BAC Information

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BAC

Clone NameMSMg01-056G05
Chromosome13 (Build37)
Map Location 18,349,252 - 18,349,688
singlet/doubletsinglet
Overlap genePou6f2
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik
Downstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056G05.T7 (MSMg01no056_g05.b1)MSMg01-056G05.TJ (MSMg01no056_g05.g1)
ACCAG283810AG283811
length710708
length of high quality
(start - end)
192 (125 - 316)437 (73 - 509)
definitionCHROMAT_FILE: MSMg01no056_g05.b1 PHD_FILE: MSMg01no056_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:02 2005CHROMAT_FILE: MSMg01no056_g05.g1 PHD_FILE: MSMg01no056_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCAAAAAGAGGCGCGG
AATTCCATTCTTTCCTGAATCTTATGGAGCACAGTACATAATTAAGGTCA
GTGAATACCATAAGCTGTGCCCAAGATATTTCCAAGATCTGCACACATAG
AGATTAGAATATGTATTAGTTGGCTTTGGTGGTTGAACATTATAAACAAA
TTAAATAATATGAAATATTACTTTAAATATAAACATTATTAAGGTATATA
ATAATCGACAGATATAGCATTGATATAGCAAACTTGCAGGGTTTCAGTGA
ATTTACATGGATGTTATCTATATGGCACTCACAGCAGCCAACTTGTGAAG
GAAGTTCTGTCATCATCCCTGACTTTCATAAGAGAAAGCTGATGAATAAG
TAATTGGAAAACAATTCCAAATCCGCATTCCTAGTAATGGGGAAGATTTA
CATTTAAACCTGGTTGTGTTTAAGCTGTAAGAAACCTTGCCTTTAATTTT
TATACCAAACTGCTTCCTATATCTGTCCAGCCCGGTTTTCGCCACTGCGC
CAAATAAGCCGACAGTCTAGGCCCATCTTGTTTTATTGCTCTTAAAGCTT
TCAGCCCACTACCCGTCTTGCTCCTCTTGTTTGTGTCACCCCATTTATGG
CCCCTCTAACCTACAACCGGCCTCCTTCATATTCCCCAACACTTAATGGT
GCCCCCTCAN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTGCAGCTGTGGCTATCATGCTTGGGG
GAAGGGCTTGTGATGCCCTATACCTCACTGAGGGTTTCTGGTTCAAAAGA
GAAGAAGACAACAAAGTCAGAGGGGATTGCTGGAAAGCAGGATTTCTATG
AAAAAGGGATGATGAGAAAACATGAGAGAAAATGTTCCAAACTCAGTACT
GCATATATAAAATGTCAAACAATAAAAGGGACAAGTTAGGTCACTTGCCA
GGAAATCTACAGCAAAGCTAACATAAATGTGGTTTAAACCTTGATTCTGC
TAGTGTGTATTACGGTCACATTCTACTTGGGAAAACAGATATGAATACCA
ATTATAATACCAAGCGATGTGTTCATACTGTCTCTTCTGAGATCATGGTT
TTCGTTCTTTCTCCACTCCCCCAAAAGTCTGCACTTCTGTCCTTTAAAGT
CTCACTCCAATCTCACATTTCAGTTGAACTACTGCAGATGGCTTCATGTG
CACATACTGAAATGTTCTCTCATTAAGCTCAATTAGGCCTCCAGATTTTT
TGTTTGCTTGTTTGGCCCGTTTTGGTTTTTTTTAACCAGTCTTCTCCTGC
CCTCCTATATTTTGAAGATTCTCGGCACTGTGGCCTGGGACCCCGCCTTT
CCCTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_g05.g1 MSMg01no056_g05.g1 CHROMAT_FILE:
MSMg01no056_g05.g1 PHD_FILE: MSMg01no056_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:02 2005
         (437 letters)



>mm_chr13_18349052_18349888
          Length = 837

 Score =  837 bits (433), Expect = 0.0
 Identities = 436/437 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgcagctgtggctatcatgcttgggggaagggcttgtgatgccctatacctcactgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgcagctgtggctatcatgcttgggggaagggcttgtgatgccctatacctcactgag 260

                                                                       
Query: 61  ggtttctggttcaaaagagaagaagacaacaaagtcagaggggattgctggaaagcagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtttctggttcaaaagagaagaagacaacaaagtcagaggggattgctggaaagcagga 320

                                                                       
Query: 121 tttctatgaaaaagggatgatgagaaaacatgagagaaaatgttccaaactcagtactgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctatgaaaaagggatgatgagaaaacatgagagaaaatgttccaaactcagtactgc 380

                                                                       
Query: 181 atatataaaatgtcaaacaataaaagggacaagttaggtcacttgccaggaaatctacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatataaaatgtcaaacaataaaagggacaagttaggtcacttgccaggaaatctacag 440

                                                                       
Query: 241 caaagctaacataaatgtggtttaaaccttgattctgctagtgtgtattacggtcacatt 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaagcaaacataaatgtggtttaaaccttgattctgctagtgtgtattacggtcacatt 500

                                                                       
Query: 301 ctacttgggaaaacagatatgaataccaattataataccaagcgatgtgttcatactgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctacttgggaaaacagatatgaataccaattataataccaagcgatgtgttcatactgtc 560

                                                                       
Query: 361 tcttctgagatcatggttttcgttctttctccactcccccaaaagtctgcacttctgtcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttctgagatcatggttttcgttctttctccactcccccaaaagtctgcacttctgtcc 620

                            
Query: 421 tttaaagtctcactcca 437
           |||||||||||||||||
Sbjct: 621 tttaaagtctcactcca 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)