BAC Information

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BAC

Clone NameMSMg01-050H20
Chromosome13 (Build37)
Map Location 117,138,926 - 117,139,579
singlet/doubletsinglet
Overlap geneEG668276
Upstream geneLOC100041023, LOC547402, LOC100041045, EG623174, Isl1
Downstream geneGm280, LOC100041169, Parp8, LOC668288, LOC623312, Emb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050H20.T7 (MSMg01no050_h20.b1)MSMg01-050H20.TJ (MSMg01no050_h20.g1)
ACCAG279555AG279556
length1,1501,233
length of high quality
(start - end)
542 (130 - 671)650 (76 - 725)
definitionCHROMAT_FILE: MSMg01no050_h20.b1 PHD_FILE: MSMg01no050_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:52 2005CHROMAT_FILE: MSMg01no050_h20.g1 PHD_FILE: MSMg01no050_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTTNNGNNNCCACTGGGCGCTATAGACTACTATAGGGAGAGGATCCG
CGGAATTCTTTGTTTAGCTTTGAGCCATTTATACCCCCGGGGNNANNNGA
NNNNCNGGAGGGNACCTTTTTAAGTTCTTTATATATATATTGGATATTAG
TCCCCTATCTGATTTGGGATAGGTAAAGATCCTTTCCGAATCTGCTGGTG
GCCTTTTTGTCTTATTGACAGTGTCTTTTTGCCTTGCAGAAGCTTTGCAG
TTTCATGAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTG
CTGTTCTATTCAGGAATTTTTCCCATGTGCCCATATGTTTGAGGCTTTTC
CCCACTTTCTCCTCTATAAGTTTCATTGTCTCTGGTTTTATGTGGAGTTC
CTTTTTTTTTTTAGATNTGACCTTAGCACAAGGAGATAGGAATGGATCAC
TTCCAATTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTG
AAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTTGAAGAT
CAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTTTTCC
ATTGGTTTACTTGTCTGTCCCTATACCAGTACCATGCAATTTTTATCACA
ATTGCTCTGTAGTAAAGCTTTAGATCCGGCCTGGCGATTCCACCAGATGT
TCTTTTATCCCTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCC
CGATGAATCCGCAGATTGCTCTTCCTAATTCTTTGATTAATTGAGTTGGA
ATTTTTGATGGAGATTGCCTTGAATCTGTAGATTGCCTTTTGGCAAGAAC
CCCATTTTTACAATCTTGATCCTGCCCATCCATGAACTTGGCAGAACTTT
CCCTCCTCTGAAATCCTCTTTAATTTCCTCCTCCAAAAATTTGAGTTCCT
TACATACCGATCTTTTCCCTCCCTTATTAAAGTATCCCCCACAATTTTCC
ATTATTTGGGACATATTGAAAGGGCGTTGTTTCCCTATTTTCTTTTCCAC
CCTGTTATTCCTTTGGTATAAAAACGCCTTTGACTTGTTTGGACTTATAT
TTTATTCCGGTTAACTTCCCCAAATCGTGTTTTCAGGTCTTAGAATTCTC

TTCNNTNNAAGATTGGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAAGGTTTTGAATTAAGGATGAAGA
ATATGATGTGTTGACTCCTAGCTCTTGAATGTAGACACTATCCTCATATT
ATTCACGTTGCTTCTCTGGTGGTAGAGTCTGCAGGCTTTATTCCATTGTA
ATCTTGTCCCTGGATTTCCTTGTTATTAGAGTGCTTTAAACTTGGTACGC
TGAAATTAGTGCTTAAGATGTGGCTAAAGTGAAGTTAATACATGTACTAG
AGAGTTACCCTTGACCAGGTGGACAGATCTTTACTCCTTACCTCAAAACA
TTCCCAGATCTCCCCATTATCTCTTGGCCAAAGTTTAAACTTGACAGTGT
AGAGGAAAAAAAAAAAAACTCAGACAAACATGCCCTCAGTCATGAACCCT
CAGGGTTTGTTTTGTTACCCATCTCCCTCCTATTTTGTGTCATTTTCATC
CCTTTTTCTCTCTCTTTTTTTCTTCTTCAAGTTTTGTTCACTTACAAAGA
ATTAAGTTTCATTATGGCATTTCTCACACAGAATTTGTCTTGCCCGGTGT
ACTGTCTTCTCACATCTGACTCTTTGAACCTCTCAGTATCTTTTGGTCCA
CTCTCCTTGCTTTCTACCTGGACTTGCAGTGCATACCTTTCCAAATCTGA
GGGAGCAATTGTCTCTTCCTTTGCTTTAGGCTTGGGCTTCTTCTCACTCC
CATGCCTCCTCACGCTTCTCTGTCCAGTGTGTATCACCACATATTTTAGA
CCCCCCCTTTCCTATCATGCAGTTGTTGTTAACCATGTCTAGAGCACAGA
ACTGAACACTTTGAGAAAGGTTTTATTATGACTTCCGGGTTCCTATGAAA
AAGAACAAGAATTGCCCTATGTTAAGTTTTTCAGGAAACCACAGGACCCA
ACTTTTAAATTATACCAATTCCCTGGCAAGGGTTTTTTGAAAAGCTCTAA
TTTTAATTCCCTTTTGTTTTGGAATTATTTTCTGGCCCAAACACATACTT
TGATTCCTGAAAAACCTTAGGGGGGAAAACCTAATCCTACCCCCCCCTTT
TTTTTAATTAAAAAGATTTGAATTCCGTTTTGGATTCAAATTTATAACCC
GGGTGTGAACTCCATTCTGACATTTATATGGGCCATTGGGCCTCGTGCCC
TCTATATATTTTATCTATAATCAAGCTCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_h20.g1 MSMg01no050_h20.g1 CHROMAT_FILE:
MSMg01no050_h20.g1 PHD_FILE: MSMg01no050_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:53 2005
         (650 letters)



>mm_chr13_117138726_117139779
          Length = 1054

 Score = 1191 bits (616), Expect = 0.0
 Identities = 643/654 (98%), Gaps = 4/654 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaggttttgaattaaggatgaagaatatgatgtgttgactcctagctcttgaatgtaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaggttttgaattaaggatgaagaatatgatgtgttgactcctagctcttgaatgtaga 260

                                                                       
Query: 61  cactatcctcatattattcacgttgcttctctggtggtagagtctgcaggctttattcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactatcctcatattattcacgttgcttctctggtggtagagtctgcaggctttattcca 320

                                                                       
Query: 121 ttgtaatcttgtccctggatttccttgttattagagtgctttaaacttggtacgctgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtaatcttgtccctggatttccttgttattagagtgctttaaacttggtacgctgaaa 380

                                                                       
Query: 181 ttagtgcttaagatgtggctaaagtgaagttaatacatgtactagagagttacccttgac 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 381 ttagtgcttaagatgtggctaaagtgaagttaatacatgtactagagagttaaccgtgac 440

                                                                       
Query: 241 caggtggacagatctttactccttacctcaaaacattcccagatctccccattatctctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggtggacagatctttactccttacctcaaaacattcccagatctccccattatctctt 500

                                                                       
Query: 301 ggccaaagtttaaacttgacagtgtagaggaaaaaaaaaaaaa----ctcagacaaacat 356
           |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||
Sbjct: 501 ggccaaagtttaaacttgacagtgtagaggaaaaaaaaaaaaaaaaactcagacaaacat 560

                                                                       
Query: 357 gccctcagtcatgaaccctcagggtttgttttgttacccatctccctcctattttgtgtc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccctcagtcatgaaccctcagggtttgttttgttacccatctccctcctattttgtgtc 620

                                                                       
Query: 417 attttcatccctttttctctctctttttttcttcttcaagttttgttcacttacaaagaa 476
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attttcatccctttctctctctctttttttcttcttcaagttttgttcacttacaaagaa 680

                                                                       
Query: 477 ttaagtttcattatggcatttctcacacagaatttgtcttgcccggtgtactgtcttctc 536
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaagtttcattatggcatttctcaaacagaatttgtcttgcccggtgtactgtcttctc 740

                                                                       
Query: 537 acatctgactctttgaacctctcagtatcttttggtccactctccttgctttctacctgg 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 741 acatctgactctttgaacctctcagtatcttttggtccactctccttgctttctatctgg 800

                                                                 
Query: 597 acttgcagtgcatacctttccaaatctgagggagcaattgtctcttcctttgct 650
           ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 801 acttggagtgcatacctttccaaatctgagggagcaattgtctcgtcctttgct 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1054
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1044
Effective search space:   668160
Effective search space used:   668160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)