BAC Information

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BAC

Clone NameMSMg01-051C04
Chromosome13 (Build37)
Map Location 45,723,738 - 45,724,001
singlet/doubletsinglet
Overlap geneAtxn1
Upstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr
Downstream gene5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051C04.T7 (MSMg01no051_c04.b1)MSMg01-051C04.TJ (MSMg01no051_c04.g1)
ACCAG280000AG280001
length1,3231,409
length of high quality
(start - end)
264 (131 - 394)34 (76 - 109)
definitionCHROMAT_FILE: MSMg01no051_c04.b1 PHD_FILE: MSMg01no051_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:23 2005CHROMAT_FILE: MSMg01no051_c04.g1 PHD_FILE: MSMg01no051_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCGCGCATTGGGCGCTAAGACTACTAAGGGAGAGGATCCGCGGAATTCC
CATCCGCATGTGTTACCTTTTGGTCAGAGTCAGAGCCTGGGCCCTGGTCA
CCCGAACTTTACAGGCCCGGCCATCCCCCCTCATTAGGCCAATTAAAGGC
ACAATCAATAGTGAAAAGCAGATTGGTTCAATGTGGCCACATTGGGAAGA
GGAACAAAGAAGCCCAGTGACACCTTTCCAAGTCTGTCTTGGGGTCTTGG
CAAAAGGCATGCATAAATGCAGCTCCAGTCTCTAACCCTAACAATGTCGT
AATACGTACTCACTGAGGAATTCCACTCAGAGGAGAAATGACAGGAGGGC
TTCCGACCCAGGCCACCTGCGAAGTCCGACAATGGCTTGGGAATGGTTTT
TTTAGCCCCAAAAACAAGTGCCTGTGTGGTCCAGGCATCTTAACCCAGCA
TTTTACTGCACTTGTGAATGCAGATAGAGGAGAAAAACCTGAAGTTATAT
GCATACCTGAGAGAGAGACATCGAGAGACTATGAGAGAGATACTGATACA
TATCATTATTATTTTCACTTCCTTTTCCTTTTTTTTTTCCTTCCTTTACT
ATTTCCTATCTTTATTTTTTTTCTTATCTTTCATCTCCTATTTTTTTCCC
TTCCTCTATCCCTTCCTTTTCTTCCCTTTCTTTTCTTTCTTTCTTTTTTC
TTTTTTTTCCATCTTTTCCTCTCTCTTCCCCTTCTCATTTTTTTGATATT
ATTTTATTTTTTTTACTCTTTTTTTTCTCTTTTTTTTTTTTTTCTTTCTT
TCTTTTCTTTTCTTTTTTTTCTTACCTCTTCTTTTTTTTCTCTTTTTCTT
CTCTTTTCTTTCCTATTTTCTTTCCTTTTTCATTTCTCCTTCTCTCTTTT
TTTCTTCTTCTTTTCCTCTTTTTTCTTTCTTTCCCATCTATCTTCTTTTT
CTTTTTTCTTCTTTTTCTTTCTTTCTCCTCTTTTTTCCGTTTTTTTTTAT
TCTTCANACCTAGTTAATGTTTTAAATTTAGTTAATTAATTAATTTTATA
TATTTTTTTTTTAATTTATTAATATTTTTTTTTTTCATTTTTTTTTTTCT
TTTTTTATTTTTTTATTTTTTTTCCTTTTATCCTTATATCTTTGTTTTTT
TAATTTTTATTCTCTCTTTCCTTATTCTCTCGTCCCTTCTTCATCTTCTC
TTCTCTCTATCACTNTTTCTCTTTATCATTTCTCTCTTTCCTTCTTATTC
TCCTCTTTTCTTTCCTATTTTCTTCTTCCTTCTATTTTTCTGATCTTTCC
CCCTCTTTTTTTTTTTTTTTTTT
CCCCCAGATAGGAGTCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTATTCCTAGTCACTCCCATTCTCGGGGTGTAA
TAGTGGGCCTGATGAGCAAGCAACGAACCCCCAGCTGTCACGCCATATCA
GGTGCTGAAACGTCACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGG
TTTGGGATCTTCCTGAGAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATT
CTGCTTTGTTGCGTCTTTCTTGCCGGTCGAGCGTTATGCCATATTATATG
TCTATTCTCACTGCTTATCTGATCTTGATTTATCTCTCTTATACGCTATA
TACCGATATTATTATGCTTTTCTTTTATATTTCTTGAATATTTACTTTTT
TTTTTTTCTTGTTTCTTCCCTCATATTTTCTGTTCTTCATTTATTCCCCA
TCTCTTTTTTTCTCCCCCCTCCTTTTTATATTTTCTCGTTCTCTCAAAAC
TAGAATCTTTTTTTTTTTCTTTTTTTATCTTATTCTTTTCTTCTTCTTTT
TTCTTTTCTTTTTTTTGATTTCTTCATCTTTTTCTTTTTTTTTTTTCTTT
CTCTTCCTTTCCTCTTTCTTTTTATTTTTTTACTCTTTCTCTCCTTTCTT
CTTTTTATCTTTATTCTTCTTCTATCCTCTTTCTTTCTTATTTCTTTTAT
TTTCATCCCTCTTTTTTTTTTCCCTTTTTTTTTCTCTTCCTTTTTTTATT
TTCTCCCTCATTTTTTTTATTTTCCTTTCTCTTTCTTTCTTTATTCTTTT
TTTTATTCCTTTCTCTCTTTATCTTTTTTTTCCTTTTCTTTCCTTTTTTT
CTTCTTTTTCTTTTTTTTTTTTCCTCTTCTTTTCTTTTTTTCATCATTTT
TTCACTTATCATTATCACTCTTTTTTATTCTTCTCTTTCTTTTTCCTTTT
TTCTTTTATATTTTTCCCTATCTTCTTTCTCTTTCCTTTTCATCTCTCTT
CTCTTTCTTTCCCTCTTCTCCCTTTTATTTTTTTCTTTCTTCTTTTATTT
TTTTTCTCTCCACTTATCTTTTTATTTATTATATATATTATTTTTTTTAT
TTTATTTATATTTTATTTACTTTTTTACTATCTTTCATCTCTTTCAATTT
CATTTCTTTCTCTTTCTCACTCTTACTATTATTTTTCTTCTTCTACCTTT
CTCCTCTTCTTCCTCTATTTCTTCACTCTTCTTTCTCTATCTTTTATCCT
CCTTTTTTTTTTACTTTTTTCCTTCTTTCTCTTTTTCCCCTCTTATCTAC
TATTCCCTCTTCTTTTCTTTTCCTCTTATTCTCTTCCTCTCTTTTTCTTT
TCTCTCTTCTTTCTTTCTTCTTTTCCTATCTTTATCTTACTATTTCTTCA
TTCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_c04.b1 MSMg01no051_c04.b1 CHROMAT_FILE:
MSMg01no051_c04.b1 PHD_FILE: MSMg01no051_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:23 2005
         (264 letters)



>mm_chr13_45723538_45724201
          Length = 664

 Score =  472 bits (244), Expect = e-137
 Identities = 259/264 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattaggccaattaaaggcacaatcaatagtgaaaagcagattggttcaatgtggccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tcattaggccaattaaaggcacaatcaatagtgaaaagcagattggttcaatgtggccac 405

                                                                       
Query: 61  attgggaagaggaacaaagaagcccagtgacacctttccaagtctgtcttggggtcttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 attgggaagaggaacaaagaagcccagtgacacctttccaagtctgtcttggggtcttgg 345

                                                                       
Query: 121 caaaaggcatgcataaatgcagctccagtctctaaccctaacaatgtcgtaatacgtact 180
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 344 caaaaggcgtgcataaatgcagctccagtctctaaccctaacaatgtcgtaatacgtatt 285

                                                                       
Query: 181 cactgaggaattccactcagaggagaaatgacaggagggcttccgacccaggccacctgc 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 284 cactgaggaattccactcagaggagaaatgagaggagggcttccgacccaggccatctgc 225

                                   
Query: 241 gaagtccgacaatggcttgggaat 264
           |||||| |||||||||||||||||
Sbjct: 224 gaagtcagacaatggcttgggaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)