BAC Information

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BAC

Clone NameB6Ng01-349G04
Chromosome13 (Build37)
Map Location 64,202,173 - 64,366,496
singlet/doubletdoublet
Overlap geneSlc35d2, Zfp367, Habp4, Cdc14b
Upstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3
Downstream gene1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349G04.bB6Ng01-349G04.g
ACCGA130394GA130395
length1,2161,094
definitionB6Ng01-349G04.b B6Ng01-349G04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,365,266 - 64,366,496)(64,202,173 - 64,203,259)
sequence
gaattcagtgccctcttggcttcgtttagaacctgtacacatttgatatg
cacacatagacacacaattaaaaagtagaaataaatcttaaaagctggtt
ttaaccttcccaaagtagaatatatatattctaaagattttaaacttaca
tttatttagtgtgtatgtttgtgtgtgagaaagaaagagagactctgtgt
gtgtctgtgtgaacaagcatagatgctggcgaattggttttcttatttca
caatgtgtgtcccagctatcgaactcagttttttgggcttggtggcaagt
ttctacaagttatgccatcttgctggcccttaaagtcaaggctcttgacg
tgtgatacgtacaactcatttgggccctgttttgtagaggttttatgccc
cgcccccttttaaagcaacttttcatgaatattgctccatcaaaggtagt
caggtccttgactcctttatggttctttctgatacttgtaaatagtaaaa
tctaatctgtgagttgtgagtctcggttgtgtctatttctgcttgtcctt
ggtttggtttgaggtgacagcagctctgactatagatcaccttcttcaca
actgaagctgaaactgcccttcctgtgaaaagaggagttgatctctgtat
atgcgtaataccaaatgtgatttccgggtatttttttgttatgaatgtta
aatgatgaatgcttttggtagtaccaaatttgtcttttaaaattgaagta
ccttttaaaatggtgctttctgaaataatatttacaattaactgatgtaa
gagttattctttttggtttgtttgttttgagagagggtctttaaaataat
agtttctttctgtttgggcatttctgtgcctacctggcaggtttatgtaa
ttttttaattctgtgaagcacaagggaaatttcatgaaatgctagtttca
attgggtctctgggaagggctttatgttctgttttggattcagacaagga
atcaagctgtgtgctaaggatgggacccaggagggcctctttgtatgatt
gtcaagcttctctgcaaaaactaacagtcttagtccacttttttttttag
tattctaatttattttgatttccagttaaataagggatacagtggtccca
cattaacagtttccatagtatctcccttctctatggggatgtatggccgt
atgaaggcactctatg
gaattccatacgtggtatcttagggttactatttctgtgatgaaacagca
caaccaaagaaacttagggagggaaggacgactcagcttaggcctccacg
gcactcacctgttcatcatggaggaagtcaggacagggcaagaacctaga
gacagaagccatggaggcatactgcttactggcttgctccccatggcttg
ctcagcctgctttcttatagaacaacaggccagggatggccccacctgca
ataggcttggccttcccacatcaaccactaattaagaagatgtcccatag
ccagatcttatggaagcattttctcagttgaggttccctccattcagata
actttagcttgtatcgagttgacataaaactatcccccacacatgggaaa
tctcatcacttggtttctgtttgtatttatttatttatatatttttgagt
tccatgcaacacatgccagcacatagttgagtgcagtacccacctttaga
caataaaaaccaatttacacatctgctactgaatgtaatggtactgtggc
agtcagtcttgtccacatgactaaacttaggatcaccatggaaaaattct
actgggcatagctgggagggagtttccagaaaagtttaactgaagaggga
agacccacccaaacagaagcagcacaatcccaccgccttccatcccagac
ggaatgaaaaagcaacagtaagctgggtatcagcattcacctctctctgc
ttcactgcggatacaaagtgtcagctgcctctctcctgccaccttccctg
ccaaacggacttgcactctcagtgagccaaagtgaatcctgaagttgctt
tgtcacagtgagggaaaaaagcaactaacataaggttaccacgcatgttt
catctttgatttccaggctcatgccaacagtcacaggtaggtcacttgaa
accagaacctccctcctcggaggtattagccttttcatgttctcccactt
ctgacctggagctgggcataaactctctgactgatctcgtctggtaaatg
accattaagaagccctgtttcttgaaagcaggatccaacgactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64365266_64366496
seq2: B6Ng01-349G04.b_48_1263 (reverse)

seq1  CATAGAGTGCACTTCCATACAGGCAAAACATACACACAGAGAGAGAGAGA  50
      |||||||||| ||| ||||| ||| | |||| | || |||||       |
seq2  CATAGAGTGC-CTT-CATAC-GGCCATACATCCCCATAGAGA-------A  40

seq1  GAGAGAATAATTATTGAAACATGTTATATGGTTGGGACCACTGGTTCCCT  100
      | ||||   | ||| ||||| ||||| |||  |||||||||||  |||||
seq2  GGGAGA--TACTATGGAAAC-TGTTA-ATG--TGGGACCACTGTATCCCT  84

seq1  TATTTAACTTGAAAATCAAAATAAATTAGAATACTTAAAAAAAAAAGT-G  149
      |||||||| || |||||||||||||||||||||| ||||||||||||| |
seq2  TATTTAAC-TGGAAATCAAAATAAATTAGAATAC-TAAAAAAAAAAGTGG  132

seq1  ACTAAGACTG-TAGTTTTGCGAGAG-AGCTTGACAATCATAC-AAGAGGC  196
      |||||||||| |||||||   |||| |||||||||||||||| |||||||
seq2  ACTAAGACTGTTAGTTTTTGCAGAGAAGCTTGACAATCATACAAAGAGGC  182

seq1  CCTCCTGGGTCCCATCCCTAGCACACAGCTTGATTTCCTGTCTGAATCCA  246
      ||||||||||||||||| ||||||||||||||||| | ||||||||||||
seq2  CCTCCTGGGTCCCATCCTTAGCACACAGCTTGATTCCTTGTCTGAATCCA  232

seq1  AAACAGAACATAAAAGCCCTTCCCAGAGACCCAATTGAAACTAGCATTTC  296
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAACAT-AAAGCCCTTCCCAGAGACCCAATTGAAACTAGCATTTC  281

seq1  ATGAAATTTCCCTTGTGCTTCACAGAATTAAAAAATTACATAAACCTGCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTTCCCTTGTGCTTCACAGAATTAAAAAATTACATAAACCTGCC  331

seq1  AGGTAGGCACAGAAATGCCCAAACAGAAAGAAACTATTATTTTAAAGACC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGCACAGAAATGCCCAAACAGAAAGAAACTATTATTTTAAAGACC  381

seq1  CTCTCTCAAAACAAACAAACCAAAAAGAATAACTCTTACATCAGTTAATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCAAAACAAACAAACCAAAAAGAATAACTCTTACATCAGTTAATT  431

seq1  GTAAATATTATTTCAGAAAGCACCATTTTAAAAGGTACTTCAATTTTAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATTATTTCAGAAAGCACCATTTTAAAAGGTACTTCAATTTTAAA  481

seq1  AGACAAATTTGGTACTACCAAAAGCATTCATCATTTAACATTCATAACAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAATTTGGTACTACCAAAAGCATTCATCATTTAACATTCATAACAA  531

seq1  AAAAATACCCGGAAATCACATTTGGTATTACGCATATACAGAGATCAACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACCCGGAAATCACATTTGGTATTACGCATATACAGAGATCAACT  581

seq1  CCTCTTTTCACAGGAAGGGCAGTTTCAGCTTCAGTTGTGAAGAAGGTGAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTCACAGGAAGGGCAGTTTCAGCTTCAGTTGTGAAGAAGGTGAT  631

seq1  CTATAGTCAGAGCTGCTGTCACCTCAAACCAAACCAAGGACAAGCAGAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTCAGAGCTGCTGTCACCTCAAACCAAACCAAGGACAAGCAGAAA  681

seq1  TAGACACAACCGAGACTCACAACTCACAGATTAGATTTTACTATTTACAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACAACCGAGACTCACAACTCACAGATTAGATTTTACTATTTACAA  731

seq1  GTATCAGAAAGAACCATAAAGGAGTCAAGGACCTGACTACCTTTGATGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGAAAGAACCATAAAGGAGTCAAGGACCTGACTACCTTTGATGGA  781

seq1  GCAATATTCATGAAAAGTTGCTTTAAAAGGGGGCGGGGCATAAAACCTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATTCATGAAAAGTTGCTTTAAAAGGGGGCGGGGCATAAAACCTCT  831

seq1  ACAAAACAGGGCCCAAATGAGTTGTACGTATCACACGTCAAGAGCCTTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAGGGCCCAAATGAGTTGTACGTATCACACGTCAAGAGCCTTGA  881

seq1  CTTTAAGGGCCAGCAAGATGGCATAACTTGTAGAAACTTGCCACCAAGCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGGGCCAGCAAGATGGCATAACTTGTAGAAACTTGCCACCAAGCC  931

seq1  CAAAAAACTGAGTTCGATAGCTGGGACACACATTGTGAAATAAGAAAACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACTGAGTTCGATAGCTGGGACACACATTGTGAAATAAGAAAACC  981

seq1  AATTCGCCAGCATCTATGCTTGTTCACACAGACACACACAGAGTCTCTCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCGCCAGCATCTATGCTTGTTCACACAGACACACACAGAGTCTCTCT  1031

seq1  TTCTTTCTCACACACAAACATACACACTAAATAAATGTAAGTTTAAAATC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTCACACACAAACATACACACTAAATAAATGTAAGTTTAAAATC  1081

seq1  TTTAGAATATATATATTCTACTTTGGGAAGGTTAAAACCAGCTTTTAAGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATATATATATTCTACTTTGGGAAGGTTAAAACCAGCTTTTAAGA  1131

seq1  TTTATTTCTACTTTTTAATTGTGTGTCTATGTGTGCATATCAAATGTGTA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTACTTTTTAATTGTGTGTCTATGTGTGCATATCAAATGTGTA  1181

seq1  CAGGTTCTAAACGAAGCCAAGAGGGCACTGAATTC  1231
      |||||||||||||||||||||||||||||||||||
seq2  CAGGTTCTAAACGAAGCCAAGAGGGCACTGAATTC  1216

seq1: chr13_64202173_64203259
seq2: B6Ng01-349G04.g_67_1160

seq1  GAATTCCATACGTGGTATCTTAGGGTTACTATTTCTGTGATGAAACAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACGTGGTATCTTAGGGTTACTATTTCTGTGATGAAACAGCA  50

seq1  CAACCAAAGAAACTTAGGGAGGGAAGGACGACTCAGCTTAGGCCTCCACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAAGAAACTTAGGGAGGGAAGGACGACTCAGCTTAGGCCTCCACG  100

seq1  GCACTCACCTGTTCATCATGGAGGAAGTCAGGACAGGGCAAGAACCTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCACCTGTTCATCATGGAGGAAGTCAGGACAGGGCAAGAACCTAGA  150

seq1  GACAGAAGCCATGGAGGCATACTGCTTACTGGCTTGCTCCCCATGGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGCCATGGAGGCATACTGCTTACTGGCTTGCTCCCCATGGCTTG  200

seq1  CTCAGCCTGCTTTCTTATAGAACAACAGGCCAGGGATGGCCCCACCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCTGCTTTCTTATAGAACAACAGGCCAGGGATGGCCCCACCTGCA  250

seq1  ATAGGCTTGGCCTTCCCACATCAACCACTAATTAAGAAGATGTCCCATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTTGGCCTTCCCACATCAACCACTAATTAAGAAGATGTCCCATAG  300

seq1  CCAGATCTTATGGAAGCATTTTCTCAGTTGAGGTTCCCTCCATTCAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCTTATGGAAGCATTTTCTCAGTTGAGGTTCCCTCCATTCAGATA  350

seq1  ACTTTAGCTTGTATCGAGTTGACATAAAACTATCCCCCACACATGGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGCTTGTATCGAGTTGACATAAAACTATCCCCCACACATGGGAAA  400

seq1  TCTCATCACTTGGTTTCTGTTTGTATTTATTTATTTATATATTTTTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCACTTGGTTTCTGTTTGTATTTATTTATTTATATATTTTTGAGT  450

seq1  TCCATGCAACACATGCCAGCACATAGTTGAGTGCAGTACCCACCTTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCAACACATGCCAGCACATAGTTGAGTGCAGTACCCACCTTTAGA  500

seq1  CAATAAAAACCAATTTACACATCTGCTACTGAATGTAATGGTACTGTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAACCAATTTACACATCTGCTACTGAATGTAATGGTACTGTGGC  550

seq1  AGTCAGTCTTGTCCACATGACTAAACTTAGGATCACCATGGAAAAATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTCTTGTCCACATGACTAAACTTAGGATCACCATGGAAAAATTCT  600

seq1  ACTGGGCATAGCTGGGAGGGAGTTTCCAGAAAAGTTTAACTGAAGAGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCATAGCTGGGAGGGAGTTTCCAGAAAAGTTTAACTGAAGAGGGA  650

seq1  AGACCCACCCAAACAGAAGCAGCACAATCCCACCGCCTTCCATCCCAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCACCCAAACAGAAGCAGCACAATCCCACCGCCTTCCATCCCAGAC  700

seq1  GGAATGAAAAAGCAACAGTAAGCTGGGTATCAGCATTCACCTCTCTCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAAAAAGCAACAGTAAGCTGGGTATCAGCATTCACCTCTCTCTGC  750

seq1  TTCACTGCGGATACAAAGTGTCAGCTGCCTCTCTCCTGCCACCTTCCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGCGGATACAAAGTGTCAGCTGCCTCTCTCCTGCCACCTTCCCTG  800

seq1  CCAAACGGAC-TGCACTCTCAGTGAGCCAAAGTGAATCCTGAAGTTGCTT  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCAAACGGACTTGCACTCTCAGTGAGCCAAAGTGAATCCTGAAGTTGCTT  850

seq1  TGTCACAGTGAGGGAAAAAAGCAACTAACATAAGGTTACCACGCATGTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGTGAGGGAAAAAAGCAACTAACATAAGGTTACCACGCATGTTT  900

seq1  CATCTTGGA-TTCCAGGCTCATGCCCACAGTCACAGGTAGGTCAC-TGAA  947
      |||||| || ||||||||||||||| ||||||||||||||||||| ||||
seq2  CATCTTTGATTTCCAGGCTCATGCCAACAGTCACAGGTAGGTCACTTGAA  950

seq1  ACCAGAACCT-CCTCCTCGGAGGTA-TAGCC-TTTCATGTTTCTCCCACT  994
      |||||||||| |||||||||||||| ||||| ||||||| ||||||||||
seq2  ACCAGAACCTCCCTCCTCGGAGGTATTAGCCTTTTCATG-TTCTCCCACT  999

seq1  TCTGACCTGGAGCTGGCCATAAACTCTCTGACTGATCTCGTCTTGTAAAT  1044
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  TCTGACCTGGAGCTGGGCATAAACTCTCTGACTGATCTCGTCTGGTAAAT  1049

seq1  GACCA-TAAG-AGCCCTGTTTCTGAAAGGCAGGATCCAACGACTT  1087
      ||||| |||| ||||||||||||  || |||||||||||||||||
seq2  GACCATTAAGAAGCCCTGTTTCTTGAAAGCAGGATCCAACGACTT  1094