BAC Information

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BAC

Clone NameMSMg01-052K20
Chromosome13 (Build37)
Map Location 22,048,402 - 22,049,018
singlet/doubletsinglet
Overlap geneZfp184
Upstream geneAoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634
Downstream geneGm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052K20.T7 (MSMg01no052_k20.b1)MSMg01-052K20.TJ (MSMg01no052_k20.g1)
ACCAG281103AG281104
length716715
length of high quality
(start - end)		616 (40 - 655)563 (68 - 630)
definitionCHROMAT_FILE: MSMg01no052_k20.b1 PHD_FILE: MSMg01no052_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:22 2005CHROMAT_FILE: MSMg01no052_k20.g1 PHD_FILE: MSMg01no052_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTCTTCAGGGCCCTAGGCTAAGCCTCTCCTATTTGTCCTGAATTTAAATC
ACCATTCTTAAAATTTTTTTCTTTGCTGTTTATTAACAGGGAATCTCAAT
TCAGAATGTATCCTTCAGAGTGAGTCCTTTTCTTTGTACCCTTGGTGGTC
TCAGGTTACCCCCCCTTTTTTTTTTTAATCGATGGTTTATTTGCCTGCCT
CATTTGGCAGGACACATCTTATGAGCAGAAGTGTCCATTGTTGTACACTG
CTTGGCTGCAGATGTGTCCACAGGAGGATATTAGGACCTGGGAGCCATAA
GATCAAAAGCCTGAGCAGAAGTTCAGTCCCTCTCCATTTGAGGTTCTTGT
TCTCTTTGGTGTGGCAGGGGTTTCGATGATGAGCACTGTGCTAGTGGCTG
TGTAGTCATCCTGCAAGGTGAAGTGCTGGCCTTTCTCTAAGAACATGGGC
TACCACAAGCTTAGACTAAGCTTCAGGTCCTCCAGGCATGGCAGGTTCCT
TAACTAGAGGCAAGATAACGTGATAGGCTATGTCCCAAGTCAGGAAGAAT
ATAACAGGTATAAATTGAGACACCCTCCTCCTTGCTTAGGATGTAAAACT
GGACATCCACCCTTTGGTGGGGTTGGATAGATTCTGGCTTCACCATGACC
AAACCATGCGTTGGAG

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTCCCTTTACCCACTTAGGATCTTTCCACTTTC
CCCCTTAGAAAGCTTTCATAGGAAACTTTTTACAATTTGGTAATAAACTC
TATAATCACTTCTCTAAGTGTCTACTCTTCCTGCGACTTCCAACTTGCAG
GCTGAAAGATAGAGCCCAGTAGTTCCTGCTGAGATAGAACAAAGGCTGCA
TTGCTTAATCCTCCCCGTTAGGCTGCAGATGTTAATCGCCTAAACCAGCA
GTCTTTTACTCTCAGAAAGAACATAAAAGTTTTTAGGACCTTTTAGAAGT
TATCATCAACATTTCAGTATAATTAGAGAGCTAGGAAGCTCCAAGACCCT
CAGACTTTAAAGCCATCACCAGAGTCCTACTCTGTCACTCCACCACTACC
CTGGCCCAGGCTGGGAGTCTCCCTGCATTTGACCTTGAAAGAAATCTGTA
GAGGGCTGACTTGTGGGAAAGAAGGATGTGGGCTCCTGTCACTCTGAGCA
GGGACAGTGGCAGGATTCAGGGAGAAGATAGTGTATCATTTCCTAAGTGC
AATCCAGAATTGTCTCAGTGTCCACAAGGACAGTGTGTGTGGTCACTGTG
CGTGATCTGCTCCTTACCAGGACAAGCAGGGGTAGGAGACAGAGGCACCT
TCAGTGCAGCCTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_k20.b1 MSMg01no052_k20.b1 CHROMAT_FILE:
MSMg01no052_k20.b1 PHD_FILE: MSMg01no052_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:22 2005
         (616 letters)



>mm_chr13_22048199_22049218
          Length = 1020

 Score = 1129 bits (584), Expect = 0.0
 Identities = 608/618 (98%), Gaps = 6/618 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttcttcagggccctaggctaagcctctcctatttgtcctgaatttaaatcac 63
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttcttcagggttctaggctaagcctctcctatttgtcctgaatttaaatcac 263

                                                                       
Query: 64  cattcttaaaatttttttctttgctgtttattaacagggaatctcaattcagaatgtatc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cattcttaaaatttttttctttgctgtttattaacagggaatctcaattcagaatgtatc 323

                                                                       
Query: 124 cttcagagtgagtccttttctttgtacccttggtggtctcaggttaccccccc----ttt 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||
Sbjct: 324 cttcagagtgagtccttttctttgtacccttggtggtctcaggttacccccccccttttt 383

                                                                       
Query: 180 ttttttttaa-tcgatggtttatttgcctgcctcatttggcaggacacatcttatgagca 238
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttttttttaattc-atggtttatttgcctgcctcatttggcaggacacatcttatgagca 442

                                                                       
Query: 239 gaagtgtccattgttgtacactgcttggctgcagatgtgtccacaggaggatattaggac 298
           || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 443 gacgtgtccattgttgtacactgcttggctgcaaatgtgtccacaggaggatattaggac 502

                                                                       
Query: 299 ctgggagccataagatcaaaagcctgagcagaagttcagtccctctccatttgaggttct 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctgggagccataagatcaaaagcctgagcagaagttcagtccctctccatttgaggttct 562

                                                                       
Query: 359 tgttctctttggtgtggcaggggtttcgatgatgagcactgtgctagtggctgtgtagtc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgttctctttggtgtggcaggggtttcgatgatgagcactgtgctagtggctgtgtagtc 622

                                                                       
Query: 419 atcctgcaaggtgaagtgctggcctttctctaagaacatgggctaccacaagcttagact 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atcctgcaaggtgaagtgctggcctttctctaagaacatgggctaccacaagcttagact 682

                                                                       
Query: 479 aagcttcaggtcctccaggcatggcaggttccttaactagaggcaagataacgtgatagg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aagcttcaggtcctccaggcatggcaggttccttaactagaggcaagataacgtgatagg 742

                                                                       
Query: 539 ctatgtcccaagtcaggaagaatataacaggtataaattgagacaccctcctccttgctt 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ctatgtcccaagtcaggaagaatataacaggtataaattgagacaccctcctccttgctt 802

                             
Query: 599 aggatgtaaaactggaca 616
           ||||||||||||||||||
Sbjct: 803 aggatgtaaaactggaca 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1020
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1010
Effective search space:   612060
Effective search space used:   612060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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