BAC Information

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BAC

Clone NameB6Ng01-350F20
Chromosome13 (Build37)
Map Location 28,757,079 - 28,851,708
singlet/doubletdoublet
Overlap genenone
Upstream genePrl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1
Downstream geneLOC626683, 2610307P16Rik, Sox4, LOC100041135, Cdkal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350F20.bB6Ng01-350F20.g
ACCGA131056GA131057
length1,131387
definitionB6Ng01-350F20.b B6Ng01-350F20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,757,079 - 28,758,239)(28,851,316 - 28,851,708)
sequence
gaattcaatcagttaatgcttcagggtctgcctgtcaaacactgacagct
agcaatcaatgtaagaagttactttgcaaaatggatttttttttcccctt
tcgaatctgagactcggaagcccgactgctgggtttccctggaacatatc
cagcttcttatttcagcttcagcttcagacattgggttttgtttctagaa
gacaagagcacagggcttaggaactggctactaagtctgctttgaaaaac
tgttggggttttctctgcaaacttcttcagccctttttcttctccattct
aacgcccccccccttcatggtgggcctaactgcttaggtaatacacagac
agatgtcctgactgagagatggatgagtactgtctgcgcatgctcttgtt
tctcagtgaaaaagtagcatgctatcccagtccctacaggagcgcctctc
tgactcagtctgcagcccctcaagtctttatcaaccaggactactgataa
tacctggcaattcaaccaagcaagtattgcaatattccccttcttaatgc
acatcaaactcattaaaccctttctgaaaactcagcactatatacacccc
acccccaccccgtgccaacaatttctatgtaatgaagcatcagctccagg
agccgagatccattcattgaggatggctctaggctgtcggcattgccact
cttgtgtattactctcatggacacaggagccccgacagcttagtgtttat
taaagaaatatgtactactacagtggatggctctccttcagtcctttcaa
aaacaaagaaaggaaggccagcctagctggtaaaggctcttactgagcaa
gacctttaattccttgaacctgaggtggaaggacagaaatgactccccaa
attgtcctctgacctccctggacctgtctcacatcctagggcaaatgcat
gagcacacagataaaaactagttagtaaaattttagagtgaaaaggatta
cactttgtgtgcacactgaaatctagcactactgctgcagtgagatcaga
gtacagcatctactatataggcactgagcagctggttcacatgaacttct
tctacgtaatgaatgatgatgatgatgtggt

tgagttgtcattattgggtcttaacttcttttagcttgagaaaagacagt
gtttctgagtgttatacacggtgggggtgggggtgcagtgggacctgagt
tgtatgtagcaagggtatgcatcatctatttgagactatattttttgaga
aataccatttttgatgccaacaattgtgattgatatattaggccaaatca
taaaagactgcctatcttttggtgtttcatgccttttgaaacagttcagc
cttttttgtttgacttaaatggaagtcagtgagttaggctatatgagatc
tctatttctctatttggaaatacagggtgacctagggttggttatgtgcc
aactcatgtagtgtgtgtgtgtgtgtgtggtgagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_28757079_28758239
seq2: B6Ng01-350F20.b_49_1179

seq1  GAATTCAATCAGTTAATGCTTCAGGGTCTGCCTGTCAAACACTGACAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCAGTTAATGCTTCAGGGTCTGCCTGTCAAACACTGACAGCT  50

seq1  AGCAATCAATGTAAGAAGTTACTTTGCAAAATGGATTTTTTTTTCCCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCAATGTAAGAAGTTACTTTGCAAAATGGATTTTTTTTTCCCCTT  100

seq1  TCGAATCTGAGACTCGGAAGCCCGACTGCTGGGTTTCCCTGGAACATATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATCTGAGACTCGGAAGCCCGACTGCTGGGTTTCCCTGGAACATATC  150

seq1  CAGCTTCTTATTTCAGCTTCAGCTTCAGACATTGGGTTTTGTTTCTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTTATTTCAGCTTCAGCTTCAGACATTGGGTTTTGTTTCTAGAA  200

seq1  GACAAGAGCACAGGGCTTAGGAACTGGCTACTAAGTCTGCTTTGAAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAGCACAGGGCTTAGGAACTGGCTACTAAGTCTGCTTTGAAAAAC  250

seq1  TGTTGGGGTTTTCTCTGCAAACTTCTTCAGCCCTTTTTCTTCTCCATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGGTTTTCTCTGCAAACTTCTTCAGCCCTTTTTCTTCTCCATTCT  300

seq1  AACGCCCCCCCCCTTCATGGTGGGCCTAACTGCTTAGGTAATACACAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCCCCCCCCCTTCATGGTGGGCCTAACTGCTTAGGTAATACACAGAC  350

seq1  AGATGTCCTGACTGAGAGATGGATGAGTACTGTCTGCGCATGCTCTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCCTGACTGAGAGATGGATGAGTACTGTCTGCGCATGCTCTTGTT  400

seq1  TCTCAGTGAAAAAGTAGCATGCTATCCCAGTCCCTACAGGAGCGCCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGAAAAAGTAGCATGCTATCCCAGTCCCTACAGGAGCGCCTCTC  450

seq1  TGACTCAGTCTGCAGCCCCTCAAGTCTTTATCAACCAGGACTACTGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAGTCTGCAGCCCCTCAAGTCTTTATCAACCAGGACTACTGATAA  500

seq1  TACCTGGCAATTCAACCAAGCAAGTATTGCAATATTCCCCTTCTTAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGCAATTCAACCAAGCAAGTATTGCAATATTCCCCTTCTTAATGC  550

seq1  ACATCAAACTCATTAAACCCTTTCTGAAAACTCAGCACTATATACACCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAACTCATTAAACCCTTTCTGAAAACTCAGCACTATATACACCCC  600

seq1  ACCCCCACCCCGTGCCAACAATTTCTATGTAATGAAGCATCAGCTCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCACCCCGTGCCAACAATTTCTATGTAATGAAGCATCAGCTCCAGG  650

seq1  AGCCGAGATCCATTCATTGAGGATGGCTCTAGGCTGTCGGCATTGCCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGAGATCCATTCATTGAGGATGGCTCTAGGCTGTCGGCATTGCCACT  700

seq1  CTTGTGTATTACTCTCATGGACACAGGAGCCCCGACAGCTTAGTGTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTATTACTCTCATGGACACAGGAGCCCCGACAGCTTAGTGTTTAT  750

seq1  TAAAGAAATATGTACTACTACAGTGGATGGCTCTCCTTCAGTCCTTTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAATATGTACTACTACAGTGGATGGCTCTCCTTCAGTCCTTTCAA  800

seq1  AAACAAAGAAAGGAAGGCCAGCCTAGCTGGTAAAGGCTCTTACTGAGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGAAAGGAAGGCCAGCCTAGCTGGTAAAGGCTCTTACTGAGCAA  850

seq1  GACCTTTAATTCCTTGAACCTGAGGTGGAAGGACAGAAATGACTCCCCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTAATTCCTTGAACCTGAGGTGGAAGGACAGAAATGACTCCCCAA  900

seq1  ATTGTCCTCTGACCTCCCTGGACCTGTCTCACATCCTAGGGCAAATGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCTCTGACCTCCCTGGACCTGTCTCACATCCTAGGGCAAATGCAT  950

seq1  GAGCACACAGATAAAAAACTAGTTAAGTAAAAATTTTAGAGTGAAAAGGA  1000
      |||||||||||| ||||||||||| ||| |||||||||||||||||||||
seq2  GAGCACACAGAT-AAAAACTAGTT-AGT-AAAATTTTAGAGTGAAAAGGA  997

seq1  TTTACACTTTGTGGTGCACACCTGAAATCCTAGCACTTACTTGCTTGCAA  1050
       ||||||||||| ||||||| ||||||| ||||||| ||| ||| |||| 
seq2  -TTACACTTTGT-GTGCACA-CTGAAAT-CTAGCAC-TAC-TGC-TGCA-  1039

seq1  GGTGGAGAATCAGGAGTACAAGGCCATCCTTAACTATATAAGCACTGGAG  1100
       || ||| |||| |||||||    ||||    |||||||| ||||| |||
seq2  -GT-GAG-ATCA-GAGTACA---GCATC---TACTATATAGGCACT-GAG  1078

seq1  GCCAGCCTGGGTCACATGAAACTTTCTTCTACGTAAATGAAATGATGATG  1150
        ||| |||| |||||||||   ||||||||||| |||| ||||||||||
seq2  --CAG-CTGGTTCACATGAA--CTTCTTCTACGT-AATG-AATGATGATG  1121

seq1  ATGATGGTGGT  1161
      ||||| |||||
seq2  ATGAT-GTGGT  1131


seq1: chr13_28851316_28851708
seq2: B6Ng01-350F20.g_65_457 (reverse)

seq1  CCCCTCACCACACACACACACACACACTACATGAGTTGGCACATAACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCACCACACACACACACACACACTACATGAGTTGGCACATAACCAA  50

seq1  CCCTAGGTCACCCTGTATTTCCAAATAGAGAAATAGAGATCTCATATAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGGTCACCCTGTATTTCCAAATAGAGAAATAGAGATCTCATATAGC  100

seq1  CTAACTCACTGACTTCCATTTAAGTCAAACAAAAAAGGCTGAACTGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCACTGACTTCCATTTAAGTCAAACAAAAAAGGCTGAACTGTTTC  150

seq1  AAAAGGCATGAAACACCAAAAGATAGGCAGTCTTTTATGATTTGGCCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCATGAAACACCAAAAGATAGGCAGTCTTTTATGATTTGGCCTAA  200

seq1  TATATCAATCACAATTGTTGGCATCAAAAATGGTATTTCTCAAAAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAATCACAATTGTTGGCATCAAAAATGGTATTTCTCAAAAAATAT  250

seq1  AGTCTCAAATAGATGATGCATACCCTTGCTACATACAACTCAGGTCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAAATAGATGATGCATACCCTTGCTACATACAACTCAGGTCCCAC  300

seq1  TGCACCCCCACCCCCACCGTGTATAACACTCAGAAACACTGTCTTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCCCACCCCCACCGTGTATAACACTCAGAAACACTGTCTTTTCTC  350

seq1  AAGCTAAAAGAAGTTAAGACCCAATAATGACAACTCAGAATTC  393
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAAAGAAGTTAAGACCCAATAATGACAACTCAGAATTC  393


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