Query= MSMg01no058_i17.b1 MSMg01no058_i17.b1 CHROMAT_FILE:
MSMg01no058_i17.b1 PHD_FILE: MSMg01no058_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:49 2005
(469 letters)
>mm_chr13_18060822_18061690
Length = 869
Score = 855 bits (442), Expect = 0.0
Identities = 454/458 (99%), Gaps = 1/458 (0%)
Strand = Plus / Plus
Query: 3 gaattcaatatcctttcattcagaaacttactgtgcaaacttccaaaaggactgtataaa 62
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcaatatcctttgattcagaaacttactgtgcaaacttccaaaaggactgtataaa 262
Query: 63 atcttcattaataagaagagaataattgaatgggatacctggacatgttcccagaaatgt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atcttcattaataagaagagaataattgaatgggatacctggacatgttcccagaaatgt 322
Query: 123 ctgcagccttgaaaaaaatagcttatatttctactcactccgccacaggaatagaactga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctgcagccttgaaaaaaatagcttatatttctactcactccgccacaggaatagaactga 382
Query: 183 agggtaattcaggacaagtaaaaactatgatatcatgtcatctgcaaatagggatacttt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agggtaattcaggacaagtaaaaactatgatatcatgtcatctgcaaatagggatacttt 442
Query: 243 ggctcatccttttcctattcacgttattttaaggttcttggggctctggctactgctttg 302
|||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 443 ggctcatccttttcctattcacgttattttgag-tccttggggctctggctactgctttg 501
Query: 303 agcacagtattggaaaggagtgggaatagtgaatatctcgtttcactcctgagttcaggg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agcacagtattggaaaggagtgggaatagtgaatatctcgtttcactcctgagttcaggg 561
Query: 363 gaatgcttcaagttttcctccatttagtatgctgttatctgtgggcttctcacgtatagc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gaatgcttcaagttttcctccatttagtatgctgttatctgtgggcttctcacgtatagc 621
Query: 423 atttattaagatgaactatgtagtcctacttactctgt 460
||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atttattaagatgaactatgtagtcctacttactctgt 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no058_i17.g1 MSMg01no058_i17.g1 CHROMAT_FILE:
MSMg01no058_i17.g1 PHD_FILE: MSMg01no058_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:49 2005
(245 letters)
>mm_chr13_18217145_18217789
Length = 645
Score = 458 bits (237), Expect = e-133
Identities = 243/245 (99%)
Strand = Plus / Minus
Query: 1 accctgccaggcaatcaggcaggcaggcaggaggcccaccctggcagcgcactcagtgta 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 accctgccaggcaatcaggcaggcaggcaggaggcccaccctggcagcggactcagtgta 386
Query: 61 agactgttctttctcaattctccccccagacacaccatcctgagaagccactttttccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agactgttctttctcaattctccccccagacacaccatcctgagaagccactttttccta 326
Query: 121 ccacaggaagtccaagagaacactatagctagcagtctgacagccaaactgaaccctggc 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccacaggaagcccaagagaacactatagctagcagtctgacagccaaactgaaccctggc 266
Query: 181 cttttgtatcctgccaggtttgaaaagctggacatcacccctaaaagtgcccagaagatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttttgtatcctgccaggtttgaaaagctggacatcacccctaaaagtgcccagaagatc 206
Query: 241 aagcc 245
|||||
Sbjct: 205 aagcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
