BAC Information

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BAC

Clone NameMSMg01-054D14
Chromosome13 (Build37)
Map Location 73,906,926 - 73,907,400
singlet/doubletsinglet
Overlap geneSlc12a7
Upstream geneLOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36, Aytl2, Slc6a3, Clptm1l, Tert, Slc6a18, Slc6a19
Downstream geneNkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490, Arts1, Cast, LOC622204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054D14.T7 (MSMg01no054_d14.b1)MSMg01-054D14.TJ (MSMg01no054_d14.g1)
ACCAG282220AG282221
length776697
length of high quality
(start - end)
342 (125 - 466)473 (123 - 595)
definitionCHROMAT_FILE: MSMg01no054_d14.b1 PHD_FILE: MSMg01no054_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:22 2005CHROMAT_FILE: MSMg01no054_d14.g1 PHD_FILE: MSMg01no054_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACACAAACCACCCCCCCCCNNTTAACCCCGCCTGNNGGGCCGGGTATCAC
TACGGTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGAGTTCCGCCTGGCTTTGTAAATTTAACTGGGTGGGA
TCTTGTCCTGAGATTACCATCCAACCTCACCTAGCCCAGGTTAACGGAAC
TCAGGAATCTGCATTTATAAGCATAAACAAACAAACAAAAACTTAGCTGG
GTGGTGCCATCACCCCTCCCTAAATCTTTGTCACCTTCCTTTAGTATCTT
TCTGACAGGCTAGCTCATAGTGCAGCTGCCTTTCCTACTTTATATCTGTG
AAGCCCCTTATACAATTCATATTGTTTCCTTGTATTTTTGCAGAGTTGAG
AAATTATGCAGTTTCAAACTCTTTTTTTTTTTTTTTTGAGACAGGGTTTC
TCTGTGTAGCCCTGGCTGTCCCGCAACTCACTTTGTAGACCAGGCTGGCC
TTGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGTTGGGATTAAAG
GCATGCGCCACCACTGCCCGGGTTCAAGCTCATTCTTAAAAATCCTTTTT
CACAACCTTAAGGTCTGGTTCCTAAAGTCCCATTATTTGCCATTTTTGTT
TGAAACCTTAAGCCACACCTCTTGCTTTCCATTCCTCTTGGCTTTCCTCT
GAGTATTTATTCACGGAATTCACTTAAACTTCTAATAACGGCCAGGACAT
CTCCTTTGTAATATATAATGTTCACA
ACGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTAGGAAAGATGGCCTTGAGCCTG
GCAGGTGGAGTGCATGTGCCCGCATGCCACAGTGGCTGAGGCAACTCTAT
CAGAGCAGGGCTACCATGGATTCTAGTATGAAGAGGTTTCCCTTAGGAAG
CAGCTAGCAACGAGTAGCATTGTGTGAGCTGCTGGGCTGTGTGTTCTTAG
CATGCATTATACATATATATATAAAATCTTGTTTGTTTGTGTGGGTGTGG
TACTGTGAAGTTGCCTGTTGTTCCTAGTACACCACAGGTGTTATAGGCAT
AGCCTATGAGCTGCTTTGGGTGTTAGACTCTGGCTGAGGAGAAGCAGACG
TAGGCAGCACTGATTGGATTTTTGCTGCACCCCAGAAAACATCTCAGACC
TAAGCATTCACCTTCAAAACCATTTGGGAGCTGTCTCACTCTGCTGCCTG
CCTGGCAATGAATTGGGGAGAGAAAGGTCAAGGAGTAAAGATGTATGGCC
GCCACCTTAGCAGACAAGGTCTGACCTGGGAGTGTCATGGCAGGCCCATG
CTCCAGTGTTGAGGGGCAGAGACATTGGGCCAGGCCTTCTGCCTTCTGGC
GCTTGAGACAATGGCTCCCTCTTGCTAGCTGAACAGTTAGGGTACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_d14.g1 MSMg01no054_d14.g1 CHROMAT_FILE:
MSMg01no054_d14.g1 PHD_FILE: MSMg01no054_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:22 2005
         (473 letters)



>mm_chr13_73906726_73907600
          Length = 875

 Score =  876 bits (453), Expect = 0.0
 Identities = 469/475 (98%), Gaps = 2/475 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgccacagtggctgaggcaactctatcagagcagggctaccatggattctagtatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgccacagtggctgaggcaactctatcagagcagggctaccatggattctagtatgaa 260

                                                                       
Query: 61  gaggtttcccttaggaagcagctagcaacgagtagcattgtgtgagctgctgggctgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtttcccttaggaagcagctagcaacgagtagcattgtgtgagctgctgggctgtgt 320

                                                                       
Query: 121 gttcttagcatgcattatacatatatatataaaatcttgtttgtttgtgtgggtgtggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcttagcatgcattatacatatatatataaaatcttgtttgtttgtgtgggtgtggta 380

                                                                       
Query: 181 ctgtgaagttgcctgttgttcctagtacaccacaggtgttataggcatagcctatgagct 240
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 ctgtgaagttgcctgctgttcctagtacaccacaggtgttataggcatagcctaagagct 440

                                                                       
Query: 241 gctttgggtgttagactctggctgaggagaagcagacgtaggcagcactgattggatttt 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctttgggtgttggactctggctgaggagaagcagacgtaggcagcactgattggatttt 500

                                                                       
Query: 301 tgctg--caccccagaaaacatctcagacctaagcattcaccttcaaaaccatttgggag 358
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctgtgcaccccagaaaacatctcagacctaagcattcaccttcaaaaccatttgggag 560

                                                                       
Query: 359 ctgtctcactctgctgcctgcctggcaatgaattggggagagaaaggtcaaggagtaaag 418
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtctcactctgctgcctgcccggcaatgaattggggagagaaaggtcaaggagtaaag 620

                                                                  
Query: 419 atgtatggccgccaccttagcagacaaggtctgacctgggagtgtcatggcaggc 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtatggccgccaccttagcagacaaggtctgacctgggagtgtcatggcaggc 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 875
Length adjustment: 10
Effective length of query: 463
Effective length of database: 865
Effective search space:   400495
Effective search space used:   400495
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)