BAC Information

Click to search

BAC

Clone NameMSMg01-056L20
Chromosome13 (Build37)
Map Location 46,027,702 - 46,028,193
singlet/doubletsinglet
Overlap geneAtxn1
Upstream geneDtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr
Downstream gene5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056L20.T7 (MSMg01no056_l20.b1)MSMg01-056L20.TJ (MSMg01no056_l20.g1)
ACCAG284074AG284075
length745717
length of high quality
(start - end)
49 (90 - 138)491 (75 - 565)
definitionCHROMAT_FILE: MSMg01no056_l20.b1 PHD_FILE: MSMg01no056_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:29 2005CHROMAT_FILE: MSMg01no056_l20.g1 PHD_FILE: MSMg01no056_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCG
GAATTCAAGGAATTATTCCCAAGATGAGTTGCGTGCATGAAAAGAAGATC
CTCTACGCAGCAGCAAATGACTATACCCATATATATATATATATATATAT
CTATATATATATATATATATATATATAGAGAGAGAGAGAGCCAGCCCCCC
CCCAGACACCAACGGCACCCCCCACAGACTCTACCCGCCCCCACGCAACC
CGCACTACAAACACCCACCCCCGAAAACACTACCCGACCCTGCCCACCCA
CCCCCCCCCAGCCGCCCCCCCCCCTCTCCCCCCCCCCCGCCACCACAACC
ACCGCCCACCACTCCATATCCTCACCCCCCCCCCCCCCACACACCCCCCG
CCCACACCGCCCACCCCCCACCCCCCCTCCCCACCACCGACAACCCCGCC
CCCACAGACCCCCACCCCCCCCCACCCCCGCCCACCTCACCCCCCACTCA
CCACCGCAACCCACCCCCCCCTACCCCCCACCCCCCCCACGCACCCCCCC
CCCCTCCGCCCCGCCCACCCGCACCGGCGACCGCCCCTCTGGCCCCCCTC
CCCGCCGCCCGGCCCGCTCGCCTCAACTCTACCCCGCTCCGCCCACCCTC
AACCACTCGCTCCACGGCCCCCCCCCGACCCTCACCACCCTACCCGGCTG
CCCGCACACCCCCCCCGCGACCCCCCCCACACCACCCACCTTCCC
NCGATGAAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAGCTGTGTGTTCCCGAGTATTCCA
GGCACTGCTTCCTGACAGCTCTTACTGTAGGGATTGGCACCAGCAAAGAA
AAAAAATGTACAGTTTAGATACTTAAGAGCAAATAATTGCTGGGGATGCT
TTAAATAGCTCAGGAAATGTGTCGGGTGTTTACTTGACATTTGCTGTATT
GAACACTAATACTGAAACATTTCTTTGACCACAGAGAATGCCTGGGTGGG
TGGGGTGGGGGCAGGCATGAGCAGAAGAGAGAGGGAAACAGCCGCCATGA
TTCACTCGCAGCCAAATGGTAAATGAAGTTGGTCCGAATATTGAGATGCC
AGGGGAATAAATGACCGTTTGTTTGATTGTGTAGCCTTGGAGGGCGGTGG
CAGCAAGCATAACGCAAAGCCCAAACAACTCCCTCGGATTAGGTTTCCAT
GGCTGGGAGTTGTCTTCATCACAATTGTCAGAGCCTTTGAGCCCTTGGCT
GCTCTGAGTTTTCAAGGTCCTCAAAGCGGGATGAATGACTTCCTTATTTC
TGTGTTTATTTAATTATTTTTTTATCTATTTTGTTTAATAGGGCTTGATA
TCTGCTTTGTCTACCCCTGCTTGTGATGTGTACAAGGACTCTAGTGAACT
TGTTTTTTGTTGGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_l20.g1 MSMg01no056_l20.g1 CHROMAT_FILE:
MSMg01no056_l20.g1 PHD_FILE: MSMg01no056_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:29 2005
         (491 letters)



>mm_chr13_46027502_46028393
          Length = 892

 Score =  920 bits (476), Expect = 0.0
 Identities = 488/492 (99%), Gaps = 1/492 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagctgtgtgttcccgagtattccaggcactgcttcctgacagctcttactgtagggat 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 692 caagctgtgtgttcccgagtattctaggcactgcttcctgacagctcttactgtagggat 633

                                                                       
Query: 61  tggcaccagcaaag-aaaaaaaatgtacagtttagatacttaagagcaaataattgctgg 119
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tggcaccagcaaagaaaaaaaaatgtacagtttagatacttaagagcaaataattgctgg 573

                                                                       
Query: 120 ggatgctttaaatagctcaggaaatgtgtcgggtgtttacttgacatttgctgtattgaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ggatgctttaaatagctcaggaaatgtgtcgggtgtttacttgacatttgctgtattgaa 513

                                                                       
Query: 180 cactaatactgaaacatttctttgaccacagagaatgcctgggtgggtggggtgggggca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cactaatactgaaacatttctttgaccacagagaatgcctgggtgggtggggtgggggca 453

                                                                       
Query: 240 ggcatgagcagaagagagagggaaacagccgccatgattcactcgcagccaaatggtaaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ggcatgagcagaagagagagggaaacagccgccatgattcactcgcagccaaatggtaaa 393

                                                                       
Query: 300 tgaagttggtccgaatattgagatgccaggggaataaatgaccgtttgtttgattgtgta 359
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tgaagttggtccgaatatggagatgccaggggaataaatgaccgtttgtttgattgtgta 333

                                                                       
Query: 360 gccttggagggcggtggcagcaagcataacgcaaagcccaaacaactccctcggattagg 419
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 332 gccttggagggcggtggcagcaagcagaacgcaaagcccaaacaactccctcggattagg 273

                                                                       
Query: 420 tttccatggctgggagttgtcttcatcacaattgtcagagcctttgagcccttggctgct 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tttccatggctgggagttgtcttcatcacaattgtcagagcctttgagcccttggctgct 213

                       
Query: 480 ctgagttttcaa 491
           ||||||||||||
Sbjct: 212 ctgagttttcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 892
Length adjustment: 10
Effective length of query: 481
Effective length of database: 882
Effective search space:   424242
Effective search space used:   424242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)