BAC Information

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BAC

Clone NameMSMg01-057H16
Chromosome13 (Build37)
Map Location 55,223,094 - 55,223,299
singlet/doubletsinglet
Overlap geneZfp346
Upstream geneHrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707
Downstream geneFgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057H16.T7 (MSMg01no057_h16.b1)MSMg01-057H16.TJ (MSMg01no057_h16.g1)
ACCAG284625AG284626
length768716
length of high quality
(start - end)
209 (130 - 338)86 (78 - 163)
definitionCHROMAT_FILE: MSMg01no057_h16.b1 PHD_FILE: MSMg01no057_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:26 2005CHROMAT_FILE: MSMg01no057_h16.g1 PHD_FILE: MSMg01no057_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTNTTTTTNTTTNNTTNTTTTTTTTTTTTTCTCCTTTTCCNCCGAG
AACGCNNTATCTATAATTGCGGCGCTAAACGACTCACTATTTCGAGAGGG
CCGCGGAATTCCTGGAATTCCAGCAGGGAGGGTAAGAAGGATAAAAATAT
TTCATCTCCATCCTCAAATACCTATTATACAGCTGAAGTAGGCATTGGCG
CTCTGAGCCTGTACAAACAAAAGCAGGCAAGCAGATTAGGAATGCCTTCT
ATTATTTATTTAGTTGTAGTTTTTCTGAGGGTCTCACTATGTAGCTCCCT
GGCTGGTCTAAAATTCAAGATATAAACCAGGCTGGGATTAAAGCGTGTGT
CACCACACCTGGCCAACATGCCTGTTATACCATACTAAATTCTAGCCAAT
GTGAGGGACAAGACATATTTCGCAATCACAGCTTCCCTTTAGGTTCTCAG
AAGTACTCCTATGAAGGATGTACCACTTTGCCATATCACAGGGAAGACCA
GTGCCTAGACAGTAAAACTGATCTGCTCCAGATCTTCAAGCTAGCGAGAG
ACTTCTAGACCGTGCGACCCCAAGGTTCAAGATAGAAGCAAGTGTATCTG
CCAGCTACCACTGTTAACTTCGTCTACAGAAAAAGTTCCGATCCTGCTCA
TAAGAGTCCTTTACCCCGGCATTGGAGAGACTTGGCTCAGTGCCTTAGAA
GGCCTACTGTTCTTCCTGACAATCTGAACTCCATTTCAAGTATTCTTGTC
AGGCGCCTTGTACGTGCC
TCATTGTAGCGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACTGTTTTCTCCTTGATAAAAA
GCTGACAAACTGAAAGAAAAGAAACAAAAGGTTGGACAGCCAAGCAGCCT
GCTTGGTGGAGAAGCGGGAGATGTGCTTTTGGGCAAAGAATCAAAACTCA
TCTCCCTTTCTCACTCACTCAAATAAAGTCATGGACTTTGCAGTTAAATC
TCAACTCTTTTGGATGATGGTAAAATGCCAGGCCAGCGAAGGATGGCTTT
AGGGGAGGCCTACCTCGGAGGTAGCGGGCGCACTGAGTTTGGATCGGGGT
CACATCATGCAGGCTGTCTAGGCGCACGGAATTCGGGCTACAGAACCGAT
GGAGTGTACTGCACACCCCGATAATCGAGCTGAATACATTATCCATGTCC
CCTCACCCCCATCGCATGGCTGATGATACGATGTACTCTGTTGTGTGGTC
CACTGCGCTAGGCACATCCGGCTCGAGCGGGCTGTGCCGCTCCACAGATC
TATTGTCGTGCTGCTACATTTCAATTTGTCCATCTGCGCTCTGCATGCTC
TGTTAAGCCGTCTCCACCCGCTTCTACTCATACGTGTCAGCATCTGATAT
CCCCACATGATGCTGCTCTCGCAATGTCGTACCTCCCTATCGCCTACTTC
CTGTTCCTATACCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_h16.b1 MSMg01no057_h16.b1 CHROMAT_FILE:
MSMg01no057_h16.b1 PHD_FILE: MSMg01no057_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:26 2005
         (209 letters)



>mm_chr13_55222961_55223569
          Length = 609

 Score =  391 bits (202), Expect = e-113
 Identities = 205/206 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   taagaaggataaaaatatttcatctccatcctcaaatacctattatacagctgaagtagg 63
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 339 taagaaggataaaaatatttcatctccatcctcaaatacctattatagagctgaagtagg 280

                                                                       
Query: 64  cattggcgctctgagcctgtacaaacaaaagcaggcaagcagattaggaatgccttctat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cattggcgctctgagcctgtacaaacaaaagcaggcaagcagattaggaatgccttctat 220

                                                                       
Query: 124 tatttatttagttgtagtttttctgagggtctcactatgtagctccctggctggtctaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tatttatttagttgtagtttttctgagggtctcactatgtagctccctggctggtctaaa 160

                                     
Query: 184 attcaagatataaaccaggctgggat 209
           ||||||||||||||||||||||||||
Sbjct: 159 attcaagatataaaccaggctgggat 134


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)