Query= MSMg01no052_g06.b1 MSMg01no052_g06.b1 CHROMAT_FILE:
MSMg01no052_g06.b1 PHD_FILE: MSMg01no052_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:00 2005
(480 letters)
>mm_chr13_24633263_24634142
Length = 880
Score = 530 bits (274), Expect = e-155
Identities = 295/302 (97%), Gaps = 3/302 (0%)
Strand = Plus / Plus
Query: 9 tcagaatttgatcccactgtataacggtttagaggtacatgctagctgcaagtgcaagtc 68
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcagaatttgatgccactgtataacggtttagaggtacatgctagctgcaagtgcaagtc 60
Query: 69 ctgatatgaaatattaaatatgcaattaaaaattggattaatcattaccaaaataccaga 128
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 61 ctgatatgaaatattaaatatgcaattaaaaattggattaattattaccaaaataccaga 120
Query: 129 ggagttgttagcaactttagaaaaggattcatgaaatccctcgctgtaaatgagaactct 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggagttgttagcaactttagaaaaggattcatgaaatccctcgctgtaaatgagaactct 180
Query: 189 gtatggaagcatgtgtatccgtgtctgtatggaagcatgtgtatccctgtctggtatgga 248
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 181 gtatggaagcatgtgtatccgtgtctgtatggaagcatgtgtatccgtgtctg-tatgga 239
Query: 249 agcatatgtatccgtgtctggtatggaagcatgtgtatccgtgtctggtatggaagcatg 308
||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 240 agcatgtgtatccgtgtctg-tatggaagcatgtgtatccgtgtctg-tatggaagcatg 297
Query: 309 tg 310
||
Sbjct: 298 tg 299
Score = 516 bits (267), Expect = e-150
Identities = 292/309 (94%), Gaps = 14/309 (4%)
Strand = Plus / Plus
Query: 186 tctgtatggaagcatgtgtatccgtgtctgtatggaagcatgtgtatccctgtctggtat 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tctgtatggaagcatgtgtatccgtgtctgtatggaagcatgtgtatccctgtctggtat 445
Query: 246 ggaagcatatgtatccgtgtctggtatggaagcatgtgtatccgtgtctggtatggaagc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggaagcatatgtatccgtgtctggtatggaagcatgtgtatccgtgtctggtatggaagc 505
Query: 306 atgtgcgtatttctacatgtctggtggcaaacttgagtttgcattcttcaaaaacatact 365
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 506 atgtgcgtatttctacatgtctggtggtaaacttgagtttgcattcttcaaaaacatact 565
Query: 366 cttgtgattttgctagcattacctgttttctttttctttttcttttt------------- 412
|||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 566 cttgtgattttgctagcactacccgttttctttttctttttctttttctttttttctttt 625
Query: 413 -ttattagatattttcttcctttacatttcaaatgctatccccaaagccccctataccct 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tttattagatattttcttcctttacatttcaaatgctatccccaaagccccctataccct 685
Query: 472 cccccacac 480
|||||||||
Sbjct: 686 cccccacac 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 2
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_g06.g1 MSMg01no052_g06.g1 CHROMAT_FILE:
MSMg01no052_g06.g1 PHD_FILE: MSMg01no052_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:00 2005
(452 letters)
>mm_chr13_24788677_24789528
Length = 852
Score = 818 bits (423), Expect = 0.0
Identities = 444/451 (98%)
Strand = Plus / Minus
Query: 1 tttactctcctctcaagataattaaaggtgacgtttatttttcagacgaagagcagagga 60
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 547 tttactctcctttcaagataattaaaggtgacatttatttttcagacgaagagcagagga 488
Query: 61 tccctcatatgtatgtgtacttggctgtgtattctcttccatataatatgtaattcataa 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 487 tccctcatatgtatgtgtacttggctgtgtattctcctccatataatatgtaattcataa 428
Query: 121 aaataggttgcctaggacatttctatgagttccagggcttgtttctctagagcagggcgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aaataggttgcctaggacatttctatgagttccagggcttgtttctctagagcagggcgg 368
Query: 181 aatggacaaaaagcagcagctatgacaacgccgttggctcaaatccttctgagtccctga 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 367 aatggacaaaaagcagcagctatggcaacgccgttggctcaaatccttctgagtccctga 308
Query: 241 gtgctggcttttgcaagtctgaggtcagtggtaaactgaaagcacccttctttccttccc 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtgctggcttttgcaaatctgaggtcagtggtaaactgaaagcacccttctttccttccc 248
Query: 301 ttttctttgttcccataggagctcagcccctgagctgacgtagagtggaggatgaccttg 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 247 ttttctttgttcccataggagctcagcccctgagctgatgtagagtggaggatgaccttg 188
Query: 361 accttcccgtccccttgcctgacttccggagtgcaaggttataggtgtaccagcacatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 accttcccgtccccttgcctgacttccggagtgcaaggttataggtgtaccagcacatct 128
Query: 421 ggttcaggtggcgctgagtttacaatccagg 451
|||||||||||||||||||||| ||||||||
Sbjct: 127 ggttcaggtggcgctgagtttagaatccagg 97
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
