BAC Information

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BAC

Clone NameMSMg01-048P16
Chromosome13 (Build37)
Map Location 25,349,615 - 25,399,580
singlet/doubletdoublet
Overlap geneNrsn1
Upstream geneLrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a
Downstream geneTpi-rs8, LOC214973, LOC666221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048P16.T7 (MSMg01no048_p16.b1)MSMg01-048P16.TJ (MSMg01no048_p16.g1)
ACCAG278597AG278598
length1,2111,195
length of high quality
(start - end)		742 (85 - 826)756 (75 - 830)
definitionCHROMAT_FILE: MSMg01no048_p16.b1 PHD_FILE: MSMg01no048_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:30 2005CHROMAT_FILE: MSMg01no048_p16.g1 PHD_FILE: MSMg01no048_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,349,615 - 25,350,356)(25,399,084 - 25,399,580)
sequence
NGCGTTATNNNNNNAACAATGGGCGCTAAGACTCCANAGGGAGAGGATCC
GCGGAATTCACAGTGTGTGCCAAGCCGGTTAATAGAGCCAGCAGCCAGCC
TCTGTGGCACAGCTGCTTTGGCACAGAGGACCCAATAATGACTACTGGAG
GCCAGAAGCAGTTAGGCATGGAGGAACAGCCTGGAGGGAAGGAGGCTGGA
TGGAGCCGGGCGTGAAGGAGCCATCTGTGATGGAGATCATTCAAAGCTCA
TAGGGAGTTTGAACTGGATTTTGATCGTTCTCTCTTTTTGAGGACTGCTG
TAGCATTCTCTGTAAGCCCTGAGCTCTGAGTAGCGAGGGATTGTGCCCAT
GACAGTTGCAGGGTCTCGTTCATTGTTACCTACCTACTCCAGCTACATTC
TGAGCTCTGCCAAGGGAAGCGTGATGTGAAACTGGTTTGGCTGTTTCTTC
AGGCCTGACTCTACCTATTACGCATAGTACCCCTTCACCTGAGTAATGAA
CTTACCCATCAGCCCATGTACTTTAGAGATTGTCCCCTCTAGCACACAGA
CAAAAGTAATGCCTTCCAAATTCAATAATTATTTTAGTTTCTACCATGAT
GCCCTGCTCCTGCAGATGTGCAGGGAGTCTCCACTGGGAGCAACTTCTCC
AGACTGCACCAGATAAACACTTCCTCCTGCTTCCCAAACTCTGTTCTCTC
ATTATTTACTGTAACCACTTTGGAAGGAAGATTTAGAATACTGATTGTAA
TAACCTGAGTCTATATCTACTTCCTCCATTGAACTGTAATTTGCTATATC
TTATGCAGAGGTAAGAATGGATCCTATTGNTCTATTGCACTTACCAGGTG
GTCTAGAGTCTGGACATTACATGTGTAAGATAAAGGGGAAATATTAAAAT
CCTTATGCAGTCCCTCATTTACTGGGAGTTCTTTATTTTCAGCCTATGGG
TGAATAGCCCCTAAGGAGTTTTGCGTTCCCCGAACCCCCCGTCAAGGCTT
TTGAGGTGTGGTAAAAAAATTATACTTTTTTTCTATGTAATGGATATCCC
TTGAAATAGGCTTTCACTTTTACTTGATTCCCCTGGCTTCCTATTTATTA
ATTCCATCTTCTGCCTTTTCTTGTTTGTCCTTTCTTCTCTCCTCTAATTT
GGTTCTTATTCTCTCCTTCTCTTTCCTTTTCTGATTCTCTTTTCCTCATC
TTATCTTCTTT

NGCTTTTTTNNNAAAGATGGNTAGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTTATTGTCTCTGTGATCCTGTGA
TTTTGGGATCCTGTGATCCTGAGATCCTGGCAGTGTCAGAGCTCCTGGAA
GTCAAGCTGCCTCTGGGCCCCTGAGATCCTGGTGTGACCTAGCTCCTGAG
ATCCTGGGATCCCGGGATTCCGGGATCCTGGGCATGTTAGAGTGCCTGGG
AATGGAGCTTCCTCTAGGTGTTATGGGACTGACTGCGAAGTTAGCACCCA
AGGTATGCTCAGGGCACTGGCCCAGACCAGAAGGAATCTGTGCCACTGGT
TGGTAGAGTTCCTGGGTGCCTGGATCTCACTGGTTTCAGTTACTTCTGGT
GTTGGGGCAGATATTGCGTCCTCCTCACTTCTGATCCTGTGATCCTGCAC
GCGTTAGAGCACCTGGAAGTGGAGCTTCCTCTGAGTTGTGGGACTGGCTG
AGGAGTTCACGCCCAAGGTCTGCTCAGGGCACTCTATCTCTTTATCTCTT
TCCTATCTCATCAATGCTTCTGCCTCTACCCCAGGCATACAACATTTAGA
TTCAAGAGTCTTTCTTCCTTCCACTCCTACCTTCATATCTCCTATTACTT
CTATCTAGAAATAATCTCCTGGCCCTTTCATCTGGTTAATTCTGATTCGT
TTTTTCAGGTTGGATGTCATTCATTCAGGAAAGGTTGCCCTATCTAAGTG
TGTCTTCACAGCACAAACCAACATTTGCATAACTTTGGACCCATACTCAT
CTGTCACTATCTTTGCTCAGAGCAGGTACAAGAACCATGGCCTGTGAGTT
CTGTGAATTTTTCTCTCATTTTTCAGATTAACCCAAGCACCCAGGACCCC
CCAACCATGCAGGTGTATAATTAATTTCCCCCATATACCTTAACCAAAAG
GCACTAAATATTACATGCTTTCCAGAAGGTTTATCCCCAGTTATCTTCTT
GAAAGATAAACCCCAACTCCCTAGGGAATTCTGCCAAGCCTAAAATTTTG
GTTGGTTTGGTTGGGTTAATTTAAAATCTCCCCGGTTCCGGGGGGATTTC
CCTTTTTTCATGGGGTATTTGGGCACCCCGGTCTCTGAAAATTTTTGAAA
TTTTTTTTGTCAAAGTTTTTTTGTATACCCTTATTTTTAATTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_p16.b1 MSMg01no048_p16.b1 CHROMAT_FILE:
MSMg01no048_p16.b1 PHD_FILE: MSMg01no048_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:30 2005
         (742 letters)



>mm_chr13_25349415_25350556
          Length = 1142

 Score = 1388 bits (718), Expect = 0.0
 Identities = 736/742 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagccagcagccagcctctgtggcacagctgctttggcacagaggacccaataatgacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 201 gagccagcagccagcctctgtggcacagctgctttggcacagaggaggtaataatgacta 260

                                                                       
Query: 61  ctggaggccagaagcagttaggcatggaggaacagcctggagggaaggaggctggatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggaggccagaagcagttaggcatggaggaacagcctggagggaaggaggctggatgga 320

                                                                       
Query: 121 gccgggcgtgaaggagccatctgtgatggagatcattcaaagctcatagggagtttgaac 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccgggcatgaaggagccatctgtgatggagatcattcaaagctcatagggagtttgaac 380

                                                                       
Query: 181 tggattttgatcgttctctctttttgaggactgctgtagcattctctgtaagccctgagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggattttgatcgttctctctttttgaggactgctgtagcattctctgtaagccctgagc 440

                                                                       
Query: 241 tctgagtagcgagggattgtgcccatgacagttgcagggtctcgttcattgttacctacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgagtagcgagggattgtgcccatgacagttgcagggtctcgttcattgttacctacc 500

                                                                       
Query: 301 tactccagctacattctgagctctgccaagggaagcgtgatgtgaaactggtttggctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactccagctacattctgagctctgccaagggaagcgtgatgtgaaactggtttggctgt 560

                                                                       
Query: 361 ttcttcaggcctgactctacctattacgcatagtaccccttcacctgagtaatgaactta 420
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcttcaggcctgactctacctagtacgcatagtaccccttcacctgagtaatgaactta 620

                                                                       
Query: 421 cccatcagcccatgtactttagagattgtcccctctagcacacagacaaaagtaatgcct 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccatcagcccgtgtactttagagattgtcccctctagcacacagacaaaagtaatgcct 680

                                                                       
Query: 481 tccaaattcaataattattttagtttctaccatgatgccctgctcctgcagatgtgcagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccaaattcaataattattttagtttctaccatgatgccctgctcctgcagatgtgcagg 740

                                                                       
Query: 541 gagtctccactgggagcaacttctccagactgcaccagataaacacttcctcctgcttcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gagtctccactgggagcaacttctccagactgcaccagataaacacttcctcctgcttcc 800

                                                                       
Query: 601 caaactctgttctctcattatttactgtaaccactttggaaggaagatttagaatactga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caaactctgttctctcattatttactgtaaccactttggaaggaagatttagaatactga 860

                                                                       
Query: 661 ttgtaataacctgagtctatatctacttcctccattgaactgtaatttgctatatcttat 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ttgtaataacctgagtctatatctacttcctccattgaactgtaatttgctatatcttat 920

                                 
Query: 721 gcagaggtaagaatggatccta 742
           ||||||||||||||||||||||
Sbjct: 921 gcagaggtaagaatggatccta 942


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 742
Length of database: 1142
Length adjustment: 10
Effective length of query: 732
Effective length of database: 1132
Effective search space:   828624
Effective search space used:   828624
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no048_p16.g1 MSMg01no048_p16.g1 CHROMAT_FILE:
MSMg01no048_p16.g1 PHD_FILE: MSMg01no048_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:30 2005
         (756 letters)



>mm_chr13_25398425_25399580
          Length = 1156

 Score =  938 bits (485), Expect = 0.0
 Identities = 494/497 (99%)
 Strand = Plus / Minus

                                                                        
Query: 260  gaatctgtgccactggttggtagagttcctgggtgcctggatctcactggtttcagttac 319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1156 gaatctgtgccactggttggtagagttcctgggtgcctggatctcactggtttcagttac 1097

                                                                        
Query: 320  ttctggtgttggggcagatattgcgtcctcctcacttctgatcctgtgatcctgcacgcg 379
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1096 ttctggtgttggggcagatattgcgtcctcctcacttctgatcctgtgatcctgcacgtg 1037

                                                                        
Query: 380  ttagagcacctggaagtggagcttcctctgagttgtgggactggctgaggagttcacgcc 439
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1036 ttagagcacctggaagtggagcttcctctgagttgtgggactgactgaggagttcacgcc 977

                                                                        
Query: 440  caaggtctgctcagggcactctatctctttatctctttcctatctcatcaatgcttctgc 499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976  caaggtctgctcagggcactctatctctttatctctttcctatctcatcaatgcttctgc 917

                                                                        
Query: 500  ctctaccccaggcatacaacatttagattcaagagtctttcttccttccactcctacctt 559
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  ctctaccccaggcatacaacatttagattcaagagtctttcttccttccactcctacctt 857

                                                                        
Query: 560  catatctcctattacttctatctagaaataatctcctggccctttcatctggttaattct 619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  catatctcctattacttctatctagaaataatctcctggccctttcatctggttaattct 797

                                                                        
Query: 620  gattcgttttttcaggttggatgtcattcattcaggaaaggttgccctatctaagtgtgt 679
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  gattcgttttttcaggttggatgtcattcattcaggaaaggttgccctatctaagtgtgt 737

                                                                        
Query: 680  cttcacagcacaaaccaacatttgcataactttggacccatactcatctgtcactatctt 739
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 736  cttcacagcacaaaccaacatttgcatgactttggacccatactcatctgtcactatctt 677

                             
Query: 740  tgctcagagcaggtaca 756
            |||||||||||||||||
Sbjct: 676  tgctcagagcaggtaca 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 756
Length of database: 1156
Length adjustment: 10
Effective length of query: 746
Effective length of database: 1146
Effective search space:   854916
Effective search space used:   854916
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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