BAC Information

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BAC

Clone NameB6Ng01-348M20
Chromosome13 (Build37)
Map Location 95,433,420 - 95,537,454
singlet/doubletdoublet
Overlap genenone
Upstream geneBhmt2, Dmgdh, Arsb, Cycs-ps3, Lhfpl2, Scamp1, LOC435378, ENSMUSG00000042857, Ap3b1
Downstream geneTbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348M20.bB6Ng01-348M20.g
ACCGA129982GA129983
length1,0431,116
definitionB6Ng01-348M20.b B6Ng01-348M20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,536,406 - 95,537,454)(95,433,420 - 95,434,528)
sequence
gaattcacactgcaagtcgtcaccaacagtcacaagttgctggatactca
cagagctcattacctactccttagccctaactttgtttttgaggtctaag
gacacgaaagagtgaacatcaatcaatgggtttgatgtcatgctgggagt
tcatgaaggaaagagaaggagtaggttgcggaaggaaatgaaaggtagaa
atgagccaaaggagccaaaggatcttcaggcaggaagagccgggtgaatt
aggcgtgatcaatggcttttcaggtttggggagcgaggagtggagagtta
gcatgtataaataaatacaggactggtttgctctgctccacaagcttcca
gaagcatttctgttcacatctcataagcacaacttggttccatcattgca
ccaagctacaaagagggaatatggagcctctagccgggctacagggagcc
ccattaacagtccagagcatccctttgccagctatctatccttcctatca
cctagtattacactctcttggtcacctttctagattttgagactgccgat
gtaaagggaataatagataactatctattattctggagccattttgaatg
accctggccccggagaacatagatttagcttaccccaaattccttgttcc
agcgaggaggtggttgtgtgaagtttttatagttttacaaaagagagaaa
gtcataatcaaggcaaagtttaaagtacatcagtgggtacctcagagagg
caggtagaccaagatgggggctatcctataggcttaaggcacccatctga
tgccattccctgcttttggattggtagatgctagttacctgctaagtcag
tagggttttttgttctgttttgttttgtattttgggtttttcgagacagg
gtttcctctgtgtagccctggctgaccttggacttactttgtagaccaag
cttggcctcgaactcaaaatccgctgccttgccttcgagtgctgggatta
agtgagtccaccacgcctagcttagtcagtagttttatagggt
gaattcttttgatttctttttatttttttttaaagatttatttattctat
tttcatgagtacactgtagctgtcttcagacacaccagaagacggcattg
gatctcattataaatggttgtaagttaccatgtggttgctgggaattgaa
ctcaggacctctggttaagccatctctccagctccctcagtgagaattct
tatcccaaaagcaaatgacaaaaacatcaaatgtagacctctggtctaca
catacacacacgcttgcatgcacgtgcgcgcgcgcgcgcgcgcacacaca
cacacacacacacacacatttgcacttgcacatctatgtgtacacatgtt
cacacaggaagaaagagaaagaaagcaagagaaaggaagaaagaaaggaa
ttaagaaagagagagaaagagaaagagagaaagagagaaagagagaaagg
gagaaaggaaggaaggaaggaagaaaaagaaagaaagaaagaaagaaaga
aagaaagaaagagagaaagagagaaagaaagaaagaaagaaagagagaaa
gaactctgagattaacatgttaagtttaagtgcagacatgggattggaga
gatggtttagtggcaggagacatgcagcaaacagaatgcaggagacatgc
agcaaacagaatgcaggagacatgaagcagacagaagcaggaatctgttt
ttctcttgtccactgccaataaattgtcttcttctggaatgtccaggaca
ctttcagagcttctccaaagagaccatctgaccctctttccttgtggaaa
aacccaggctatagtgccatcatcctacaggtggccctggtcacatctac
tcaaaacatatttctcacaaatgaagaattagacatgatgcaaagctcag
ttaaaggtatgacttgtgctatgactgggggagatgggatcagcccaaca
aagtgctcgcagaggtgaaggacccagtttggacctccagcacacagaaa
aaggctagtagtaatggtggtcagcatttaatacagcatcaagagtgagg
gagtagactctctgagccaagggtgctagctagactgctgccttcaagtg
agctcttgggctcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_95536406_95537454
seq2: B6Ng01-348M20.b_49_1091 (reverse)

seq1  ACCCTATTAAAACCTACTGACTTAGCTGGGCGTGGTGGCACTCACCTTTA  50
      |||||||  ||| ||||||||| |||| |||||||||| ||||||  |||
seq2  ACCCTAT--AAAACTACTGACTAAGCTAGGCGTGGTGG-ACTCAC--TTA  45

seq1  ATCCCAGCACTCGGAAGGCAAAGGCAGGCGGATTTCTGAGTTCGAGGCC-  99
      |||||||||||| |||||| |||||| |||||||| ||||||||||||| 
seq2  ATCCCAGCACTC-GAAGGC-AAGGCA-GCGGATTT-TGAGTTCGAGGCCA  91

seq1  AGCCTGGTCTACAAAGTAAGTTCCAGGTCAGCCAGGGCTACACAGA-GAA  148
      ||| ||||||||||||||||| | |||||||||||||||||||||| |||
seq2  AGCTTGGTCTACAAAGTAAGTCCAAGGTCAGCCAGGGCTACACAGAGGAA  141

seq1  ACCCTGTCTCGAAAAA-CCAAAATACAAAACAAAACAGAACAAAAAACCC  197
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCGAAAAACCCAAAATACAAAACAAAACAGAACAAAAAACCC  191

seq1  TACTGACTTAGCAGGTAACTAGCATCTACCAATCCAAAAGCAGGGAATGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACTTAGCAGGTAACTAGCATCTACCAATCCAAAAGCAGGGAATGG  241

seq1  CATCAGATGGGTGCCTTAAGCCTATAGGATAGCCCCCATCTTGGTCTACC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATGGGTGCCTTAAGCCTATAGGATAGCCCCCATCTTGGTCTACC  291

seq1  TGCCTCTCTGAGGTACCCACTGATGTACTTTAAACTTTGCCTTGATTATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCTGAGGTACCCACTGATGTACTTTAAACTTTGCCTTGATTATG  341

seq1  ACTTTCTCTCTTTTGTAAAACTATAAAAACTTCACACAACCACCTCCTCG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCTCTTTTGTAAAACTATAAAAACTTCACACAACCACCTCCTCG  391

seq1  CTGGAACAAGGAATTTGGGGTAAGCTAAATCTATGTTCTCCGGGGCCAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACAAGGAATTTGGGGTAAGCTAAATCTATGTTCTCCGGGGCCAGG  441

seq1  GTCATTCAAAATGGCTCCAGAATAATAGATAGTTATCTATTATTCCCTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCAAAATGGCTCCAGAATAATAGATAGTTATCTATTATTCCCTTT  491

seq1  ACATCGGCAGTCTCAAAATCTAGAAAGGTGACCAAGAGAGTGTAATACTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGGCAGTCTCAAAATCTAGAAAGGTGACCAAGAGAGTGTAATACTA  541

seq1  GGTGATAGGAAGGATAGATAGCTGGCAAAGGGATGCTCTGGACTGTTAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATAGGAAGGATAGATAGCTGGCAAAGGGATGCTCTGGACTGTTAAT  591

seq1  GGGGCTCCCTGTAGCCCGGCTAGAGGCTCCATATTCCCTCTTTGTAGCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCCCTGTAGCCCGGCTAGAGGCTCCATATTCCCTCTTTGTAGCTT  641

seq1  GGTGCAATGATGGAACCAAGTTGTGCTTATGAGATGTGAACAGAAATGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAATGATGGAACCAAGTTGTGCTTATGAGATGTGAACAGAAATGCT  691

seq1  TCTGGAAGCTTGTGGAGCAGAGCAAACCAGTCCTGTATTTATTTATACAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGCTTGTGGAGCAGAGCAAACCAGTCCTGTATTTATTTATACAT  741

seq1  GCTAACTCTCCACTCCTCGCTCCCCAAACCTGAAAAGCCATTGATCACGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTCTCCACTCCTCGCTCCCCAAACCTGAAAAGCCATTGATCACGC  791

seq1  CTAATTCACCCGGCTCTTCCTGCCTGAAGATCCTTTGGCTCCTTTGGCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCACCCGGCTCTTCCTGCCTGAAGATCCTTTGGCTCCTTTGGCTC  841

seq1  ATTTCTACCTTTCATTTCCTTCCGCAACCTACTCCTTCTCTTTCCTTCAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTACCTTTCATTTCCTTCCGCAACCTACTCCTTCTCTTTCCTTCAT  891

seq1  GAACTCCCAGCATGACATCAAACCCATTGATTGATGTTCACTCTTTCGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCCAGCATGACATCAAACCCATTGATTGATGTTCACTCTTTCGTG  941

seq1  TCCTTAGACCTCAAAAACAAAGTTAGGGCTAAGGAGTAGGTAATGAGCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGACCTCAAAAACAAAGTTAGGGCTAAGGAGTAGGTAATGAGCTC  991

seq1  TGTGAGTATCCAGCAACTTGTGACTGTTGGTGACGACTTGCAGTGTGAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTATCCAGCAACTTGTGACTGTTGGTGACGACTTGCAGTGTGAAT  1041

seq1  TC  1049
      ||
seq2  TC  1043

seq1: chr13_95433420_95434528
seq2: B6Ng01-348M20.g_66_1181

seq1  GAATTCTTTTGATTTCTTTTTATTTTTTTTTAAAGATTTATTTATTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGATTTCTTTTTATTTTTTTTTAAAGATTTATTTATTCTAT  50

seq1  TTTCATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGACGGCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGACGGCATTG  100

seq1  GATCTCATTATAAATGGTTGTAAGTTACCATGTGGTTGCTGGGAATTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCATTATAAATGGTTGTAAGTTACCATGTGGTTGCTGGGAATTGAA  150

seq1  CTCAGGACCTCTGGTTAAGCCATCTCTCCAGCTCCCTCAGTGAGAATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACCTCTGGTTAAGCCATCTCTCCAGCTCCCTCAGTGAGAATTCT  200

seq1  TATCCCAAAAGCAAATGACAAAAACATCAAATGTAGACCTCTGGTCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAAAAGCAAATGACAAAAACATCAAATGTAGACCTCTGGTCTACA  250

seq1  CATACACACACGCTTGCATGCACGTGCGCGCGCGCGCGCGCGCACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACACACGCTTGCATGCACGTGCGCGCGCGCGCGCGCGCACACACA  300

seq1  CACACACACACACACACATTTGCACTTGCACATCTATGTGTACACATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACATTTGCACTTGCACATCTATGTGTACACATGTT  350

seq1  CACACAGGAAGAAAGAGAAAGAAAGCAAGAGAAAGGAAGAAAGAAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGAAGAAAGAGAAAGAAAGCAAGAGAAAGGAAGAAAGAAAGGAA  400

seq1  TTAAGAAAGAGAGAGAAAGAGAAAGAGAGAAAGAGAGAAAGAGAGAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAGAGAGAGAAAGAGAAAGAGAGAAAGAGAGAAAGAGAGAAAGG  450

seq1  GAGAAAGGAAGGAAGGAAGGAAGAAAAAGAAAGAAAGAAAGAAAGAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGAAGGAAGGAAGGAAGAAAAAGAAAGAAAGAAAGAAAGAAAGA  500

seq1  AAGAAAGAAAGAGAGAAAGAGAGAAAGAAAGAAAGAAAGAAAGAGAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAGAGAAAGAGAGAAAGAAAGAAAGAAAGAAAGAGAGAAA  550

seq1  GAACTCTGAGATTAACATGTTAAGTTTAAGTGCAGACATGGGATTGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTGAGATTAACATGTTAAGTTTAAGTGCAGACATGGGATTGGAGA  600

seq1  GATGGTTTAGTGGCAGGAGACATGCAGCAAACAGAATGCAGGAGACATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTAGTGGCAGGAGACATGCAGCAAACAGAATGCAGGAGACATGC  650

seq1  AGCAAACAGAATGCAGGAGACATGAAGCAGACAGAAGCAGGAATCTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACAGAATGCAGGAGACATGAAGCAGACAGAAGCAGGAATCTGTTT  700

seq1  TTCTCTTGTCCACTGCCAATAAATTGTCTTCTTCTGGAATGTCCAGGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGTCCACTGCCAATAAATTGTCTTCTTCTGGAATGTCCAGGACA  750

seq1  CTTTCAGAGCTTCTCCAAAGAGACCATCTGACC--CCTTCCTTGTGGAAA  798
      |||||||||||||||||||||||||||||||||  | |||||||||||||
seq2  CTTTCAGAGCTTCTCCAAAGAGACCATCTGACCCTCTTTCCTTGTGGAAA  800

seq1  AACCCAGGCTATAGTGCCATCATCCTACAGGTGGCCCTGGTCACATCTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGGCTATAGTGCCATCATCCTACAGGTGGCCCTGGTCACATCTAC  850

seq1  TCAAAACATATTTCTCACAAATGAAGAATTAGACATGATGCAAAGCTCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACATATTTCTCACAAATGAAGAATTAGACATGATGCAAAGCTCAG  900

seq1  TT-AAGGTATGACTTGTGCTATGACT-GGGGAGAT-GGATCAG-CCAACA  944
      || ||||||||||||||||||||||| |||||||| ||||||| ||||||
seq2  TTAAAGGTATGACTTGTGCTATGACTGGGGGAGATGGGATCAGCCCAACA  950

seq1  AAGTGCTCGCAGAGGTG-AGGACCCAGTTTGGACCTCCAGCACACAG-AA  992
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  AAGTGCTCGCAGAGGTGAAGGACCCAGTTTGGACCTCCAGCACACAGAAA  1000

seq1  AAGGCTAGGTAGGTATGGTGGTCAGCATTTAATACCAGCATCAGGAAGTG  1042
      ||||||| ||||  |||||||||||||||||||| |||||||| | ||||
seq2  AAGGCTA-GTAGTAATGGTGGTCAGCATTTAATA-CAGCATCAAG-AGTG  1047

seq1  AGGGAAGTAGACCCCCTGAG-CAAGGTGGCTAGCTAGACTTGCTGCCT--  1089
      |||| ||||||| | ||||| |||||  ||||||||||| ||||||||  
seq2  AGGG-AGTAGACTCTCTGAGCCAAGGGTGCTAGCTAGAC-TGCTGCCTTC  1095

seq1  CAGTGAGCTC-TGGGCTCAGC  1109
       ||||||||| ||||||||||
seq2  AAGTGAGCTCTTGGGCTCAGC  1116