BAC Information

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BAC

Clone NameMSMg01-054L05
Chromosome13 (Build37)
Map Location 20,541,397 - 20,541,704
singlet/doubletsinglet
Overlap geneElmo1
Upstream geneEpdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneLOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054L05.T7 (MSMg01no054_l05.b1)MSMg01-054L05.TJ (MSMg01no054_l05.g1)
ACCAG282564AG282565
length772706
length of high quality
(start - end)
312 (99 - 410)296 (74 - 369)
definitionCHROMAT_FILE: MSMg01no054_l05.b1 PHD_FILE: MSMg01no054_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:57 2005CHROMAT_FILE: MSMg01no054_l05.g1 PHD_FILE: MSMg01no054_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTTATTTTATTTTTTTATTTTTTATACCCCNCCCNNNCCATATATCCC
CTCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATC
CGCGGAATTCTTCTGCATCTGCATTCAACTCCTGAACAAAACATGGAAGG
AAATGAGGGCAACATCTGAAGACTTCAACAAGGTAACGGGTGTGGTCGCC
CGCCATCTGACAGTCTGGGGCTCGCGCCTCAGATGTGGTATACTATGTTC
CCTCAGCTGTGCATAGAAGCAGTGTTCGAGGGAAGAGAAGGAAAGGAGTG
TGATTTTAAATTGCACCCAAAATGGAAGCAACCACTAGGTATCTGCTTGG
GCTCGCTTTGGCCCCTTTGTCTCATCCAAGGCCACCAACAGAGAACCTTT
CTGGAGAAACTGTCCTGGTGAGTTTTTCCTTTGTGGTTTTGGTATGGAAT
GCTTTGTCACTGGTTTGACACCATTAAGTAAGGCGTTCATCCCTCTATCT
GTGGAGAACACAAATGGATAGCCAGTCTATGCAGAAGACAATTGTCTGGC
CCTTTGTTATGTTTGTGTAGCAAGGACACCTTAAGTTCATATGACTGCTT
CTATGTCCTAATAACACTCATTTCTATGATGGAGGATCTCTCTCTCTTTC
TCTCTCTCTTCTCATCTCTATCTCTATTCTCTATCATCTCTAACCTCTAT
CTTCCAATCTCAAACCTCTATCTCCATCCTCTTATCTTTATTTTCTATTC
TCTTATCGCTTATTATATTCTT
TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGTTCCAAGCAATGTTACACTTTCCT
TTGGTCTCTGCATGTGCTACCCCCACAGACACATAGGTGTATATATAAAA
TAATTTTTGAAATTTCTCAGGCTATGAATATAGCTCAAGTGGTAGAGAGC
TTGCTCAGCCCTGGTTTGCTCTCCAGCACCACATGAACTGGATGTGGCAG
CACTGGTCTGTCTATAGTCCCAGCACCCTTGAAGTGGAGGCAGGAGGATT
AAAATTTTAAAATCTCTTTAGCTACTAGCAAGTTTGAAGCCAGCTTGGCC
TACATGAGGCTCTGTCTCAAAACTAAACAAAACAATACCAAACAAAACAA
AACAGAACAAAACACCCGTATAAATAAAAGATGTACAAAATATTGTATAT
TTATGTAATAAAATACTATTGAGCAATACAAGAAGGGAAGCATTGATAAA
TCTTTCATGTTAATGAACCTTGAAACTATTAGGCAAGATAAATCTTCCAA
CCATAAAAAGTCATAACTCTTAACGTTCCATTCCTATAAAGTATCCAGAA
TGGGCAAATTGAGACAGAAAACCGATTACTTGGTTGCTGCAGATAGTTGG
GCCAAAAAACTGGGAGTGACTGAAAGTGGCGATAAGGTTTCTTTTTTGGA
TTGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_l05.b1 MSMg01no054_l05.b1 CHROMAT_FILE:
MSMg01no054_l05.b1 PHD_FILE: MSMg01no054_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:57 2005
         (312 letters)



>mm_chr13_20541192_20541904
          Length = 713

 Score =  534 bits (276), Expect = e-156
 Identities = 300/308 (97%), Gaps = 1/308 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcttctgcatctgcattcaactcctgaacaaaacatggaaggaaatgagggcaac 65
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcttctgcatttgcattcaactcctgaacaaaacatggaaggaaatgagggcaac 265

                                                                       
Query: 66  atctgaagacttcaacaaggtaacgggtgtggtcgcccgccatctgaca-gtctggggct 124
           |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 266 atctgaagacttcaacaaggtaacgggtgtggtcacccgccatctgacaggtctggggct 325

                                                                       
Query: 125 cgcgcctcagatgtggtatactatgttccctcagctgtgcatagaagcagtgttcgaggg 184
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cacgcctcagatgtggtatactatgttccctcagctgtgcatagaagcagtgttcgaggg 385

                                                                       
Query: 185 aagagaaggaaaggagtgtgattttaaattgcacccaaaatggaagcaaccactaggtat 244
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 386 aagagaaggaaaggagtgtgattttaaatcgcacccaaaatggaagcaaccactaggtat 445

                                                                       
Query: 245 ctgcttgggctcgctttggcccctttgtctcatccaaggccaccaacagagaacctttct 304
           ||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 446 ctgcttggggtcgctttggcccctttgtctcagccaaggccaccaactgagaacctttct 505

                   
Query: 305 ggagaaac 312
           ||||||||
Sbjct: 506 ggagaaac 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 713
Length adjustment: 9
Effective length of query: 303
Effective length of database: 704
Effective search space:   213312
Effective search space used:   213312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)