Query= MSMg01no056_m23.b1 MSMg01no056_m23.b1 CHROMAT_FILE:
MSMg01no056_m23.b1 PHD_FILE: MSMg01no056_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:34 2005
(578 letters)
>mm_chr13_50418647_50419624
Length = 978
Score = 735 bits (380), Expect = 0.0
Identities = 515/560 (91%), Gaps = 3/560 (0%)
Strand = Plus / Plus
Query: 21 ggtcccatcactagagttggtgctatgtcttctgagggcagaggcttcttgcccatggac 80
|||||||||||||||||| |||||||||| | |||||||||||||| |||||||||||||
Sbjct: 221 ggtcccatcactagagttagtgctatgtcctgtgagggcagaggctgcttgcccatggac 280
Query: 81 cccatgactgcacacataggcttgagaagatggaaagcaagagagccctggtcagagtga 140
||| |||| |||||||||||||| |||||||||||||| ||||||||| ||||||||||
Sbjct: 281 accacgactacacacataggcttgtgaagatggaaagcaggagagcccttgtcagagtga 340
Query: 141 cacatctttcaaatgccattcatagtcaccacacagtgcagtgatacaggttcagtgtgg 200
|||| |||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct: 341 tgcatccctcaaatgccattcatagtgaccacacattgcagggatacaggttcagtgtgg 400
Query: 201 catctccaaggggtcttgggaggaggg-ggcaaacaatgactactgttttagttagggac 259
|||||||||||||||||||| | |||| |||||||||||||| || |||||||||| |||
Sbjct: 401 catctccaaggggtcttggg-gcagggaggcaaacaatgactgctattttagttagagac 459
Query: 260 atcatggcaaagcttataaaagaaaacatttaattggatccagcttccagttgagaggtt 319
| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
Sbjct: 460 accatggcaaagcttataaaagaaaacatttaattggagccagcttatagttgagagggt 519
Query: 320 tagtccattatcctggcaagaagtatagcagcatgcaggcagacatggtgctgtaatggt 379
| ||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 520 tcgtccattatcctggcaagaagcatagcagcattcaggcagacatggtgctggaatggt 579
Query: 380 acctgagagttctacatctgggtctgcaggcagcaggaaggaagactgagtcactaggcc 439
|||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 580 acctaagagttctacatctgggtccgcaggcagcaggaagtaagactgagtcactaggcc 639
Query: 440 tagcttgagcctatgagacatcaaagcccacctccacagtgacacatttcctctaccaag 499
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 640 tggcttgagcctatgagacatcaaagcctacctccacagtgacacatttcctctaccaag 699
Query: 500 gccacacctcctccaa-caaggtcacccctcctctccctatgggcctattggagccattt 558
||||||||| |||||| ||||| || ||||||||||| |||| |||||| ||||||||||
Sbjct: 700 gccacacctactccaaacaaggacatccctcctctccttatgagcctatgggagccattt 759
Query: 559 ttattcaaaccataactgag 578
|||||||||||| |||||||
Sbjct: 760 ttattcaaaccaaaactgag 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_m23.g1 MSMg01no056_m23.g1 CHROMAT_FILE:
MSMg01no056_m23.g1 PHD_FILE: MSMg01no056_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:34 2005
(593 letters)
>mm_chr13_50802892_50803882
Length = 991
Score = 1027 bits (531), Expect = 0.0
Identities = 577/593 (97%), Gaps = 2/593 (0%)
Strand = Plus / Plus
Query: 1 cataaaataaaagagaagggacacttcccagtgtgttacacaaagccactgttgccctgt 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 cataaaataaaagagaagggacacttcccagtgtattacacaaagccactgttgccctgt 260
Query: 61 caacaaaaacagacaaacagaaaagagctgcttcagagggtagagttgcttaccaccaga 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacaaaaccagacaaacagaaaagagctgcttcagagggtagagttgcttaccaccaga 320
Query: 121 gcagatgaccaaaattttgtgtcaagcccacatggtggaaggatagaactgaccccacaa 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagatgaccaaaatttcgtgtcaagcccacatggtggaaggatagaactgaccccacaa 380
Query: 181 tttgtcctctgactttcacatgtgtgcagacacacaagtacagaacccaaactcttgtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgtcctctgactttcacatgtgtgcagacacacaagtacagaacccaaactcttgtag 440
Query: 241 ccccgagactacaaagccagtcagtgggaagagaggctcagtgcctatgacccaaccaaa 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 ccccgagactacaaagccagtcagtgggaaaagaggctcagtgcctatgacccaaccaaa 500
Query: 301 gagattcagacaagatgagaaggcagggtgaaggacccacctcactaggaagcctgatgt 360
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 501 gagattcagacaagatgagaaggcagggtaaaggacccacctcactaggaagcctggtgt 560
Query: 361 ggatgctcatcttctgtcctcagtggaagctccttttagcttcctttccctctgggaggt 420
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 561 ggatgctcatcttctgtcctcactggaagctccttttagcttcctttcactctgggaggt 620
Query: 421 cctttcatctccccctgggttacacaatgtaatggacactgtcacatgatcttcaggaca 480
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 cctttcatctccccctgagttacacaatgtaatggacattgtcacatgatcttcaggaca 680
Query: 481 accaaactctgttcctccattgagaaacacccccagctgcccagaatccatctcataaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accaaactctgttcctccattgagaaacacccccagctgcccagaatccatctcataaca 740
Query: 541 gaggttgcttccctccattttcatacactatgttctggggcttccctccttgg 593
||||||||| ||||| | | || |||||||||||||||||||||||||||||
Sbjct: 741 gaggttgctcccctc--tgtacacacactatgttctggggcttccctccttgg 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 991
Length adjustment: 10
Effective length of query: 583
Effective length of database: 981
Effective search space: 571923
Effective search space used: 571923
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
