BAC Information

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BAC

Clone NameB6Ng01-347B06
Chromosome13 (Build37)
Map Location 21,532,357 - 21,668,287
singlet/doubletdoublet
Overlap genePgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3
Downstream geneOlfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347B06.bB6Ng01-347B06.g
ACCGA128791GA128792
length9661,139
definitionB6Ng01-347B06.b B6Ng01-347B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,667,322 - 21,668,287)(21,532,357 - 21,533,504)
sequence
gaattccaagccatctagggctacacaaagaattcctgtcttttaaaaaa
aaaaaaaaaaagacccattaaaatgtaatgtactaagaacaataggttca
ttcacaaaaggaagaaattattaacacataatactgtctgaaactttgta
ttatgtctctataaatttgtgaatttataataatataggtgagtgtatat
tcacaagaagagaagtagtaagataaaatagtagtagtaagtataaaata
gaaaatagtaagtaaaatagataaaaaaaatcatagtaagataaagttta
tcattttcagaaattttatatattgctgtgaactcaatgggtaaataaaa
aatgaaggactgtgccttcaattccaataaataaaattaaatcctgtctt
cattatgccaaaagcttttgagatctgaaaacttttataggacctgtgac
ttgctagtttaattacaaaaaataatgttttcttagatgcagaaagctag
taagcataaagaatgtacccacctctccacaaataattttacacttaata
tatctctttggctcaaacatttaccatatatttagaacaaagagtacaat
aaaatagacatatctgtaaattacttagctctctagtatatgtgaaatat
tcttagggatcacctaccaagaaaacataacaccatgataaagttacaaa
attctgcttctttgtagaaaatttaaaactaaatcaattctcagatacaa
tattaaatgaaggagaattcagacatggggctccagagatggctcagcag
ttaagagccaggtttggttcccagtatccacatggcaggccacaattgtt
tgtaatttcagttgcaggggatccctcacccttctgtgagctcaaagaga
actacacttacatacaggcagacaatctctctctctctctctctctctct
ctctctctctctctct
gaattcagggtgacagttttttttcctgctctgtattggtctatccttcc
aatgtaaattcctactgacacaagacctgctctgtacctgcataatctat
cgtggctaccctcgaacctaaaataggaatgggaaaactgagccacacag
gtggcaaccgggtgtgcacctctgggtgcacgtactccgttctccagctt
ctattgcagatcactgcacagccacccctgctcctggcagacctctacat
aaactagaatcgcagcacgtacctgatacccaacaaagaccggacgaacg
taatagatgtacctgtagtgccttcgccagggctctaacctgcccagatc
tacgctaaaattatatacgccagcgcccagcagctaagggtgtctatttg
ctgcttaaaagtttagggaacgtgtgctacgaggacgtgaggatgtgccg
aagctcatgaaaaaagcctgcgaccagagccaagaggccagagcgccaca
gcctggcggttcttgctgttagtctccgagcccgcgacgatgaaggtcgg
cgggaaggagtccaaagggatgaaggacagggggcacttcctgcagacgg
agctgggcaccgagggggcacttcctgtagttggagctggagactcactg
gcaacttccggcaagcgttgtgctccttagaagcctggtgacaatctctg
gtgcaccggtggagccaggtcgtggttttcctgacccgcacctctcctgg
tagtttcgaagaaaccaaacacgcgctcatttccgtaaatcatttcaaca
acaacaacaacaaaaaaaaaaaaaaaaaaaccaaaaaaccctgtaggatg
tacctgagggagcgctcttgcttgacatactttactgggttcggtcccca
gcaccacaaaagaaaaattttcctagactgtctttccataaagacaaagc
tgagttggcctttacagggtcttgttgcggacagtcagttgggttaaata
cccaacaaaggccctaggtgagtatacagattttatatgcgtgcaaatcc
caaggtagcttgatcaagtacatatttacttcctgtgtattcgactggag
atctattgacacttggagctctcttgccttgtggtcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21667322_21668287
seq2: B6Ng01-347B06.b_51_1016 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGTCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGTCTGCC  50

seq1  TGTATGTAAGTGTAGTTCTCTTTGAGCTCACAGAAGGGTGAGGGATCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTAAGTGTAGTTCTCTTTGAGCTCACAGAAGGGTGAGGGATCCCC  100

seq1  TGCAACTGAAATTACAAACAATTGTGGCCTGCCATGTGGATACTGGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTGAAATTACAAACAATTGTGGCCTGCCATGTGGATACTGGGAAC  150

seq1  CAAACCTGGCTCTTAACTGCTGAGCCATCTCTGGAGCCCCATGTCTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTGGCTCTTAACTGCTGAGCCATCTCTGGAGCCCCATGTCTGAAT  200

seq1  TCTCCTTCATTTAATATTGTATCTGAGAATTGATTTAGTTTTAAATTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCATTTAATATTGTATCTGAGAATTGATTTAGTTTTAAATTTTC  250

seq1  TACAAAGAAGCAGAATTTTGTAACTTTATCATGGTGTTATGTTTTCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGAAGCAGAATTTTGTAACTTTATCATGGTGTTATGTTTTCTTGG  300

seq1  TAGGTGATCCCTAAGAATATTTCACATATACTAGAGAGCTAAGTAATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGATCCCTAAGAATATTTCACATATACTAGAGAGCTAAGTAATTTA  350

seq1  CAGATATGTCTATTTTATTGTACTCTTTGTTCTAAATATATGGTAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATGTCTATTTTATTGTACTCTTTGTTCTAAATATATGGTAAATGT  400

seq1  TTGAGCCAAAGAGATATATTAAGTGTAAAATTATTTGTGGAGAGGTGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCAAAGAGATATATTAAGTGTAAAATTATTTGTGGAGAGGTGGGT  450

seq1  ACATTCTTTATGCTTACTAGCTTTCTGCATCTAAGAAAACATTATTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTTATGCTTACTAGCTTTCTGCATCTAAGAAAACATTATTTTTT  500

seq1  GTAATTAAACTAGCAAGTCACAGGTCCTATAAAAGTTTTCAGATCTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAAACTAGCAAGTCACAGGTCCTATAAAAGTTTTCAGATCTCAAA  550

seq1  AGCTTTTGGCATAATGAAGACAGGATTTAATTTTATTTATTGGAATTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTGGCATAATGAAGACAGGATTTAATTTTATTTATTGGAATTGAA  600

seq1  GGCACAGTCCTTCATTTTTTATTTACCCATTGAGTTCACAGCAATATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGTCCTTCATTTTTTATTTACCCATTGAGTTCACAGCAATATATA  650

seq1  AAATTTCTGAAAATGATAAACTTTATCTTACTATGATTTTTTTTATCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTGAAAATGATAAACTTTATCTTACTATGATTTTTTTTATCTAT  700

seq1  TTTACTTACTATTTTCTATTTTATACTTACTACTACTATTTTATCTTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTACTATTTTCTATTTTATACTTACTACTACTATTTTATCTTACT  750

seq1  ACTTCTCTTCTTGTGAATATACACTCACCTATATTATTATAAATTCACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTTCTTGTGAATATACACTCACCTATATTATTATAAATTCACAA  800

seq1  ATTTATAGAGACATAATACAAAGTTTCAGACAGTATTATGTGTTAATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGAGACATAATACAAAGTTTCAGACAGTATTATGTGTTAATAAT  850

seq1  TTCTTCCTTTTGTGAATGAACCTATTGTTCTTAGTACATTACATTTTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTTTTGTGAATGAACCTATTGTTCTTAGTACATTACATTTTAAT  900

seq1  GGGTCTTTTTTTTTTTTTTTTTAAAAGACAGGAATTCTTTGTGTAGCCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTTTTTTTTTTTTTTTTAAAAGACAGGAATTCTTTGTGTAGCCCT  950

seq1  AGATGGCTTGGAATTC  966
      ||||||||||||||||
seq2  AGATGGCTTGGAATTC  966

seq1: chr13_21532357_21533504
seq2: B6Ng01-347B06.g_69_1207

seq1  GAATTCAGGGTGACAGTTTTTTTTCCTGCTCTGTATTGGTCTATCCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTGACAGTTTTTTTTCCTGCTCTGTATTGGTCTATCCTTCC  50

seq1  AATGTAAATTCCTACTGACACAAGACCTGCTCTGTACCTGCATAATCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAATTCCTACTGACACAAGACCTGCTCTGTACCTGCATAATCTAT  100

seq1  CGTGGCTACCCTCGAACCTAAAATAGGAATGGGAAAACTGAGCCACACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCTACCCTCGAACCTAAAATAGGAATGGGAAAACTGAGCCACACAG  150

seq1  GTGGCAACCGGGTGTGCACCTCTGGGTGCACGTACTCCGTTCTCCAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAACCGGGTGTGCACCTCTGGGTGCACGTACTCCGTTCTCCAGCTT  200

seq1  CTATTGCAGATCACTGCACAGCCACCCCTGCTCCTGGCAGACCTCTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCAGATCACTGCACAGCCACCCCTGCTCCTGGCAGACCTCTACAT  250

seq1  AAACTAGAATCGCAGCACGTACCTGATACCCAACAAAGACCGGACGAACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGAATCGCAGCACGTACCTGATACCCAACAAAGACCGGACGAACG  300

seq1  TAATAGATGTACCTGTAGTGCCTTCGCCAGGGCTCTAACCTGCCCAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGATGTACCTGTAGTGCCTTCGCCAGGGCTCTAACCTGCCCAGATC  350

seq1  TACGCTAAAATTATATACGCCAGCGCCCAGCAGCTAAGGGTGTCTATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCTAAAATTATATACGCCAGCGCCCAGCAGCTAAGGGTGTCTATTTG  400

seq1  CTGCTTAAAAGTTTAGGGAACGTGTGCTACGAGGACGTGAGGATGTGCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTAAAAGTTTAGGGAACGTGTGCTACGAGGACGTGAGGATGTGCCG  450

seq1  AAGCTCATGAAAAAAGCCTGCGACCAGAGCCAAGAGGCCAGAGCGCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATGAAAAAAGCCTGCGACCAGAGCCAAGAGGCCAGAGCGCCACA  500

seq1  GCCTGGCGGTTCTTGCTGTTAGTCTCCGAGCCCGCGACGATGAAGGTCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCGGTTCTTGCTGTTAGTCTCCGAGCCCGCGACGATGAAGGTCGG  550

seq1  CGGGAAGGAGTCCAAAGGGATGAAGGACAGGGGGCACTTCCTGCAGACGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAGGAGTCCAAAGGGATGAAGGACAGGGGGCACTTCCTGCAGACGG  600

seq1  AGCTGGGCACCGAGGGGGCACTTCCTGTAGTTGGAGCTGGAGACTCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGCACCGAGGGGGCACTTCCTGTAGTTGGAGCTGGAGACTCACTG  650

seq1  GCAACTTCCGGCAAGCGTTGTGCTCCTTAGAAGCCTGGTGACAATCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTCCGGCAAGCGTTGTGCTCCTTAGAAGCCTGGTGACAATCTCTG  700

seq1  GTGCACCGGTGGAGCCAGGTCGTGGTTTTCCTGACCCGCACCTCTCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCGGTGGAGCCAGGTCGTGGTTTTCCTGACCCGCACCTCTCCTGG  750

seq1  TAGTTTCGAAGAAACCAAACACGCGCTCATTTCCGTAAATCATTTCAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCGAAGAAACCAAACACGCGCTCATTTCCGTAAATCATTTCAACA  800

seq1  ACAACAACAACAAAAAAAAAAAAAAAAAAAACCAAAAAACCCTGTAGGAT  850
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAAC-AAAAAAAAAAAAAAAAAAACCAAAAAACCCTGTAGGAT  849

seq1  GTACCTGAGGGAGCGCTCTTGCTTGACATAC-TTACTGGGTTCGGTCCCC  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTACCTGAGGGAGCGCTCTTGCTTGACATACTTTACTGGGTTCGGTCCCC  899

seq1  AGCACCACAAAAGAAAAATTTTCCTAGACTGTC-TTCCATAAAGACAAAG  948
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGCACCACAAAAGAAAAATTTTCCTAGACTGTCTTTCCATAAAGACAAAG  949

seq1  CTGAGTTGGCCTTTACAGGGTCTTG-TGCGGACAGTCAGTTGGG-TAAAT  996
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  CTGAGTTGGCCTTTACAGGGTCTTGTTGCGGACAGTCAGTTGGGTTAAAT  999

seq1  ACCCAACAAAGCCCTAAGGTGAGTATACAGATTTTATATGCGTGCAAAAT  1046
      ||||||||||| ||  ||||||||||||||||||||||||||||||||  
seq2  ACCCAACAAAGGCCCTAGGTGAGTATACAGATTTTATATGCGTGCAAATC  1049

seq1  CCCAGGTAGCTTGAATTCAAAAGTTAACCATATTTACTTCCTGTGTATTC  1096
      || |||||||||||  ||  ||||    ||||||||||||||||||||||
seq2  CCAAGGTAGCTTGA--TC--AAGT---ACATATTTACTTCCTGTGTATTC  1092

seq1  GACTGGGAGATCATATGACAACTTGGAGCTCTCTTGCTTTGTGGGTCTCA  1146
      |||| |||||||   |||| ||||||||||||||||| ||||||   |||
seq2  GACT-GGAGATCTATTGAC-ACTTGGAGCTCTCTTGCCTTGTGG---TCA  1137

seq1  AG  1148
      ||
seq2  AG  1139