG-TG-TACTCTTCTAAAA-CAAAT  995

seq1  GCAGGAACCGCAGCCTGCTAATCCTGACTGCTTAGTCACT-ACACATCAG  1048
      ||| |||| ||||| |||| ||| |||||||||||||||| |||||||||
seq2  GCA-GAACGGCAGCTTGCT-ATCTTGACTGCTTAGTCACTAACACATCAG  1043

seq1  AGCGCCCTCCATATTCTGTGGCTGGTTCTAGCCTAGT-GGGAGAGATCAT  1097
      |||| |    ||||||||| ||| ||||||| ||||| ||||||||||||
seq2  AGCGTCTCATATATTCTGT-GCT-GTTCTAG-CTAGTGGGGAGAGATCAT  1090

seq1  ACCCAG-CTATCTT  1110
      |||||| |||||||
seq2  ACCCAGCCTATCTT  1104