BAC Information

Click to search

BAC

Clone NameB6Ng01-350C02
Chromosome13 (Build37)
Map Location 103,252,603 - 103,417,718
singlet/doubletdoublet
Overlap genenone
Upstream genePik3r1
Downstream geneCd180, Mast4, EG621312, EG432800, LOC432801, LOC100040045
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350C02.bB6Ng01-350C02.g
ACCGA130897GA130898
length1,1151,093
definitionB6Ng01-350C02.b B6Ng01-350C02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,252,603 - 103,253,728)(103,416,612 - 103,417,718)
sequence
gaattcacctccttggaatgactgcaatctcaggagggtcacatatcttg
gcagtgatgtacaattgtaactctcgcatattcatcagcttcacacagct
tggaccacagcaaatgacagatgcaggtacaatttgatgctgagaagaga
aattggaaagaaaccaacatcactgacttgacctgcccaactgcactaga
gagcatgagatctgaatcaacatgatcaggacacagggtttctagtccct
cccatcatggggccaatgatgtttatatatttgcttctgttgtctgtctc
tactagtaaataaaataaaattgaaaccgagtctacctgtaacaggcagg
gcaaaggtccagcgttcccatccaaagcacacgtttcaggagctacaggt
gccttgtcatttcattcttctccacgaaacaaaaggagttaaataaatta
taattctctcctagagtaaattacttattgccttccccctgtgacgcagg
tccactgtgtgccaactttaggtatttcttcactgatgtttctaaagagt
ttggctttggtggatcaaactctttcttcttgattttaaagatttgtata
gataaatacctcacagactagagttctttttggacagttggacaacagct
atatacgaaactcttaatcataataaggtgacacaataagatgtcacctt
aaaagaaaaatacacgctagcagatcaaacaatatgtctttccacgccgt
gctgcacacaggccatgctctccctaccactgtcatagaagttcagaagt
atgcaagttagaagttaagaaaaaaaattttaaactcacagaaaagtgac
tgatttgcacatttctctttccaaactctgcactcttcagtttcaaattt
ctaaccagagacatatgggttggtagtggaaatgacttcttgttctttaa
aaaacaaaaacattaaaaaaaaaagttgttggatgctgtagaatgtcact
tctgggaataataagagttctgaggcgcagtgctgtctttattgtaagca
gaatacgatggggatgagagtgagcagcatggggagtcgtcagctctgca
ttattctaggcatga

gaattcagcttgtctaaataagacacacctatttatttatttatttattt
ttaaaaatattttttattacgtattttcctcaattacatttccaatgcta
tcccaaaagtcacccataccctcccccccccactcccctacccacccatt
cccactttttggccctggtgttcccctgtactggggcatataaagtttgc
gtgtccaatgggcctctctttccagtgatggccgactaggccatcttttg
atacatatgcagctagagtcaagagctccagggtactggttagttcataa
tgttgttgcacctacagggttgcagatctctttagctccttgtatacttt
ctctagctcctccattgggggccctgtgctccatccaatagctgactgtg
agcatccacttatgtgtttgctaggccctggcctagtctcacaagagacg
tctatatcagggtcctttcagcaaacgcttgctagtgtttgcaatggaag
acacacctttttttgattgcttcttctcttgaaccttaatccccttgaaa
caccgggcatttctcccagttgtctctggaccagcttgggcttgaaggat
gtctaggtttggaggaaataggaacagggtcatttgtgttagagagataa
agatgtgcaaaggaccagatgaacaaggaatgtggaataatcaggaaatg
taaagttaactcttgctgggaggtgggagggctggccaggttttccagga
cacagtggtggtctgcctgagcatcttgtttttgaacacttaccagagca
gcccaagtcaaagtgaggaaagtgataagaaccagatcacaaggattttg
tctgtcataccaaggagctgatgtttgtcctcaaagtcagaggatcgtgt
ggtgtgttttttttagaatagtgtgacatgttcatatttaaattcagaaa
gacacaccagaaaaccattagtggatatgtgaggagcagagtgccactgg
atgggttctcagctgcatgaattctaggtagcacactgaggtaatgggtt
gagtgagaaagtcccatggagagatgctaaagatatcgtaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_103252603_103253728
seq2: B6Ng01-350C02.b_45_1159

seq1  GAATTCACCTCCTTGGAATGACTGCAATCTCAGGAGGGTCACATATCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCCTTGGAATGACTGCAATCTCAGGAGGGTCACATATCTTG  50

seq1  GCAGTGATGTACAATTGTAACTCTCGCATATTCATCAGCTTCACACAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGATGTACAATTGTAACTCTCGCATATTCATCAGCTTCACACAGCT  100

seq1  TGGACCACAGCAAATGACAGATGCAGGTACAATTTGATGCTGAGAAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCACAGCAAATGACAGATGCAGGTACAATTTGATGCTGAGAAGAGA  150

seq1  AATTGGAAAGAAACCAACATCACTGACTTGACCTGCCCAACTGCACTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAAAGAAACCAACATCACTGACTTGACCTGCCCAACTGCACTAGA  200

seq1  GAGCATGAGATCTGAATCAACATGATCAGGACACAGGGTTTCTAGTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGAGATCTGAATCAACATGATCAGGACACAGGGTTTCTAGTCCCT  250

seq1  CCCATCATGGGGCCAATGATGTTTATATATTTGCTTCTGTTGTCTGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCATGGGGCCAATGATGTTTATATATTTGCTTCTGTTGTCTGTCTC  300

seq1  TACTAGTAAATAAAATAAAATTGAAACCGAGTCTACCTGTAACAGGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTAAATAAAATAAAATTGAAACCGAGTCTACCTGTAACAGGCAGG  350

seq1  GCAAAGGTCCAGCGTTCCCATCCAAAGCACACGTTTCAGGAGCTACAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGTCCAGCGTTCCCATCCAAAGCACACGTTTCAGGAGCTACAGGT  400

seq1  GCCTTGTCATTTCATTCTTCTCCACGAAACAAAAGGAGTTAAATAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTCATTTCATTCTTCTCCACGAAACAAAAGGAGTTAAATAAATTA  450

seq1  TAATTCTCTCCTAGAGTAAATTACTTATTGCCTTCCCCCTGTGACGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTCTCCTAGAGTAAATTACTTATTGCCTTCCCCCTGTGACGCAGG  500

seq1  TCCACTGTGTGCCAACTTTAGGTATTTCTTCACTGATGTTTCTAAAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGTGTGCCAACTTTAGGTATTTCTTCACTGATGTTTCTAAAGAGT  550

seq1  TTGGCTTTGGTGGATCAAACTCTTTCTTCTTGATTTTAAAGATTTGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTGGTGGATCAAACTCTTTCTTCTTGATTTTAAAGATTTGTATA  600

seq1  GATAAATACCTCACAGACTAGAGTTCTTTTTGGACAGTTGGACAACAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATACCTCACAGACTAGAGTTCTTTTTGGACAGTTGGACAACAGCT  650

seq1  ATATACGAAACTCTTAATCATAATAAGGTGACACAATAAGATGTCACCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACGAAACTCTTAATCATAATAAGGTGACACAATAAGATGTCACCTT  700

seq1  AAAAGAAAAATACACGCTAGCAGATCAAACAATATGTCTTTCCACGCCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAATACACGCTAGCAGATCAAACAATATGTCTTTCCACGCCGT  750

seq1  GCTGCACACAGGCCATGCTCTCCCTACCACTGTCATAGAAGTTCAGAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACACAGGCCATGCTCTCCCTACCACTGTCATAGAAGTTCAGAAGT  800

seq1  ATGCAAGTTAGAAGTTAAGAAAAAAAATTTTAAACTCACAGAAAAGTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGTTAGAAGTTAAGAAAAAAAATTTTAAACTCACAGAAAAGTGAC  850

seq1  TGATTTGCACATTTCTCTTTCCAAACTCTGCACTCTTCAGTTTCAAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGCACATTTCTCTTTCCAAACTCTGCACTCTTCAGTTTCAAATTT  900

seq1  CTAACCAGAGACATAT-GGTTGGTAGTGGAAATGACTTCTTGTTCTTTAA  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTAACCAGAGACATATGGGTTGGTAGTGGAAATGACTTCTTGTTCTTTAA  950

seq1  AAAACAAAAAACATTAAAAAAAAAAGTTGTTGGATGCTGTAGAATTGTCA  999
      ||||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAAC-AAAAACATTAAAAAAAAAAGTTGTTGGATGCTGTAGAA-TGTCA  998

seq1  CTTCTGGGAAT-ATAAGAGTTCTGAGGCGCAGTGCTGTCCTTTATGTAAG  1048
      ||||||||||| ||||||||||||||||||||||||||| ||  ||||||
seq2  CTTCTGGGAATAATAAGAGTTCTGAGGCGCAGTGCTGTCTTTATTGTAAG  1048

seq1  CAG-ATAGGGAATGGGGAAGGAGAGGTGAGCAAGGGCAATGGGGGAGTTC  1097
      ||| ||| |  |||||| | |||| |||||||   |||   |||||| ||
seq2  CAGAATACG--ATGGGG-ATGAGA-GTGAGCA---GCA--TGGGGAG-TC  1088

seq1  GTTCAAGCTCTGCAATAATCTAGGCATGA  1126
      ||   ||||||||| || |||||||||||
seq2  GT--CAGCTCTGCATTATTCTAGGCATGA  1115


seq1: chr13_103416612_103417718
seq2: B6Ng01-350C02.g_70_1162 (reverse)

seq1  TGTTACGATATCCTTAGCATCTCTTCATGGGGCTGTCCTCACTTCAACCC  50
      |||||||||||| ||||||||||| |||||| || | ||||| |||||||
seq2  TGTTACGATATCTTTAGCATCTCTCCATGGGACT-TTCTCAC-TCAACCC  48

seq1  ATTACCCTCAGTGTGCCTACCTAGAATCAATGCAGCTGAGAACCCAATTC  100
      |||| |||||||||| |||||||||||  |||||||||||||||||    
seq2  ATTA-CCTCAGTGTG-CTACCTAGAATTCATGCAGCTGAGAACCCA---T  93

seq1  CCAGTTGGCCACTCTGCT-CTCAACCTTATCCCACTAAATTGGTTTTCTG  149
      |||||  | ||||||||| ||||  | ||| |||||||  ||||||||||
seq2  CCAGT--GGCACTCTGCTCCTCA--CATAT-CCACTAA--TGGTTTTCTG  136

seq1  GTGTGTCTTTCTGAATTTAAATATGAACATGTCACACTATTCTAAAAAAA  199
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTGTGTCTTTCTGAATTTAAATATGAACATGTCACACTATTCT-AAAAAA  185

seq1  AACACACCACACGATCCTCTGACTTTGAGGACAAACATCAGCTCCTTGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACCACACGATCCTCTGACTTTGAGGACAAACATCAGCTCCTTGGT  235

seq1  ATGACAGACAAAATCCTTGTGATCTGGTTCTTATCACTTTCCTCACTTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGACAAAATCCTTGTGATCTGGTTCTTATCACTTTCCTCACTTTG  285

seq1  ACTTGGGCTGCTCTGGTAAGTGTTCAAAAACAAGATGCTCAGGCAGACCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGCTGCTCTGGTAAGTGTTCAAAAACAAGATGCTCAGGCAGACCA  335

seq1  CCACTGTGTCCTGGAAAACCTGGCCAGCCCTCCCACCTCCCAGCAAGAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGTCCTGGAAAACCTGGCCAGCCCTCCCACCTCCCAGCAAGAGT  385

seq1  TAACTTTACATTTCCTGATTATTCCACATTCCTTGTTCATCTGGTCCTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTACATTTCCTGATTATTCCACATTCCTTGTTCATCTGGTCCTTT  435

seq1  GCACATCTTTATCTCTCTAACACAAATGACCCTGTTCCTATTTCCTCCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCTTTATCTCTCTAACACAAATGACCCTGTTCCTATTTCCTCCAA  485

seq1  ACCTAGACATCCTTCAAGCCCAAGCTGGTCCAGAGACAACTGGGAGAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGACATCCTTCAAGCCCAAGCTGGTCCAGAGACAACTGGGAGAAAT  535

seq1  GCCCGGTGTTTCAAGGGGATTAAGGTTCAAGAGAAGAAGCAATCAAAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGTGTTTCAAGGGGATTAAGGTTCAAGAGAAGAAGCAATCAAAAAA  585

seq1  AGGTGTGTCTTCCATTGCAAACACTAGCAAGCGTTTGCTGAAAGGACCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGTCTTCCATTGCAAACACTAGCAAGCGTTTGCTGAAAGGACCCT  635

seq1  GATATAGACGTCTCTTGTGAGACTAGGCCAGGGCCTAGCAAACACATAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGACGTCTCTTGTGAGACTAGGCCAGGGCCTAGCAAACACATAAG  685

seq1  TGGATGCTCACAGTCAGCTATTGGATGGAGCACAGGGCCCCCAATGGAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTCACAGTCAGCTATTGGATGGAGCACAGGGCCCCCAATGGAGG  735

seq1  AGCTAGAGAAAGTATACAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAGAAAGTATACAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTG  785

seq1  CAACAACATTATGAACTAACCAGTACCCTGGAGCTCTTGACTCTAGCTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACATTATGAACTAACCAGTACCCTGGAGCTCTTGACTCTAGCTGC  835

seq1  ATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCA  885

seq1  TTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAA  935

seq1  AAAGTGGGAATGGGTGGGTAGGGGAGTGGGGGGGGGAGGGTATGGGTGAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGGAATGGGTGGGTAGGGGAGTGGGGGGGGGAGGGTATGGGTGAC  985

seq1  TTTTGGGATAGCATTGGAAATGTAATTGAGGAAAATACGTAATAAAAAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGATAGCATTGGAAATGTAATTGAGGAAAATACGTAATAAAAAAT  1035

seq1  ATTTTTAAAAATAAATAAATAAATAAATAGGTGTGTCTTATTTAGACAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAAATAAATAAATAAATAAATAGGTGTGTCTTATTTAGACAAG  1085

seq1  CTGAATTC  1107
      ||||||||
seq2  CTGAATTC  1093


| Home | SequenceCutter | Blast | Download |