BAC Information

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BAC

Clone NameMSMg01-047B02
Chromosome13 (Build37)
Map Location 105,029,558 - 105,029,762
singlet/doubletsinglet
Overlap geneCenpk
Upstream geneMast4, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip, LOC100040086, D130037M23Rik, Nln, Sgtb, 2410002O22Rik, LOC100040518, Trim23, Ppwd1
Downstream geneAdamts6, LOC667518, Sdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp, 4933425L06Rik, LOC100040646, LOC100040656, Rnf180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047B02.T7 (MSMg01no047_b02.b1)MSMg01-047B02.TJ (MSMg01no047_b02.g1)
ACCAG277285AG277286
length703844
length of high quality
(start - end)
200 (118 - 317)200 (140 - 339)
definitionCHROMAT_FILE: MSMg01no047_b02.b1 PHD_FILE: MSMg01no047_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:21 2005CHROMAT_FILE: MSMg01no047_b02.g1 PHD_FILE: MSMg01no047_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTC
ATAATTTCATCATATTAGCCTATAAAAATTCACTAATTATTACTCAATCA
AGCTAATGTATTAGGAGGCCTAATTATTCATTAAAGAAAGAATTGAAGAG
CCAGAGATATGGCTCAATGAGTAAGTGTTTCTTTCCTGGTGACCTGTGTG
TGACCCTTTGAACTCCCAGTAGAAGAATAGAACTGACTCACTAAATGTTG
TTCTCTGACCTCCACAGAAGAGCCACTACATGAACATAACGATACTTTCA
CATACATATATACACACATACTGAAACAAATAACTTTTTAAAAGAGAGAA
CTAGAGGTGATTCCTTTAATAAAGGAGTTTATCAACCAATTAGTCTAAGT
TATATCTCATTACAAATTTACAGCTAACACACTATGCCACAATTATATAA
ACAGCAATTATTACATCTGAGTACTTCCAGACATTCTAATACAAACATCC
TTGAATGTGTACAACGGAAATTATTCTCGTACATGTAAAATAAAGCCTAG
AGAAGAAGCATAGCCATATAATTATGCCGCTTTTTAACATACCTCTTTTC
AGCACTTGTCACAACTATTTGCTCAATCCATTTTGACTACACCTATCTCT
AGATTTTCTCCCCCTCTCCAGCAATCTGGTTCTCATGTATATGTCGTCAA
ACC
TTTTCTTTTTTTTCCTTCCCCTTTCTTTTTTCTTTTTTTCCCCCTTTCCA
AAAAANNNNNCTAACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGTAATGAC
TTAAAGAGCTAGCTTTTGGCATCAATGATTTCTTTCCTCCTCACCTCCTC
TCTCTGTTCCTTTCACCTTGTCTCACATTTAATTTTTTTTGTTCCTTATC
ATTGTTTCTTTAACAAACAAACAAACAAACAAAGATTTATTTTTTTCCTG
CATGTGGGTACACTATAGCTGTCTTCAGATACATCAGAAGAGGGCATCAG
ATCCCATTACAAATGGCTGTGAGCCACCATACAGCTGCTAGGAATTGAAC
TTAGGACCTCTGGAAGACTAGCGTTTTTTATTTTGCTGAGTCATCTCTCC
AGACTTCATTATTTCTTAAGCATTAAGAGCTTTCCCTTTATAAAAAAAAT
AGTTTATGAGATTGTGGAGGATTCCTACATTTGAAAATTCTCCCTTTGTT
TCCCGCCTCCCCTTATCCCGGTATTTCAAATCCTAATACCTATTCCAAAC
CATTTAATTATATTTTAACGCTTGTATCCGCTTTGATTTTTCCATTTAAA
GGTACGGCACCACTCACAAAGAAGGCCTATATTTAATCCTTATTTCTATA
ATGTACCTGCACCTGATATTTCCAAAACACGTATTTCTTAGATATAATAC
AAATCTCGTTCACCCTTTCTATTTCACAACCTCTCCAATCAACTTATATT
TGTCAATTTTATTTTATTAATACCAATCTCTCCCCTACACCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_b02.g1 MSMg01no047_b02.g1 CHROMAT_FILE:
MSMg01no047_b02.g1 PHD_FILE: MSMg01no047_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:21 2005
         (200 letters)



>mm_chr13_105029358_105029957
          Length = 600

 Score =  354 bits (183), Expect = e-102
 Identities = 198/205 (96%), Gaps = 5/205 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgtaatgacttaaagagctagcttttggcatcaatgatttctttcctcctcacctcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgtaatgacttaaagagctagcttttggcatcaatgatttctttcctcctcacctcct 260

                                                                       
Query: 61  ctctctgttcctttcaccttgtctcacatttaattttttttgttccttatcattgtttct 120
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctctgttcctttcaccccgtctcacatttaattttttttgttccttatcattgtttct 320

                                                                       
Query: 121 ttaacaaacaaacaaacaaacaaa----gatttattttttt-cctgcatgtgggtacact 175
           ||||||||||||||||||||||||    ||||||||||||| ||||||||||||||||||
Sbjct: 321 ttaacaaacaaacaaacaaacaaacaaagatttattttttttcctgcatgtgggtacact 380

                                    
Query: 176 atagctgtcttcagatacatcagaa 200
           |||||||||||||||||||||||||
Sbjct: 381 atagctgtcttcagatacatcagaa 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 600
Length adjustment: 8
Effective length of query: 192
Effective length of database: 592
Effective search space:   113664
Effective search space used:   113664
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)