BAC Information

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BAC

Clone NameMSMg01-056J24
Chromosome13 (Build37)
Map Location 46,028,079 - 46,028,193
singlet/doubletsinglet
Overlap geneAtxn1
Upstream geneDtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr
Downstream gene5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056J24.T7 (MSMg01no056_j24.b1)MSMg01-056J24.TJ (MSMg01no056_j24.g1)
ACCAG283989AG283990
length713728
length of high quality
(start - end)
39 (87 - 125)114 (74 - 187)
definitionCHROMAT_FILE: MSMg01no056_j24.b1 PHD_FILE: MSMg01no056_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:20 2005CHROMAT_FILE: MSMg01no056_j24.g1 PHD_FILE: MSMg01no056_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGGCATTATTCTCACGATGATGTGATTGGATGAAAAGAAGATCCTCT
ACGCAGCAGCAAATGACTATATCTCCATATATATATATATATATATGTAT
ATATATATATATATATATATATAGAGAGAGCCGCCCCCCCCCCCCCTCTC
CCTCCCCCCCTCCCCGCCTCACCCCCCCCCCCCTCCCCTTCCCTCCCCCT
TTTCCCTCCCCACCCCCGCCTGGCGTTCGGCGCCTCCCCCGCCGGCCGCC
CCCTTCGCCGTGTTTCTGTATTTTTTTTTTCTCCTCTGTCTCTTGGTCCC
CCCGCCCCCCTTCCTCCCCACTCCCCGCCCCCCCTCGGGGAGGGCCGCTT
CGGCCCCCCCCCCCCCCCCCCCTCGCTTTCTCGCCTCGCCCCGCCCGTCC
CCTTTCCTCCCCCCCTTTTTCTCACTTTATCATCTCCTCCCACTTTTTCC
CCCACCCCCCTCCTCCTCCCCTCCCCCTCCCTCGCCGCCTCCCCCCCCCC
TCCCCGACTACCCTTTCTCCCCCCCTCCCCCCCACCATCTCCCCCCCGCT
CCCCCTCCTCCCCTTCCCCTACCTTTTCCCTCACTTCTCTCCCTCCCTTC
CATCTCCCCCCCCCCTCCCCCCTTCCCTCTCTCCTACTCTCTCCCCCCTT
CTCTCCCTCTTTT
ACGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAGCTGTGTGTTCCCGAGTATTCCAG
GCACTGCTTCCTGACAGCTCTCACTGTAGGGATTGGCACCAGCAAAGAAA
AAAAATGTACAGTTTAGATACTTAAGAGCAAATAATTGGCTGGGGATGCT
TTAAATAGCTCAGGAAATGTGTCGCGGTGTTTACTTGACATTTGCTGTAT
TGAACACTAATACTGAAACATTTCTTTGACCACAGAGAATGCCTGGGTGG
GTGGCGTGGGGGCAGGCATGATCTTATTAGAGAGGGAAACAGCCGCCATG
ATTCACTCGCAGTCATATGGTAAATGAAGTTGGTCCGAATATGGAGATGC
CAGGGGAATAAATGACCGCTTGTTTGATTGAGTAGCCTTGGAGGTCGGTG
GCTGCAAGCATAACGCAAAGCCCAAACAACTCCCTCGGATTAGGATTCCA
TGGCTGGGAGTTGTCTTTCTCACAATTGTCAGAGCCTTTGTAACCTTGGT
TGCTCTGAATTTTTCCAGGTCCTCTAAGTGTGATGAATGACTCCCCTAAT
TCAGTGTTTATTTACTTAATAAAATATCTACTAGTTTAAATAATGCTTGT
ATACTGCATTGATCACACATGGTTGCTGTTGTGTATAATGTCTCCTGCGT
ACTTAGTATCTGTTTGAAATGTCTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_j24.g1 MSMg01no056_j24.g1 CHROMAT_FILE:
MSMg01no056_j24.g1 PHD_FILE: MSMg01no056_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:20 2005
         (114 letters)



>mm_chr13_46027879_46028393
          Length = 515

 Score =  199 bits (103), Expect = 4e-56
 Identities = 112/115 (97%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagctgtgtgttcccgagtattccaggcactgcttcctgacagctctcactgtagggat 60
           |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 315 caagctgtgtgttcccgagtattctaggcactgcttcctgacagctcttactgtagggat 256

                                                                  
Query: 61  tggcaccagcaaag-aaaaaaaatgtacagtttagatacttaagagcaaataatt 114
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tggcaccagcaaagaaaaaaaaatgtacagtttagatacttaagagcaaataatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 515
Length adjustment: 8
Effective length of query: 106
Effective length of database: 507
Effective search space:    53742
Effective search space used:    53742
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)