BAC Information

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BAC

Clone NameB6Ng01-349I07
Chromosome12 (Build37)13 (Build37)
Map Location 78,131,421 - 78,132,42574,918,031 - 74,918,670
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSyne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max
Downstream geneLOC100041765, LOC100041772, Fut8, LOC230765, LOC666659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349I07.bB6Ng01-349I07.g
ACCGA130488GA130489
length1,001963
definitionB6Ng01-349I07.b B6Ng01-349I07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(78,131,421 - 78,132,425)(74,918,031 - 74,918,670)
sequence
gaattcaatagtgaccaagcatggccatgcatgtccataatcccaactct
tgggaggcagaggcaggagcgaccctataagtttaagatcatctgaggtc
catggtgagttccagccagccagggacatgggaaacctggcccccaaacc
agaattcaattagatgtcttcattgtggcagctaaaaagaccaactgtga
ggcgtagagggtggagtggagggtgacgtctgggctcggctatcagcact
gacagggatatagagcacaggccattgtctggaaatcttaaaaaacaaat
tcctctttgtttgtcagtatttacctcagcactgacgtgggaacccaggc
cctctgtctctctaaatcacccttaggctggaaatggcagccatttccag
ccccgagcctccttcctatgagctccttccacaaaactagagcttgggtt
gttgttgttgtttgtttgtttgtttttaatgataaatggaatttttcttc
aagtaaatgagactcagggttctccactttcctatctgctaacagggacc
agaaacaacactctgtgttatccagtcatccctcaaggtccatagccatc
ccttggggacacacagatctccaaatcaaaagatctttaggtccctatat
aacaggtcataggatttgtctgtaaactgtatacatcccctgtgtgcttt
aagtcaactctgggttatttgtaatacttaatgcacagcaaatgctctat
aagtagctgctgtgcatactatagggaataatgataagagataagtatat
atcaactaacaagaccacccagagctcccagggactaaaccaccaaccaa
agagtatacatggagggacccatgggtccagatacatatgtatcagagga
tggccttgtcggaacatcaatgggaagggagtccttggtcctatggaagc
tgatgctcagcatatgggaatgctagagcatgagaaggagtgggtggtgg
g
gaattcttcgccagcaacatgcatgtattggttcaccttacaagatgtag
ttgagctccatttgtcaggactccctagagagaaaggcaccaaaaaattt
cagtggtttaatttcagtgttttttttgtttgtttgtttgttttgttttg
ttttttcccgagacagggtttctctgtgtagctctggctgtcctggaact
cattctgtagaccaggccagcctcaaactcagaaatcctcctgcctctgc
ctcccaagtgctgggattaaaggcatgcgccacactgcccagaaacaaaa
aatttctggtggtgtgctgtagcttcttgccaactctataatctcaggct
gattgacagagtgatgtcaactaatacagactcatgtagagctttgctaa
gtcagactcacatcctaaggcaagacacatggaagacatgtgatgtttgg
aaggagtataactaggactcaatggactgtgagaggagcttccttataga
gctagctctccaactcttttttggtctcaaagctaatctttgcttcactg
agaaaggcatagcaaaaaaacttctcctggcatccctgctggtccaaatc
ccttctgccgacttctgctgattctgctgaggcctggctgttcctgctag
gtggtgccacctctgctgctatcctaacaccactgaactgtactgctggt
atatcccagaagtgtttgtgagtggctcaagctgctgctgctgctgctga
cctgtgaagtgaactgctgatttcctggcaatgatgcagatgggatttgc
tccaaagaaccatttctaaacaggtccacatccctgctccttaataacct
tttttttcaccactacctctgttggtgatgggctagaaggaaggttaaag
catttaaaagtaggatttgaaaaaattccaagctacaaccctctatttgg
attcaaagcccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_78131421_78132425
seq2: B6Ng01-349I07.b_47_1047

seq1  GAATTCAATAGTGACCAAGCATGGCCATGCATGTCCATAATCCCAACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGTGACCAAGCATGGCCATGCATGTCCATAATCCCAACTCT  50

seq1  TGGGAGGCAGAGGCAGGAGCGACCCTATAAGTTTAAGATCATCTGAGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAGAGGCAGGAGCGACCCTATAAGTTTAAGATCATCTGAGGTC  100

seq1  CATGGTGAGTTCCAGCCAGCCAGGGACATGGGAAACCTGGCCCCCAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGAGTTCCAGCCAGCCAGGGACATGGGAAACCTGGCCCCCAAACC  150

seq1  AGAATTCAATTAGATGTCTTCATTGTGGCAGCTAAAAAGACCAACTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCAATTAGATGTCTTCATTGTGGCAGCTAAAAAGACCAACTGTGA  200

seq1  GGCGTAGAGGGTGGAGTGGAGGGTGACGTCTGGGCTCGGCTATCAGCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTAGAGGGTGGAGTGGAGGGTGACGTCTGGGCTCGGCTATCAGCACT  250

seq1  GACAGGGATATAGAGCACAGGCCATTGTCTGGAAATCTTAAAAAACAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGATATAGAGCACAGGCCATTGTCTGGAAATCTTAAAAAACAAAT  300

seq1  TCCTCTTTGTTTGTCAGTATTTACCTCAGCACTGACGTGGGAACCCAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTGTTTGTCAGTATTTACCTCAGCACTGACGTGGGAACCCAGGC  350

seq1  CCTCTGTCTCTCTAAATCACCCTTAGGCTGGAAATGGCAGCCATTTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTCTCTCTAAATCACCCTTAGGCTGGAAATGGCAGCCATTTCCAG  400

seq1  CCCCGAGCCTCCTTCCTATGAGCTCCTTCCACAGAACTAGAGCTTGGGTT  450
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCCCGAGCCTCCTTCCTATGAGCTCCTTCCACAAAACTAGAGCTTGGGTT  450

seq1  GTTGTTGTTGTTTGTTTGTTTGTTTTTAATGATAAATGGAATTTTTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTGTTTGTTTGTTTGTTTTTAATGATAAATGGAATTTTTCTTC  500

seq1  AAGTAAATGAGACTCAGGGTTCTCCACTTTCCTATCTGCTAACAGGGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATGAGACTCAGGGTTCTCCACTTTCCTATCTGCTAACAGGGACC  550

seq1  AGAAACAACACTCTGTGTTATCCAGTCATCCCTCAAGGTCCATAGCCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAACACTCTGTGTTATCCAGTCATCCCTCAAGGTCCATAGCCATC  600

seq1  CCTTGGGGACACACAGATCTCCAAATCAAAAGATCTTTAGGTCCCTATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGGACACACAGATCTCCAAATCAAAAGATCTTTAGGTCCCTATAT  650

seq1  AACAGGTCATAGGATTTGTCTGTAAACTGTATACATCCCCTGTGTGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTCATAGGATTTGTCTGTAAACTGTATACATCCCCTGTGTGCTTT  700

seq1  AAGTCAACTCTGGGTTATTTGTAATACTTAATGCACAGCAAATGCTCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAACTCTGGGTTATTTGTAATACTTAATGCACAGCAAATGCTCTAT  750

seq1  AAGTAGCTGCTGTGCATACTATAGGGAATAATGATAAGAGATAAGTATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTGCTGTGCATACTATAGGGAATAATGATAAGAGATAAGTATAT  800

seq1  ATCAACTAACAAGACCACCCAGAGCTCCCAGGGACTAAACCACCAACCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTAACAAGACCACCCAGAGCTCCCAGGGACTAAACCACCAACCAA  850

seq1  AGAGTATACATGGAGGGACCCATGGGTCCAGATACATATGTATCAGAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATACATGGAGGGACCCATGGGTCCAGATACATATGTATCAGAGGA  900

seq1  TGGCCTTGTCGG-ACATCAATGGGAAGGGAGTCCTTGGTCCTATGGAAGC  949
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGTCGGAACATCAATGGGAAGGGAGTCCTTGGTCCTATGGAAGC  950

seq1  TTGATGCTCCAGCATATGGGAATGCTAGAGCAGTGAGGAGGGAGTGGGTG  999
       ||||||| ||||||||||||||||||||||| ||| || ||||||||| 
seq2  -TGATGCT-CAGCATATGGGAATGCTAGAGCA-TGA-GAAGGAGTGGGT-  995

seq1  GGTGGG  1005
      ||||||
seq2  GGTGGG  1001

seq1: chr13_74918031_74918670
seq2: B6Ng01-349I07.g_153_345

seq1  CAAAAAATATTAATTTCAGTGGAAGAGCATGTCAAAACATTGTGCAAATT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATTATACTTCTACAAACACTTTATCAAACAGCAGACAAGTTAATGCATTA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CACACACATGGATTATCATACTACCACAAACAATTTATCAAATAAGAATC  150
                                                        
seq2  --------------------------------------------------  0

seq1  AGGTTCATACACTAAACATACACATTCACACAAAGTAAAATAACACTTGT  200
                                                        
seq2  --------------------------------------------------  0

seq1  AATTTTCATAATGTTGCCTGAAGAGTAGCATAGAAATAATATATAAATAG  250
                                                        
seq2  --------------------------------------------------  0

seq1  TGAAAAGCAAGTTTCACAAAAGTCCTCACCTGAGAAGCCATCATTTTGAA  300
                                                        
seq2  --------------------------------------------------  0

seq1  ACATTAAGCCCTTCTAAAAATGTCACTCCCTCTGCAGTGGCTGACTCCTT  350
                                                        
seq2  --------------------------------------------------  0

seq1  TCTTGTGGTTCAACAGAGTATGTGTAATGTATGACACAACCTCTAGAGAG  400
                                                        
seq2  --------------------------------------------------  0

seq1  ATAATTTAGCAATAGATCTCAAAGACATAATTATACTAAGAAAATGTTGT  450
               ||| | || |||  |   |||||    | ||       |||
seq2  ---------CAAAAAATTTCAGTGGTTTAATT----TCAG-------TGT  30

seq1  CTTAGAGAAATACAAGCAAGTACCTTTTTTTGTTGTTGTTTGTTTGTTTT  500
                              |||||||||  |||||||||||||||
seq2  ------------------------TTTTTTTGT--TTGTTTGTTTGTTTT  54

seq1  GTTGTTGTTGTTTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCC  550
      ||| ||||| |||  | ||||||||||||||||| |||| ||||||||||
seq2  GTT-TTGTTTTTTCCCGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCC  103

seq1  TGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCTCCTG  600
      ||||||||| | ||||||||||||  ||||| ||||||||||||||||||
seq2  TGGAACTCATTCTGTAGACCAGGCCAGCCTCAAACTCAGAAATCCTCCTG  153

seq1  CCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCAC  640
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCAC  193