BAC Information

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BAC

Clone NameMSMg01-055E12
Chromosome13 (Build37)
Map Location 50,882,321 - 50,882,631
singlet/doubletsinglet
Overlap geneLOC100040190
Upstream geneLOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161
Downstream geneEG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2, Sema4d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055E12.T7 (MSMg01no055_e12.b1)MSMg01-055E12.TJ (MSMg01no055_e12.g1)
ACCAG282992AG282993
length715723
length of high quality
(start - end)
315 (43 - 357)311 (76 - 386)
definitionCHROMAT_FILE: MSMg01no055_e12.b1 PHD_FILE: MSMg01no055_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:39 2005CHROMAT_FILE: MSMg01no055_e12.g1 PHD_FILE: MSMg01no055_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:39 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTCCTTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGACCCTCTTTATATATGTTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTTGGTGGTCTTTT
TGTCTTATTGACAGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCCATCTTACAGTACAAGCCATTGCTGTTCTG
TTCAGCAAATTTTCCTTTGTGCCCATATCTTCAAGGCTTTTCCCCACTTT
CTCTTTTATAAGTTCCAGCGCCTCTGGTTTTATGTGAAGTTCCTTGATCC
ACTTACATTTGACCTTAGTACAAGGAGGTAAGTATGGATCGATTCACATT
CTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCT
GTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGCTCAAAATCAAGTGTA
CATAGGTGTGTGGGCTCATTTCTGGACCTTCAATTGTATTCCATTTGTTC
TACTTTGTTGTCTCTTGACCAGTATCATGCAGCTCTTTACCACAATTGCT
TCCGTTAGATAAACCTTTAAGTCTTGGCACGTTGTTTTTCACCCATAGGT
TTCTTTTTTTCCTAG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGGACAGAAGTCATGGATTTAATA
CTGAAACCCCATTCTGGAGCTGAGAAGGGTTACTTGGTGAAATGCAGAGA
AGAATGGGCCAAGACCAAAGACCCAGCCTCTGCTCTCAAAAAGCTGCCCA
TCAAAAGGTGTGTGGAAGGGCAGCTGCTTCGAGGACTTTCCAAATATGGA
ATGAAGAATATAGTCTCTGCATTTGGCATAATTCCAAGAAACAATCGCTC
AATGTATAGCCACAGTTATCAGAGCTACGTATGGAACACCATGGTGAGCA
GAAGAACTGAGGAGTCCGGGCTGAGGCTTGTGCCCGGATACCTTGTTCTC
AATTAGTCACGCCCACCTACATTGAGGAAGATGACATCAACAACTACTCC
ATCCGGGATGTGGTGATGCCTTTGCCTGGGTTTGATGCTACCTACCCCAA
ATATAAAGTCTGTAAGGCCTATAGGGAAATCGCCTGCTGAAGACAATTTT
GATATTGACAACCGGAGACATACTATTCGAGATTACTCCTTATCAGGTGC
CTACGGAAGGATCCTTATTAGGCCTCAGAGCGTCAGCTGGGAAGTTGTTG
CATATGATGATCCTAACATTCCACTTTTTAACATGGATGTGGACTACCTC
TAGCGCAATCCACATTAGTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_e12.g1 MSMg01no055_e12.g1 CHROMAT_FILE:
MSMg01no055_e12.g1 PHD_FILE: MSMg01no055_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:39 2005
         (311 letters)



>mm_chr13_50882121_50882831
          Length = 711

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggacagaagtcatggatttaatactgaaaccccattctggagctgagaagggttactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggacagaagtcatggatttaatactgaaaccccattctggagctgagaagggttactt 260

                                                                       
Query: 61  ggtgaaatgcagagaagaatgggccaagaccaaagacccagcctctgctctcaaaaagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgaaatgcagagaagaatgggccaagaccaaagacccagcctctgctctcaaaaagct 320

                                                                       
Query: 121 gcccatcaaaaggtgtgtggaagggcagctgcttcgaggactttccaaatatggaatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccatcaaaaggtgtgtggaagggcagctgcttcgaggactttccaaatatggaatgaa 380

                                                                       
Query: 181 gaatatagtctctgcatttggcataattccaagaaacaatcgctcaatgtatagccacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatatagtctctgcatttggcataattccaagaaacaatcgctcaatgtatagccacag 440

                                                                       
Query: 241 ttatcagagctacgtatggaacaccatggtgagcagaagaactgaggagtccgggctgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatcagagctacgtatggaacaccatggtgagcagaagaactgaggagtccgggctgag 500

                      
Query: 301 gcttgtgcccg 311
           |||||||||||
Sbjct: 501 gcttgtgcccg 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)