BAC Information

Click to search

BAC

Clone NameMSMg01-045E08
Chromosome13 (Build37)
Map Location 47,693,406 - 47,693,582
singlet/doubletsinglet
Overlap genenone
Upstream geneCap2, C78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
Downstream gene4931429P17Rik, Id4, LOC667351, Zfp169, A830005F24Rik, AW456874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045E08.T7 (MSMg01no045_e08.b1)MSMg01-045E08.TJ (MSMg01no045_e08.g1)
ACCAG275945AG275946
length752779
length of high quality
(start - end)
194 (121 - 314)177 (127 - 303)
definitionCHROMAT_FILE: MSMg01no045_e08.b1 PHD_FILE: MSMg01no045_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:11 2005CHROMAT_FILE: MSMg01no045_e08.g1 PHD_FILE: MSMg01no045_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNCCCCTTTTNNNNTTTNNTCCATATTTTTG
NGGGCTCTAAATTTGCGGCGCTAAACGACTCCTATCCCAAAGGACCGCGG
AATTCTACTCTTCCCCTTAGAAATTTGACTATGGAAAGCATTTATCTTTT
TACACACACATGTGTATGTGTATATAGATATATATGTGTGTGCATGAATG
TGAGGATATACATATATATGTGTATGAATATGTACATACACATGTATATA
TTTATATATATATTCATATATACATATATGAATGTGAGTTAATTACTCTA
TTTGTCCAAGCAGAGGAAGCTGTAAATAGATGAGAGATATCTTTGGTTTT
TTTTCCCCCTTCGGCTTTTTTATACAGGGTTTCTCTGTATAGCCCTGGCT
GTCCTGTAACTCACTCTGCACACCAGGCTGGCCTCATACTCATAAATCTG
CCTGCCTCTGCCTCCCAAGTGCTGGCATTAAAGGTATGTGCCACCACTAC
CCGGCCACATCTTTGTTCTTGTTTCATTTACCCTACCCAACTGCAACCGC
TTTGTGGATGGGGCCAACTTCCTTATCAAGGAATATAAGGCTAGCTTAAA
AGTGCCACTTGATTTTCTTGAATCCCTCCGCCAAATCCTATTTCTAGTGC
TTCGCACCATTAAAAATAATTTCGAAAACTGCCGTCCAAAGTCCCCTTTG
ACTTGACTTTGTCCTACCTTTGCTTCCCCACTTTTGCTTCTATATTTGTA
TC
NNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNNNNNNNNNNNNTGGTC
AAAATANCACAATGCAGTGGGTAGCCTGGCGGCGCCTGTTCAACACAAGG
GGTGACCTATAGAATTCCCGCGGAATCATTTCCCCTTCAGGACATCGCTT
TTGTCTCAGCAGCCCACAGCACTGCAGACAGCAGCTCAGAACTACACCTA
GGTGGGTCTCAGAGACCTGTTTTCTTGTACGTAGAGGAGGCAGCCATGTG
CACAGCTGCATCTGCTATGGGTTCCAGAACCAGCGCCTACAAAGCTGCTC
TACCTGTGACAGAGGAAATGAAAGGCGCCCAGCTGAGCTCCGATTCTCTT
CACTTCAAAACCAGAGTCCTTTCTATAGGGTCCAGTGCCCCAGCACACTA
AGGACCTAAAAACTCTCTGCTCTATAGCCAAGTGGAACTCTGAAGGAATC
CTTACCCTCTCTGCTTGCTCTCTGCTCGGACTTGTGGAGTATAAAAGTGG
GGCCTTATGTTCCATCCTTGGTACCCAAAATCTGTTTATATCTCCCGACC
TTACCACCTGTCTTCGATGCCATCCATTTTTCATTCTGAGACCCCTTTTT
ATTAATTTCATCATTAAGACCCCTCCTCAATATAAGGTTAATCTTTAGCA
CAATCTTTTATACAATTTTGTAGCCAACATCTTACCAAATTAATTTCAGC
GATTCCATATTTTCTTTATCACTTATTTCGATAAAATTCATTGTCTGGAA
TACTTTTTACCCTACTATACTTTTTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_e08.g1 MSMg01no045_e08.g1 CHROMAT_FILE:
MSMg01no045_e08.g1 PHD_FILE: MSMg01no045_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:11 2005
         (177 letters)



>mm_chr13_47693206_47693782
          Length = 577

 Score =  327 bits (169), Expect = 3e-94
 Identities = 175/177 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttccccttcaggacatcgcttttgtctcagcagcccacagcactgcagacagcagct 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 377 catttccccttcaggacatcacttttgtctcagcagcccacagcactgcagacagcagct 318

                                                                       
Query: 61  cagaactacacctaggtgggtctcagagacctgttttcttgtacgtagaggaggcagcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cagaactacacctaggtgggtctcagagacctgttttcttgtacgtagaggaggcagcca 258

                                                                    
Query: 121 tgtgcacagctgcatctgctatgggttccagaaccagcgcctacaaagctgctctac 177
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgtgtacagctgcatctgctatgggttccagaaccagcgcctacaaagctgctctac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)