BAC Information

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BAC

Clone NameMSMg01-048M12
Chromosome13 (Build37)
Map Location 23,942,200 - 23,942,842
singlet/doubletsinglet
Overlap geneSlc17a3
Upstream geneV1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2
Downstream geneSlc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048M12.T7 (MSMg01no048_m12.b1)MSMg01-048M12.TJ (MSMg01no048_m12.g1)
ACCAG278457AG278458
length1,2901,757
length of high quality
(start - end)		644 (76 - 719)---
definitionCHROMAT_FILE: MSMg01no048_m12.b1 PHD_FILE: MSMg01no048_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:06 2005CHROMAT_FILE: MSMg01no048_m12.g1 PHD_FILE: MSMg01no048_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCAAACATTGGCGCTATAGACTCCTATGGGAGAGGATCCGCGGAATTC
TTTATTTTAGATTTTGACATTTGGAATGCTATCGTTATTTACCCTCTGCC
TGCTACTACTGCAAGAGAACACCCCAACTTGTGCTTTGTTTACAACATAG
ATTCTATGCTATTGGTATAGCATGCAGATGGGTAAGGGACAAGAGTAGAG
AAGAAGGTGAGGGTGAAGAGGAAGAAGACGTTCACTTAGGAGGCCAGGCT
TGAGGTAGATTGAGTGAAGGCAAGCAGACAGGAAAGAACATGACCTTGCT
TGGATAACGGAGTCTGTCTTCCCTTATAATCAAGGTAAAGGCAAACGTTT
AGGTGAAATGTACTGATTGGGTGGACCTGGTGGTAGAAAAGATACTCACT
TCCAGCTTTCTTTCCATTCACTCTGGAACTTGGAATTCTCTTTCAAAAGT
TGCCTTTCCTATTGTTAAAAGGCCAACCTGCGACAGTTCATTTAACTGTG
ACTGACAGCATTTGATCAAATGCCAAGTTTGATTGCTCACATTTAAATGA
GATAGCACAGACAATATGCTTCAGTGAACATGAATTTAAAAAAAATAAGA
TCCTAACAATTATTTCTACCTTGCAGTGTAAGTTAAAAAGAAATCCAAGC
AAAAGAGTAAATCTATAGGCCATAAATCTGATTGCACAAATGCCTGTAAG
TGCTGACTGCGAAATACACTGTTAATAAAGCCCAAGAGGGAAGAACTGTG
GCCAGCAAGCCACACCAGGACTATTCACAATGCACAGTCTGTAACTTGAG
GCATAGGTAAACAATGGAGAGACTCTGATACTTATATATATGTACTTTAT
CGATTAACCTTGGTTTATAGTGAAAATCTCCACTTCCCCTAAAAGAACAT
AATTAAATATTAGAGGGTTTTTTTTTCATTTATTTTGTAAGAAAATGGCC
TTAAAATTTTTTGAGTTTTCTATACCCTTTCTTTTATATTTCTTATTATT
GAATCTGTTTGTCCTCTCTCTGTGTTATTTATTTTCTTCCTTTATAATTT
TTCTAGTTTTTTCTCTCTATGTTATTCCTTCTTTCATTCTCTAATTCTTT
CTTTTTTCCTTTTTTTTTTCTTATCTCACTCTTTTTTCTGTTTATTTTAT
CTTTCTTATATTTCATTTTCCGTTCTTTCTATTCTATACTCTTTTCCTTC
TTCTATCCCTTTTTTTATTTTAGTATCTTGTCCTCTTATCTCTCTTCTTC
TTCTCTCTTTTATTTTTCTTCTTCAATTCTGTTTTTATTT

TTTTTTTTNTTNCGCATTGTGTNAGTCCGGTNCGGNCCGNCCGGTGCCCG
NTCGAACCATTTTAGGGNTGGAACACNTAATAGNNAAAGGNATCCGNCGG
GNNAACTTCATTAAGAGGAGNAGNNACACCCAANCNTAATGGGCAAGNCC
GGNTTCCATTTTTAGNCACCAGGCAAAGAGACTTTTCCCCCCCCACAAAA
ATTGGAGGGNTGCNNNNNNNCCCNNNAACATNGGTGCAAAGTAAAAGCCC
CAGGAAGAATCTCCCCCCAAAACGGGAAGGGAAGGAATTTTAGGGCCATT
TTTGTAAAAAAGATCTTTTTTCCCCCAAGGTCTTTGGGTTCTTCGGAAAA
CAAGGGAAAACCCCTTTTTTGAAAAAGGGGTTTATACAGGCCCAATTCCT
TCGGAAAAAAACCTTCCNNNNNNNNNNNNNNNNNACCAAAAAGGGTGGGA
TTTNNNNAAAAACCCCCCCGGGGTTTGGTTTGGAANNNNNNNNNNNNCNN
NNNNNCTCTTTTTCAGAGAGAAGAGGGGAGAAAAAACTCAATATAAAACA
AAATAATTGTGGTTTATTTTTTTTTTNNNTGGNNNNNNNNNAANNNNATT
AGTGNNNNNNTNNNNNNTTNCTTTTTTNNNTTCCCCCCCCCCNNNNTCCC
CTTTGTGGNNAAATCCCGGGGGCGCTTCTATGTGTTGTTGGGAAACNNNN
NTTTTTTTTTTTTTTTTTCTTCCACCAAAAAAAAAAAAGAGGTCTTTAAT
ATTTCTCCCCCAAGGGGTNNTTGTGGCCGCCCCCTNNTTCGGTTNNNTNT
ATTTTTTTCCCCCCCCANNNNNTTTTNNAAAAAAATCCNNTTTTTTTTTT
CNNNNNNNNNNNNNNNNNNANNNNNTNTTNTCCCTTCACCATANTTTATT
ATATAAAAAACTAAAAAATAATTCTCTCTCTTTCTAATATTATAATTTTA
TAAATAATTCTTTTTTNCTCCCAATGAAAAATGTTTTTTGTTGGGGNNNN
NGGGTGTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTCTTGGCTTTTNNNTNNNNNNNNNAAAAAAATCATTNNNN
NNNNATTTNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNT
NNTTNNTTTTTTTTTTTTTTTTAGTTNNTTTTTTTTTNNTTTTTTTTTTT
NTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTCTTTTTTTTTTTCCTTTTTTTNNTTTTTTTTTTTTTTTTTTT
TNTTTTTTTTTTTTTTTTTTTTNTTTTTTTNNTTTNTTTTTTNTTTTTTC
CCCCTTTTTTTTTTTTTTTTTCCTTTTTTCCCAAATTTATTTNNNNNNNN
NNNNNNCNTNTNTNTNNNNNNNNNNATNTTNNTTTTTTTTTTTTTTCTTT
TTTTCTTTTTTTTTNTTTTTTTCTTTTNNTTTTTTTTTTTTTTTNTTTTT
TTTTTTTTNNNTNTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_m12.b1 MSMg01no048_m12.b1 CHROMAT_FILE:
MSMg01no048_m12.b1 PHD_FILE: MSMg01no048_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:06 2005
         (644 letters)



>mm_chr13_23942000_23943042
          Length = 1043

 Score = 1168 bits (604), Expect = 0.0
 Identities = 634/644 (98%), Gaps = 1/644 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctatcgttatttaccctctgcctgctactactgcaagagaacaccccaacttgtgct 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||
Sbjct: 201 atgctatcgttatttaccctctgcctgctacta-tgcaagagaacaccagaacttgtgct 259

                                                                       
Query: 61  ttgtttacaacatagattctatgctattggtatagcatgcagatgggtaagggacaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 260 ttgtttacaacatagattctatgctattggtatagcatgcagatgggtaagagacaagag 319

                                                                       
Query: 121 tagagaagaaggtgagggtgaagaggaagaagacgttcacttaggaggccaggcttgagg 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 320 tagagaagaaggtgagggtgaagaggaagaagacgttcacttaggaggtcaggcttgagg 379

                                                                       
Query: 181 tagattgagtgaaggcaagcagacaggaaagaacatgaccttgcttggataacggagtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tagattgagtgaaggcaagcagacaggaaagaacatgaccttgcttggataacggagtct 439

                                                                       
Query: 241 gtcttcccttataatcaaggtaaaggcaaacgtttaggtgaaatgtactgattgggtgga 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtcttcccttataatcaagataaaggcaaacgtttaggtgaaatgtactgattgggtgga 499

                                                                       
Query: 301 cctggtggtagaaaagatactcacttccagctttctttccattcactctggaacttggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cctggtggtagaaaagatactcacttccagctttctttccattcactctggaacttggaa 559

                                                                       
Query: 361 ttctctttcaaaagttgcctttcctattgttaaaaggccaacctgcgacagttcatttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 560 ttctctttcaaaagttgcctttcctattgttaaaaggccaacctgggacagttcatttaa 619

                                                                       
Query: 421 ctgtgactgacagcatttgatcaaatgccaagtttgattgctcacatttaaatgagatag 480
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 620 ctgtgactgacagcatttgatcaaatgccaagtttgattgctgacatttaaatgagatag 679

                                                                       
Query: 481 cacagacaatatgcttcagtgaacatgaatttaaaaaaaataagatcctaacaattattt 540
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 catagacaatatgcttcagtgaacatgaatttaaaaaaaataagatcctaacaattattt 739

                                                                       
Query: 541 ctaccttgcagtgtaagttaaaaagaaatccaagcaaaagagtaaatctataggccataa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctaccttgcagtgtaagttaaaaagaaatccaagcaaaagagtaaatctataggccataa 799

                                                       
Query: 601 atctgattgcacaaatgcctgtaagtgctgactgcgaaatacac 644
           |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 800 atctgattgcacaaatgcctgtaagtgctgactgtgaaatacac 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1043
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1033
Effective search space:   654922
Effective search space used:   654922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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