BAC Information

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BAC

Clone NameMSMg01-056F19
Chromosome13 (Build37)
Map Location 24,192,239 - 24,192,524
singlet/doubletsinglet
Overlap geneLrrc16
Upstream geneV1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
Downstream geneLOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056F19.T7 (MSMg01no056_f19.b1)MSMg01-056F19.TJ (MSMg01no056_f19.g1)
ACCAG283790AG283791
length717744
length of high quality
(start - end)
286 (73 - 358)214 (69 - 282)
definitionCHROMAT_FILE: MSMg01no056_f19.b1 PHD_FILE: MSMg01no056_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:00 2005CHROMAT_FILE: MSMg01no056_f19.g1 PHD_FILE: MSMg01no056_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTAGATGTCCCGGAACAAGAAACATCTCTACAGCATTTATATTAATT
TCTACTCTAGATGTATGTGATACCATTTTCTACATATTCAAATTGATACA
GGAATTTAAAGACTCTTCATTTCATATTTCCTATGCCATAGGTTTGTGAT
GCCTTGCGGTTAAACATAGAAACTCTGCTGCGCACTCTTGTATGTTGAGC
ACAGATCTTTGGAGTCACAGGAATACTTCAGGAAATTCTATTATTCATAC
TTTTTAAGGTAATAGCAAATTGCTGTCAGGTGCCTTAGGTGAGAGTCACT
CAGAGGGATATTTCTCAGGCACACACCCCTACAGCCTGACGCTTCTCAGT
CTCCAGGGTCATGTCCACAGGGATGGGTTGATTCCCAGGAATCCTGGAGA
CACTATAATTCAGCATGCTCAAATCCTTTATGCATAGACCATGCAGGAGC
TGCATGCGAGGTACACATGTTCTCCCTTGACATTAGTTCACGTCCAGGGT
ACTGCAACGTTCAACCGTACACAATGCCATGTGAAGTGTCTCTAGGCTGT
ACTGTTCGGCGAGTGTCGATAAGAGGAGCAGCCCGCATCTGTTCAGTAAA
GATACCATTTTCTCCACATACTCTGAAAGCACAGTGTATGATCTCTCATA
CGCACATTCCTATTCTG
TAATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCAGAAATTCAAGGCCTGAGGCTGGAGAGATGACTCAGCTA
GTTAAGAGCACTGGATATTCTTCTAGAGGTCCTGAGTTCAATTTCCAGCA
ACCACATGGTGGCTCACAACCATCTGTAATGGTATCTGATGCCCTCTCCC
TGCATGCACACAGAACACTGTGTATGTATATATGTATGTATGTATGTATA
TATATATATATATATATATATATATATGAGTATATACATATACATATATA
CACACATAATGTGTATCTTTTTTTCTTCACATACATACATACATACTCTC
ATAAATTTTTTTTTTTCCCCCCCCACCCCCCCATTTATCGAGCTATAATA
TTCTATTATATTACCCCTCCCCCCATAAAAAAAAATAATAAGGGCGGGGG
AGAGACCATTGGCCCACCTCCAATATCCATACTTAACACCTATCTTTTAT
CTCCCATTACTCCACAGTTCCCCCTCTACCTTTTATTATTCCCTCATCAA
CTCTACATATACTCACATACTTTACTACTACCTCTATCTCTTTTCTATCA
ACACTTTACTTTTTACCTTCCATCTATCTTCCCTATTCTCCCTTCCCTCT
CTCTTTATTCCCCTCTATTATTTCCTTATTTTCCATTATCCTCTATTCTC
TTTTCCCCACCTTTTCTACCCTTTCCCCCCCTCCTACCCCCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_f19.b1 MSMg01no056_f19.b1 CHROMAT_FILE:
MSMg01no056_f19.b1 PHD_FILE: MSMg01no056_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:00 2005
         (286 letters)



>mm_chr13_24192039_24192724
          Length = 686

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacatctctacagcatttatattaatttctactctagatgtatgtgataccattttcta 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 aaacatctctacagcatttatattaatttctactctagatttatgtgataccattttcta 260

                                                                       
Query: 61  catattcaaattgatacaggaatttaaagactcttcatttcatatttcctatgccatagg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 catattcaaattgatacaggaatttaaagactcttcatttcatatttcctatgccacagg 320

                                                                       
Query: 121 tttgtgatgccttgcggttaaacatagaaactctgctgcgcactcttgtatgttgagcac 180
           ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 tttgtgatgccttgcagttaaacatagaaactctgctgcacactcttgtatgttgagcac 380

                                                                       
Query: 181 agatctttggagtcacaggaatacttcaggaaattctattattcatactttttaaggtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatctttggagtcacaggaatacttcaggaaattctattattcatactttttaaggtaa 440

                                                         
Query: 241 tagcaaattgctgtcaggtgccttaggtgagagtcactcagaggga 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagcaaattgctgtcaggtgccttaggtgagagtcactcagaggga 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)