BAC Information

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BAC

Clone NameMSMg01-058L06
Chromosome13 (Build37)
Map Location 24,130,400 - 24,130,789
singlet/doubletsinglet
Overlap geneLrrc16
Upstream geneV1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
Downstream geneLOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058L06.T7 (MSMg01no058_l06.b1)MSMg01-058L06.TJ (MSMg01no058_l06.g1)
ACCAG285555AG285556
length728712
length of high quality
(start - end)
440 (37 - 476)393 (60 - 452)
definitionCHROMAT_FILE: MSMg01no058_l06.b1 PHD_FILE: MSMg01no058_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:01 2005CHROMAT_FILE: MSMg01no058_l06.g1 PHD_FILE: MSMg01no058_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAGAGCGCGGAATTCCTTCCT
CCTACCTCTCCTGCTTCCCCCTCCTATCCCCTTCCTTATCTCCCATTCTT
TGTTTCCTCATGGCCTTTCTGTGTATATCCCAAGATGATCTTAAACTTAT
AGTGGCTCTTCACTTTCAGCCTTAAGGGTGCTGAGATTACAGGTGTGTGC
ACTACCACGCTTGAGTCCTTTAAAATCTATTAATTTTATATTTTATTTAT
GGCTGTGTTTGTGTGCACCCATGTATGAGCACATGTGTACATGCATGCCG
TTGTGTACATGAGGAAGTCAGAGGACAATATTTAGGTGTTGATTTCCTCC
TTCCAATGTGTGGGTCCCGGGGAACAAACTCAAGCAATCTCATTGGCCGG
CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC
TTCCCTTCCCCTTCCCCTTCCCCTTCCTCTTCCTTCTCCCCCCTCCCGCT
TCCCCTTTTTTTCCCCATCTGTGTCCTATCCTTCATTCCCCGCCTTCCTA
TCCTTCAATAATTAGTTGGTGGAGGGAAAACCCTCACTGTTCCCCTTCTT
TTGCTCGCCCGGAACGCGTTTCGAGTTAGTTTGTAATAGCCCCCCATGCA
TATCTCAAGATGAAAAAAAAACCCCTTTTTTTAACGCAAACCGGCCGTTA
AAAATCCGATCAACCGTTTGCTTTTTAT
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXACTTACAGAGGATGAAGGAAATGCCTCCTCCCCTGCCCCCA
TGCCAGAGCGCTGGGACCTGCGGGGCACAGGTGTGAGATGTGTCCACAAA
GCCCAGATGAGAGTGGACTGAGAGATGTGTGCTCTCACAGGAGATTTAAG
GAAGGGAATAAAGGAGAGCACTGTGGGGGAAACTAAGTAAACAGAAAAGG
ATGAATTTCAGAGGAGACAGCATCTATACCAGAGGACATGTGACCACGGC
ATACCACGCACAACAAGGGTAGTAAATACAGGGCTAGAATGAAGCACACT
GAAGCAACCACTGAATAATTAGCTAATAAAAATTATCATATAATTAAATG
AAGAAAGTCAGGGAGGGGAGAGAAGGGGAGGGAGAAAGGGAAGGAGAGGA
AGGAAATTTTTTTCCCCATACAATGCGCTATTGCGGGGCCCCCCGTTATC
CCGCCACAATAATTAATCCTTGCTCTTGTGGAATCTCCCGCCTTACCCCT
CTTTTTTCGCTTCTTTTCCGCGCCGTTAGTTGCCGCCGCCTTTCGAATAT
AAATCTCATAATCTCCCGCCCGCGAAAATCGTCCATTTCCCGCCTCCCCC
CTATATCCCGTTTTGTTTACCCTCTTCCTTTCTCCCCACTCCTATGTTTT
CCGGTTGCGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_l06.g1 MSMg01no058_l06.g1 CHROMAT_FILE:
MSMg01no058_l06.g1 PHD_FILE: MSMg01no058_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:01 2005
         (393 letters)



>mm_chr13_24130200_24130992
          Length = 793

 Score =  746 bits (386), Expect = 0.0
 Identities = 389/390 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttacagaggatgaaggaaatgcctcctcccctgcccccatgccagagcgctgggacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttacagaggatgaaggaaatgcctcctcccctgcccccatgccagagcgctgggacct 260

                                                                       
Query: 61  gcggggcacaggtgtgagatgtgtccacaaagcccagatgagagtggactgagagatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcggggcacaggtgtgagatgtgtccacaaagcccagatgagagtggactgagagatgtg 320

                                                                       
Query: 121 tgctctcacaggagatttaaggaagggaataaaggagagcactgtgggggaaactaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctctcacaggagatttaaggaagggaataaaggagagcactgtgggggaaactaagta 380

                                                                       
Query: 181 aacagaaaaggatgaatttcagaggagacagcatctataccagaggacatgtgaccacgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacagaaaaggatgaatttcagaggagacagcatctataccagaggacatgtgaccacgg 440

                                                                       
Query: 241 cataccacgcacaacaagggtagtaaatacagggctagaatgaagcacactgaagcaacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cataccacgcacaacaagggtagtaaatacagggctagaatgaagcacactgaagcaacc 500

                                                                       
Query: 301 actgaataattagctaataaaaattatcatataattaaatgaagaaagtcagggagggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 actgaataattagctaataaaaattatcatataattaaatgaagaaagttagggagggga 560

                                         
Query: 361 gagaaggggagggagaaagggaaggagagg 390
           ||||||||||||||||||||||||||||||
Sbjct: 561 gagaaggggagggagaaagggaaggagagg 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)