Query= MSMg01no052_k19.b1 MSMg01no052_k19.b1 CHROMAT_FILE:
MSMg01no052_k19.b1 PHD_FILE: MSMg01no052_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:21 2005
(674 letters)
>mm_chr13_71475242_71476321
Length = 1080
Score = 1178 bits (609), Expect = 0.0
Identities = 658/677 (97%), Gaps = 6/677 (0%)
Strand = Plus / Minus
Query: 4 ggaattcattatttttgctttcttc-aatccataaacatgctaaaaccaccttttcagga 62
|||||| |||||||||| ||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 821 ggaatttattatttttgttttcttcaaatccataaatatgctaaaaccaccttttcagga 762
Query: 63 gctaacatcaccatccttcactgctgtgcaccttgttcctccaaaagtacacctaccgac 122
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 761 gctaccatcaccatccttcactgctgtgcaccttgttcctccaaaagtgcacctaccgac 702
Query: 123 agtacatgtcatcattccaacccatgctgagagaaatgaacaagacctcaggagacaaaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 agtacatgtcatcattccaacccatgctgagagaaatgaacaagacctcaggagacaaaa 642
Query: 183 ggagtggacagtaaactgacttagtt-----aaaaactggccattagaaaagacaagatg 237
||||||||||||||||| |||||||| ||||||||||||| | |||||||||||||
Sbjct: 641 ggagtggacagtaaactcacttagttaaaaaaaaaactggccatcataaaagacaagatg 582
Query: 238 gagtgatggaaagatgaaataccaagaaagtctattggaatctgattttgatgatgacca 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gagtgatggaaagatgaaataccaagaaagtctattggaatctgattttgatgatgacca 522
Query: 298 ggggaactgctcactacttcagctcatgagattgctgaagaaaactaggtccttcatgct 357
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ggggaaatgctcactacttcagctcatgagattgctgaagaaaactaggtccttcatgct 462
Query: 358 gcttgccaactcagagtgaacagagcaaatcagtttggaagtctctttccatgcaaaacg 417
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gcttgccaactcagagcgaacagagcaaatcagtttggaagtctctttccatgcaaaacg 402
Query: 418 ggcattgtaattcaagaaatcaaaggtggcagacagttatttcctagcttaaaattgaga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ggcattgtaattcaagaaatcaaaggtggcagacagttatttcctagcttaaaattgaga 342
Query: 478 tgagcagcaaaagaaaattatcgttatagagcgattatcagaaattgtccctcatagaaa 537
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgagcagcaaaagaaaattatagttatagagcgattatcagaaattgtccctcatagaaa 282
Query: 538 tattattcaaaatatgtgagcaggtcctttaaaagtttaggcatttttagtgatcattat 597
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tattactcaaaatatgtgagcaggtcctttaaaagtttaggcatttttagtgatcattat 222
Query: 598 gtctcaacttgggacaagtggctggagagatggctcagtggttaagaacactgactgttc 657
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 gtctcaacttgggacaagcggctggagagatggctcagtggttaagaacactgactgttc 162
Query: 658 ttccagaggtcctgagt 674
|||||||||||||||||
Sbjct: 161 ttccagaggtcctgagt 145
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1080
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1070
Effective search space: 710480
Effective search space used: 710480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_k19.g1 MSMg01no052_k19.g1 CHROMAT_FILE:
MSMg01no052_k19.g1 PHD_FILE: MSMg01no052_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:21 2005
(631 letters)
>mm_chr13_71347522_71348552
Length = 1031
Score = 1189 bits (615), Expect = 0.0
Identities = 627/631 (99%)
Strand = Plus / Plus
Query: 1 actctatgttcttggtcttatcctttgcattaccctttgtcttaggcttgacccttttta 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctatgctcttggtcttatcctttgcattaccctttgtcttaggcttgacccttttta 260
Query: 61 ttacacagtgatatttagacaataggacctgggtgctagtgtgctttctgctgctgggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacacagtgatatttagacaataggacctgggtgctagtgtgctttctgctgctgggta 320
Query: 121 gccagcgagtgcgtagcccctcatctattttcagaggtcatgtgtgagctcacactcaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccagcgagtgcgtagcccctcatctattttcagaggtcatgtgtgagctcacactcaag 380
Query: 181 gccgcaaacagtaagcagacataggtttctagatatggtggttcaggttggcactgaccc 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccgcaaacagtaagtagacataggtttctagatatggtggttcaggttggcactgaccc 440
Query: 241 ctatcttttcatgtggcttctccattaaagacatgcaacccccatcctcaccagcaatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatcttttcatgtggcttctccattaaagacatgcaacccccatcctcaccagcaatct 500
Query: 301 tgaacaagcagctgagtgaattctccatttgtttttcaagcactagatccttgactaaag 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 tgaacaagcagctgagtgaattctccatttgtctttcaagcactagatccttgactaaag 560
Query: 361 cccctagcatgccaaagcatcattgttggattatattgaagttcttaattataaaaatga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccctagcatgccaaagcatcattgttggattatattgaagttcttaattataaaaatga 620
Query: 421 cttggttagcgttagcactcttgtgttctgtaggaggcatttccaggccccattctctac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttggttagcgttagcactcttgtgttctgtaggaggcatttccaggccccattctctac 680
Query: 481 cacagacttaatataagaagcattaaatatgagtctcttctgtagaatgctataaacccg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacagacttaatataagaagcattaaatatgagtctcttctgtagaatgctataaacccg 740
Query: 541 tgtttgagactgaaaatacaaatatttttatatcttcattttataagacttttataattt 600
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 741 tgtttgagactgaaaatacaaatatttttatatcttcattttataagacttatataattt 800
Query: 601 taaaattttgaccctcccagctggaaaatgt 631
|||||||||||||||||||||||||||||||
Sbjct: 801 taaaattttgaccctcccagctggaaaatgt 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
