BAC Information

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BAC

Clone NameB6Ng01-350O23
Chromosome13 (Build37)
Map Location 10,039,256 - 10,040,386
singlet/doubletsinglet
Overlap geneChrm3
Upstream geneLarp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11, LOC100039604
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350O23.bB6Ng01-350O23.g
ACCGA131459GA131460
length1,2131,133
definitionB6Ng01-350O23.b B6Ng01-350O23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccctgcagccgttagcaagaactttaatgagtatttttgcattga
tattcataagggaaattggtctgaagttctctatctttgttgggtccttt
tgtggtttaggtatcagagtaattgtggcttcatagaatgagttgggtag
agtaccttctgcttctattttgtggaatagtttgtgaggaactgggatta
gatcttctttgaaggtctgatagaactctgcactaaacccatctggtcct
gggctttgtttggttgggagactattaatgactgcttctatttgtttagg
ggatataggactgtttagaccattaacctgctcttgatttaactttggta
cctggtatctgtctagaaatttgtcccattcatccaggttctccagtttt
gttgagtatagccttttgtagaaggatctgatggtgttttggatttcttc
aggatctgttgttatttctcccttttcatttctgattttgttaattagga
tgctttccctgtgccctctagtgagtctggctaagggtttatctatcttg
ttgattttctcaaagaaccaactccttgtttggttgattctttgaatagt
tcttcttgtttccacttggttgatttcacccctgtgtttgattatttcct
gctgtctactcctcttgggtgaatttgcttcctttttttctagagctttt
aggtgtgttgtcaacctgctagtgtgtgctctctctagtttctttttgga
ggcactcagagctatgagttttcctcttaaaaatgctttcatagtgtccc
ataagtttgggtatgttgtggcttcattttcattaaactctaaaaagtcc
ttaatttcttttctttatttccttccttgactcaaggtatcatttgagaa
gagtgttcagtttccacatgaatgttggctttctattatttaatttttgt
tattgaagatcagccttaaatccatggtgcctctgaatagatgcatggga
caatttcatatttttttcaattgttttgtgaccaattatgtgggtcattt
tttggagaaggtatccatgaagtgcctggagaaagaaaggtatatccctt
tgtttaagataaaatgatcctgtaggattctgttgaatccacctggttca
accttcatagattcactgttttcctggttagtttcgtgattctcgatgaa
tctcgagctccta
gaattccctatgaaacatctgtcttccatagccactggcctgttccccag
atcctcccagttactgctcaattgtcctctcttggaggttttaattgacc
ctccagtttgaaacctaccaaccccctgccaccactttgtgctgtatacc
tttgcttttgggttgtttttccaatagtattgactacccactaatatttt
gtattatgctcatttgttttgtcacatttctatgtgtgtgagctcagtta
tgacagggactaggacacttctgttcactgctgaaacccagagcctaaag
accttagtgcctagttcatgaaacatctccatgaatatatgctgaatgaa
attggtattaatgtcacctttacaatcatgattcgagaagaaagaaggaa
tcagggaactagcatggccattctggaaaggagtataattcaggtgtttg
caagctctggttggatctgggttctaacttacatgcgctaaacctttgat
ctcgggcctgtgaggagctctcgcttatctgctcatacatggtatggaaa
gattcagacagttcatgtgcaggacatatatctaatgctgttgtgcagta
atttattcagtgttaaaagtctcagtcttggagagaagctccttaatgct
cagggtgttttaaagggtggtgaaacattccatcccacagggaatcttgt
caaaatcaggaagtaaacaagtcaaaaacttcaagaagttccagaaactg
actagactttacttggcttctcattcttcagccatgtttaagcagtgtga
tggtttgtatatccttggagcagggagtggcaccatctgaaggtgtgggc
cttgtttaaataggtgtgacctggttggaatgggtgtgtcactgtggtgt
gggtataagatccctcaccctagttgcctggaagtcagtcttccactagc
agcctttgggaacatagaactcacagcttcctcctgtgccatgcctgcct
ggatactgccatgctcccactgaatgataatggactgactctgaactgta
agcccagcccaataaattgtttttttaaataagaccttgcctagatcatg
gtgtctgttccagcaggtaaagccgtaactaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_10039256_10040386
seq2: B6Ng01-350O23.g_67_1199

seq1  GAATTCCCTATGAAACATCTGTCTTCCATAGCCACTGGCCTGTTCCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTATGAAACATCTGTCTTCCATAGCCACTGGCCTGTTCCCCAG  50

seq1  ATCCTCCCAGTTACTGCTCAATTGTCCTCTCTTGGAGGTTTTAATTGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCCAGTTACTGCTCAATTGTCCTCTCTTGGAGGTTTTAATTGACC  100

seq1  CTCCAGTTTGAAACCTACCAACCCCCTGCCACCACTTTGTGCTGTATACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTTTGAAACCTACCAACCCCCTGCCACCACTTTGTGCTGTATACC  150

seq1  TTTGCTTTTGGGTTGTTTTTCCAATAGTATTGACTACCCACTAATATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTTGGGTTGTTTTTCCAATAGTATTGACTACCCACTAATATTTT  200

seq1  GTATTATGCTCATTTGTTTTGTCACATTTCTATGTGTGTGAGCTCAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATGCTCATTTGTTTTGTCACATTTCTATGTGTGTGAGCTCAGTTA  250

seq1  TGACAGGGACTAGGACACTTCTGTTCACTGCTGAAACCCAGAGCCTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGGACTAGGACACTTCTGTTCACTGCTGAAACCCAGAGCCTAAAG  300

seq1  ACCTTAGTGCCTAGTTCATGAAACATCTCCATGAATATATGCTGAATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGTGCCTAGTTCATGAAACATCTCCATGAATATATGCTGAATGAA  350

seq1  ATTGGTATTAATGTCACCTTTACAATCATGATTCGAGAAGAAAGAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTATTAATGTCACCTTTACAATCATGATTCGAGAAGAAAGAAGGAA  400

seq1  TCAGGGAACTAGCATGGCCATTCTGGAAAGGAGTATAATTCAGGTGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAACTAGCATGGCCATTCTGGAAAGGAGTATAATTCAGGTGTTTG  450

seq1  CAAGCTCTGGTTGGATCTGGGTTCTAACTTACATGCGCTAAACCTTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCTGGTTGGATCTGGGTTCTAACTTACATGCGCTAAACCTTTGAT  500

seq1  CTCGGGCCTGTGAGGAGCTCTCGCTTATCTGCTCATACATGGTATGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGCCTGTGAGGAGCTCTCGCTTATCTGCTCATACATGGTATGGAAA  550

seq1  GATTCAGACAGTTCATGTGCAGGACATATATCTAATGCTGTTGTGCAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGACAGTTCATGTGCAGGACATATATCTAATGCTGTTGTGCAGTA  600

seq1  ATTTATTCAGTGTTAAAAGTCTCAGTCTTGGAGAGAAGCTCCTTAATGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCAGTGTTAAAAGTCTCAGTCTTGGAGAGAAGCTCCTTAATGCT  650

seq1  CAGGGTGTTTTAAAGGGTGGTGAAACATTCCATCCCACAGGGAATCTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGTTTTAAAGGGTGGTGAAACATTCCATCCCACAGGGAATCTTGT  700

seq1  CAAAATCAGGAAGTAAACAAGTCAAAAACTTCAAGAAGTTCCAGAAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCAGGAAGTAAACAAGTCAAAAACTTCAAGAAGTTCCAGAAACTG  750

seq1  ACTAGACTTTACTTGGCTTCTCATTCTTCAGCCATGTTTAAGCAGTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACTTTACTTGGCTTCTCATTCTTCAGCCATGTTTAAGCAGTGTGA  800

seq1  TGGTTTGTATATCCTTGGAGCAGGGAGTGGCACCATCTGAAGGTGT-GGC  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGGTTTGTATATCCTTGGAGCAGGGAGTGGCACCATCTGAAGGTGTGGGC  850

seq1  CTTGTTTAAATAGGTGTGACCTGGTTGGAATGGGTGTGTCACTGTGGGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTGTTTAAATAGGTGTGACCTGGTTGGAATGGGTGTGTCACTGT-GGTG  899

seq1  TGGGTATAAGAT-CCTCACCCTAGTTGCCTGGAAGTCAGTCTTCCACTAG  948
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGGGTATAAGATCCCTCACCCTAGTTGCCTGGAAGTCAGTCTTCCACTAG  949

seq1  CAGCCTTTGG--ACATAGAACTCACAGC-TCCTCCTGTGCCATGCCTGCC  995
      ||||||||||  |||||||||||||||| |||||||||||||||||||||
seq2  CAGCCTTTGGGAACATAGAACTCACAGCTTCCTCCTGTGCCATGCCTGCC  999

seq1  TGGATACTGCCATGCTCCCACCTTGATGATAATGGACTGAACCTCTGAAC  1045
      |||||||||||||||||||| ||  |||||||||||||||  ||||||| 
seq2  TGGATACTGCCATGCTCCCA-CTGAATGATAATGGACTGA--CTCTGAA-  1045

seq1  CTGTAAGCCAGCCCCAATTAAATGTTTTTTT-AATAAGA-CTTGCCTTGG  1093
      |||||||||   |||||| || ||||||||| ||||||| ||||||| | 
seq2  CTGTAAGCCCAGCCCAATAAATTGTTTTTTTAAATAAGACCTTGCCTAGA  1095

seq1  TCATGGTGTCTGTTCACAGCA-GTAAAACCCTAACTAAG  1131
      ||||||||||||||| ||||| ||||| || ||||||||
seq2  TCATGGTGTCTGTTC-CAGCAGGTAAAGCCGTAACTAAG  1133